These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 659 fasta sequence [CCGAAATCGGGCACAGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTACTCACTGCGTGCATATACTGGTAAAAACATCCCACATGGTTTGCCAGCGGACAAGGATACCGGTGCTGGGATTTGCCGAAACAGCTGAGCGTGTCTTCCAGTATGGACCAGCAAAACTTCGACCTCTGGCCGGCTTTTCAAAAGCCTTCGTTGACTATGCCCTGATGGCGACGTACTTCAGTGCCGGGTGCGTGTACATCGTGTTCATCGCGA] [+] EMBL BM576755 [CCGAAATCGGGCACAGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTACTCACTGCGTGCATATACTGGTAAAAACATCCCACATGGTTTGCCAGCGGACAAGGATACCGGTGCTGGGATTTGCCGAAACAGCTGAGCGTGTCTTCCAGTATGGACCAGCAAAACTTCGACCTCTGGCCGGCTTTTCAAAAGCCTTCGTTGACTATGCCCTGATGGCGACGTACTTCAGTGCCGGGTGCGTGTACATCGTGTTCATCGCGA] [+] EMBL BM583523 [ ccgCGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAACCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAGAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTACTCACTGCGTGC ATACTGGTAAAAACATCCCACATGGTTTGCCAGCGGACAAGGA ] [+] EMBL BM638247 [ ccgACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTACTCACTGCGTGCATATACTGGTAAAAACATCCCACATGGTTTGCCAGCGGACAAGGATACCGGTGCTGGGATTTGCCGAAACAGCTGAGCGTGTCTTCCAGTATGGACCAGCAAAACTTCGACCTCTGGCCGGCTTTTCAAAAGCCTTCGTTGACTATGCCCTGATGGCGACGTACTTCAGTGCCGGGTGCGTGTACATCGTGTTCATCG ] consensusID : consensus_5472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CCGGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGGTTAGTAAGCTGCAGGAGTTGGCAGTTACTAGGCAACAAACATTCTAGTGATCTGTGATCGTGATCGTGTGCGTTTGGCATATTTGCAGTTTGAAGTAGTTTAGTGTTTCTTTTCTAGTACAGTACAAAATTAACGTATTATTGTGTGTGTGTATATTTTTGTTGACAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTAC] [+] EMBL BM648703 [CCGGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGGTTAGTAAGCTGCAGGAGTTGGCAGTTACTAGGCAACAAACATTCTAGTGATCTGTGATCGTGATCGTGTGCGTTTGGCATATTTGCAGTTTGAAGTAGTTTAGTGTTTCTTTTCTAGTACAGTACAAAATTAACGTATTATTGTGTGTGTGTATATTTTTGTTGACAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5472#0 ------------------------------------------------------------ consensus_5472#1 CCGGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCA 60 consensus_5472#0 ------------------------------------------------------------ consensus_5472#1 CAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAG 120 consensus_5472#0 -----------------------------CCGAAATCGGGCACAGTCGCGAACGATCGCT 31 consensus_5472#1 GTTAGTAAGCTGCAGGAGTTGGCAGTTACTAGGCAACAAACATTCTAGTGATCTGTGATC 180 * * * ** * * ** * * consensus_5472#0 TCACCGGTGCAC-TACGGCACACTAG-AGCTCGA-----TACACTGCACAACGTGTACTG 84 consensus_5472#1 GTGATCGTGTGCGTTTGGCATATTTGCAGTTTGAAGTAGTTTAGTGTTTCTTTTCTAGTA 240 *** * * **** * * * ** * ** * * ** * ** * consensus_5472#0 CGGGCAAGAGATCGTGGGTT-TTGCGGTTTTGGTAGCTTCGGTGCTTAGTACGAAATATT 143 consensus_5472#1 CAGTACAAAATTAACGTATTATTGTGTGTGTGTATATTTTTGTTGACAGTACGAAATATT 300 * * * * * * ** *** * * ** ** ** ************* consensus_5472#0 GAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCAC 203 consensus_5472#1 GAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCAC 360 ************************************************************ consensus_5472#0 CGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCT 263 consensus_5472#1 CGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCT 420 ************************************************************ consensus_5472#0 CCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCG 323 consensus_5472#1 CCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCG 480 ************************************************************ consensus_5472#0 GTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGG 383 consensus_5472#1 GTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGG 540 ************************************************************ consensus_5472#0 CGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCT 443 consensus_5472#1 CGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCT 600 ************************************************************ consensus_5472#0 GTACTCACTGCGTGCATATACTGGTAAAAACATCCCACATGGTTTGCCAGCGGACAAGGA 503 consensus_5472#1 GTAC-------------------------------------------------------- 604 **** consensus_5472#0 TACCGGTGCTGGGATTTGCCGAAACAGCTGAGCGTGTCTTCCAGTATGGACCAGCAAAAC 563 consensus_5472#1 ------------------------------------------------------------ consensus_5472#0 TTCGACCTCTGGCCGGCTTTTCAAAAGCCTTCGTTGACTATGCCCTGATGGCGACGTACT 623 consensus_5472#1 ------------------------------------------------------------ consensus_5472#0 TCAGTGCCGGGTGCGTGTACATCGTGTTCATCGCGA 659 consensus_5472#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||