These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence [CCGCCCACGCGTCCGCAGTTTTACAAGCCACAGCATCCGTGTCGTGAAAAACACGATGTGGGGTGAACAGAGTGAAAAGTCCGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTCATCGAGCTGGAAAAGATAAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAAGCGGCCCAGTTCGACGAGTGGCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGATCTGGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAGGGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAGCTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCACCAGAGCGTAGCGAAGGATGTTACGCAGATTTTCCGCGGCAAACGGCCCAACAGCTGGAAGACCTCCAGAA] [+] EMBL BM602060 [CCGCCCACGCGTCCGCAGTTTTACAAGCCACAGCATCCGTGTCGTGAAAAACACGATGTGGGGTGAACAGAGTGAAAAGTCCGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTCATCGAGCTGGAAAAGATAAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAAGCGGCCCAGTTCGACGAGTGGCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGATCTGGAGGACCTGCTGG ] [+] EMBL BM618556 [ AGCCACAGCACCAGTGTCGTGAAAAACACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTAATCGAGCTGGAAAAGATTAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAGGCGGCCCAGTTCGACGAGTGGCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGATCTAGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAGGGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAGCTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCACCAGAGCGTAGCGAAGGATGTTACGCAGATTTTCCGCGGCAAACGGCCCAACAGCTGGAAGACCTCCAGAA] consensusID : consensus_5478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [CCGGCCACAGCACCAGTGTCGTGAAAAAGTACGTGAAAATTAGTGAAAAACCGAAAAGTTTCCATCGATTTCCACTAACACCGCCTTCCTTACCTCTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTAATCGAGCTGGAAAAGATTAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAGGCGGCCCAGTTCGACGAGTGGCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGATCTAGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAGGGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAGCTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCACCA] [+] EMBL BM577144 [CCGGCCACAGCACCAGTGTCGTGAAAAAGTACGTGAAAATTAGTGAAAAACCGAAAAGTTTCCATCGATTTCCACTAACACCGCCTTCCTTACCTCTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTAATCGAGCTGGAAAAGATTAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAGGCGGCCCAGTTCGACGAGTGGCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGATCTAGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAGGGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAGCTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCACCA] consensusID : consensus_5478#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [ATCGGCACGAGGANGTNATACAAGCCACAGCACCAGTGTCGTGAAAAACGTACGTGAAAATTAGTGAAAAAGCCGTAAAAGTTTCCATCGATTTCCTACTAACATCCGCCTTCCTTACCTCTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTTCGTGTGGAAGAAGAACGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGACGGCACTGAATAGGAAAACGGCAGGCTCGAGAATGTAATCGGAGCTGGAAAAGATTCAGAGAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGGCGCTCGAAGCGAGGACGGACCAGGTTCGACGAGTGGCTAGCGAGCAGGAGGGANNACGTTGCCATCTGGAGCAGGCGGAANGCTGCGCAGNGCAAGATCCGGGATACAGGTACGGGNGCGGGGCCAAACCGAGTCGACCTGCGTCGCCCCGAGTTACATACTCGGGAGCCAAAANACCTGGNCAGGAAACTCCGATCCGAGATGCAGATGCGACGAAACCCGTACACGGTACC] [+] EMBL BX468707 [ATCGGCACGAGGANGTNATACAAGCCACAGCACCAGTGTCGTGAAAAACGTACGTGAAAATTAGTGAAAAAGCCGTAAAAGTTTCCATCGATTTCCTACTAACATCCGCCTTCCTTACCTCTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTTCGTGTGGAAGAAGAACGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGACGGCACTGAATAGGAAAACGGCAGGCTCGAGAATGTAATCGGAGCTGGAAAAGATTCAGAGAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGGCGCTCGAAGCGAGGACGGACCAGGTTCGACGAGTGGCTAGCGAGCAGGAGGGANNACGTTGCCATCTGGAGCAGGCGGAANGCTGCGCAGNGCAAGATCCGGGATACAGGTACGGGNGCGGGGCCAAACCGAGTCGACCTGCGTCGCCCCGAGTTACATACTCGGGAGCCAAAANACCTGGNCAGGAAACTCCGATCCGAGATGCAGATGCGACGAAACCCGTACACGGTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5478#1 --------------------CCGGCCACAGCACCAGTGTCGTGAAAAA-GTACGTGAAAA 39 consensus_5478#2 ATCGGCACGAGGANGTNATACAAGCCACAGCACCAGTGTCGTGAAAAACGTACGTGAAAA 60 consensus_5478#0 ------------------------------------------------------------ consensus_5478#1 TTAGTGAAAAA-CCG-AAAAGTTTCCATCGATTTCC-ACTAACA-CCGCCTTCCTTACCT 95 consensus_5478#2 TTAGTGAAAAAGCCGTAAAAGTTTCCATCGATTTCCTACTAACATCCGCCTTCCTTACCT 120 consensus_5478#0 ------------CCGCCCACGCGTCCGCAGTTTTACAAGCCACA---GCATCCGTGTCGT 45 *** * * *** * *** * * *** ** * * * * * consensus_5478#1 CTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTT-CGTGTGGAAG 154 consensus_5478#2 CTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTTCGTGTGGAAG 180 consensus_5478#0 GAA----AAACACGATGTGGGGTGAACAGAGTGAAAAGTCCGCCCCGTT-CGTGTGGAAG 100 * ****************************** ******** ********** consensus_5478#1 AAGAA-GCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGA-GGCACTGA 212 consensus_5478#2 AAGAACGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGACGGCACTGA 240 consensus_5478#0 AAGAA-GCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGA-GGCACTGA 158 ***** ********************************************* ******** consensus_5478#1 ATAGGAAAACGC--AGCTCGAGAATGTAATCG-AGCTGGAAAAGATT--AAAAAGCGCCG 267 consensus_5478#2 ATAGGAAAACGGCAGGCTCGAGAATGTAATCGGAGCTGGAAAAGATTCAGAGAAGCGCCG 300 consensus_5478#0 ATAGGAAAACGC--AGCTCGAGAATGTCATCG-AGCTGGAAAAGATA--AAAAAGCGCCG 213 *********** ************ **** ************* * ******** consensus_5478#1 GCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAG-CGCT 326 consensus_5478#2 GCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGGCGCT 360 consensus_5478#0 GCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAG-CGCT 272 ******************************************************* **** consensus_5478#1 CGAAG--GAGGCGGCCCAG-TTCGACGAGTGGC-AGCG-GCAGGAGG--AAACGTT-CCA 378 consensus_5478#2 CGAAGCGAGGACGGACCAGGTTCGACGAGTGGCTAGCGAGCAGGAGGGANNACGTTGCCA 420 consensus_5478#0 CGAAG--GAAGCGGCCCAG-TTCGACGAGTGGC-AGCG-GCAGGAGG--AAACGTT-CCA 324 ***** *** **** ************* **** ******** ***** *** consensus_5478#1 TCTGGAGCAGGCG--AAGCTGCGCAGC--AAGATCCGC-ATACAGG-ACGGGCG---GGC 429 consensus_5478#2 TCTGGAGCAGGCGGAANGCTGCGCAGNGCAAGATCCGGGATACAGGTACGGGNGCGGGGC 480 consensus_5478#0 TCTGGAGCAGGCG--AAGCTGCGCAGC--AAGATCCGC-ATACAGG-ACGGGCG---GGC 375 ************* * ********* ******** ******* ***** * *** consensus_5478#1 CAAACCGA-TCGACCTGC-TCGCCCAG---TACAT-CTCGG-AGC---AAAACCTGG--A 477 consensus_5478#2 CAAACCGAGTCGACCTGCGTCGCCCCGAGTTACATACTCGGGAGCCAAAANACCTGGNCA 540 consensus_5478#0 CAAACCGA-TCGACCTGC-TCGCCCAG---TACAT-CTCGG-AGC---AAAACCTGG--A 423 ******** ********* ****** * ***** ***** *** ** ****** * consensus_5478#1 GGAA---TCGATC-GAGATGCAGATGC-ACGAA--CCGTACACG-TACCTGAACGGGCTG 529 consensus_5478#2 GGAAACTCCGATCCGAGATGCAGATGCGACGAAACCCGTACACGGTACC----------- 589 consensus_5478#0 GGAA---TCGATC-GAGATGCAGATGC-ACGAA--CCGTACACG-TACCTGAACGGGCTG 475 **** ***** ************* ***** ********* **** consensus_5478#1 GGGCTGGACGATCTAGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAG 589 consensus_5478#2 ------------------------------------------------------------ consensus_5478#0 GGGCTGGACGATCTGGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAG 535 consensus_5478#1 GGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAG 649 consensus_5478#2 ------------------------------------------------------------ consensus_5478#0 GGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAG 595 consensus_5478#1 CTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCAC 709 consensus_5478#2 ------------------------------------------------------------ consensus_5478#0 CTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCAC 655 consensus_5478#1 CA---------------------------------------------------------- 711 consensus_5478#2 ------------------------------------------------------------ consensus_5478#0 CAGAGCGTAGCGAAGGATGTTACGCAGATTTTCCGCGGCAAACGGCCCAACAGCTGGAAG 715 consensus_5478#1 ---------- consensus_5478#2 ---------- consensus_5478#0 ACCTCCAGAA 725 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||