These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 968 fasta sequence [CCGCGGACGCGTGGGAACGGTGCCAGCTGCGTTAAAAAAAAAGCAATAGGGCAACGCTTTTGGGTAGCGGCTGTGTGCTGCTTAGGAACGTCGTAGGCTACTCTGTCGATGAGTACACACCGTGGCTGTGGATTGCTGTCAGTGAGGTTTAGTGCATCATGAAGAGCTTGACTGCTGCAGCTACGTTGCTTAGCAGCGCTTTGGTGCTGCTGGTGCTGTGTCAAGAAACGGACGCTCTTTCCGTACGGCCACGCCGTGACCTGGTGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCTCCAAGCTGAAGGACGCGCTCGACCATGGTGCGAACGTGAAATCGGAAGGGAAGCGCTCTATCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGCTTCGGTGACGCGGCCAACGAGGACGCGTCCGCGAACGATGATGATCTGGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCGTACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCCGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGGCGCAAGCGTTCCCCGGATATGGTGCAGTTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTCGACAGTGAGCTCAGTCCGGACAAGAAGCTGACAACCCACGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGGGAGGATGTGGCACGCAACAAGCGCTCGCCTCAAACGGATGGGCAGGAAGAGGGACAAGAT-GGGGGACCACCGAAGGGCCCACCACCACGGGGCGGACCCAAGGGTCCAAGGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGANGAAGAAACAACCGCGACCACGGCT] [+] EMBL BM618955 [CCGCGGACGCGTGGGAACGGTGCCAGCTGCGTTAAAAAAAAAGCAATAGGGCAACGCTTTTGGGTAGCGGCTGTGTGCTGCTTAGGAACGTCGTAGGCTACTCTGTCGATGAGTACACACCGTGGCTGTGGATTGCTGTCAGTGAGGTTTAGTGCATCATGAAGAGCTTGACTGCTGCAGCTACGTTGCTTAGCAGCGCTTTGGTGCTGCTGGTGCTGTGTCAAGAAACGGACGCTCTTTCCGTACGGCCACGCCGTGACCTTATGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCTCCAAGCTGAAAGACGCGCTCGACCATGGTGTGAACGTGAAATCGGAAGGAAAGCGCTCTATCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGCTTCGGTGACGCGGCCAATGAGGACGCGTCCGCGAACGAGGACGATCTGGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCATACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCCGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGGCGCAAGCGTTCCCCGGATATGGTGCAGTTGGCTGCT ] [+] EMBL BX621311 [ TGCTGTAGCTACGTTGCTTAGCAGCGCTTTGGTGCTGCTGGTGCTGTGTCAAGAAACGGACGCTCTTTCCGTACGGCCACGCCGTGACCTGGTGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCTCCAAGCTGAAGGACGCGCTCGACCATGGTGCGAACGTGAAATCGGAAGGGAAGCGCTCTATCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGCTTCGGTGACGCGGCCAACGAGGACGCGTCCGCGAACGATGATGATCTGGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCGTACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCCGAAACGGCAACGACTGTGGCGGCACCTGTGGCCGAGCGACGGCGCAAGCGTTCCCCGGATATGGTGCAGCTGACTGCTTTCGAAAAGAAATCGCTCTCGGTCGACAGTGAGCTCAGTCCGGACAAGAAGCTGACAACCCACGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGGGAGGATGTGGCACGCAACAAGCGCTCGCCTCAAACGGATGGGCAGGAAGAGGGACAAGAT GGGGGACCACCGAAGGGCCCACCACCACGGGGCGGACCCAAGGGTCCAAGGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGANGAAGAAACAACCGCGACCACGGCT] [+] EMBL BM577149 [ ccgagGAAACGGACGCTCTTTCCGTACGGCCACGCCGTGACCTGGTGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCTCCAAGCTGAAGGACGCGCTCGACCATGGTGCGAACGTGAAATCGGAAGGGAAGCGCTCTATCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGTTTCGGTGACGCGGCCAACGAGGACGCGTCCGCGAACGATGATGATCTGGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCGTACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCCGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGTCGCAAGCGTTCCCCGGATATGGTGCAGTTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTCGACAGTGAGCTCAGTCCGGACAAGAAGCTGACAACCCACGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGGGAGGATGTAGCACGCAACAAGCGCTCACCTCAAACGGATGGGCAGGAAGAGGGACAAGATGGGGGGACCACCGAAGGGCCCACCACCACGGGGCGGACCCAAGGGTCCAAGG ] consensusID : consensus_5479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCGTGAACACCGGCTTCGGTGACGCGGCCAACGAGGACGCGTCCGCGAACGAGGATGATCTGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCGTACGTTAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCAGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGTCGCAAGCGTTCCCCGGATATGGTGCAGCTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTAGATAGTGTGATCGGTCCGGACAAGAAGCAAACAACCCATGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGGGAGGATGTGGCACGCAATAAGCGCTCACCTCAATCGGATGGGCAAGAAGAGGGGCAAGATGGCGGACCACCGAAGGGGCCACCACCACGGGGCGGACCCAAGGGTCCAAGGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGATGAAGAAACAACCGCGACCACGGCTACGGTGGAGCGTCGGAAGCGGGAAGTTGTTGAGTTGGTGGAAACGGAACGTAACAAGCGATCT] [+] EMBL BM626793 [CCGCCCACGCGTCCGCCCACGCGTCCGCGTGAACACCGGCTTCGGTGACGCGGCCAACGAGGACGCGTCCGCGAACGAGGATGATCTGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCGTACGTTAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCAGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGTCGCAAGCGTTCCCCGGATATGGTGCAGCTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTAGATAGTGTGATCGGTCCGGACAAGAAGCAAACAACCCATGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGGGAGGATGTGGCACGCAATAAGCGCTCACCTCAATCGGATGGGCAAGAAGAGGGGCAAGATGGCGGACCACCGAAGGGGCCACCACCACGGGGCGGACCCAAGGGTCCAAGGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGATGAAGAAACAACCGCGACCACGGCTACGGTGGAGCGTCGGAAGCGGGAAGTTGTTGAGTTGGTGGAAACGGAACGTAACAAGCGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5479#0 CCGCGGACGCGTGGGAACGGTGCCAGCTGCGTTAAAAAAAAAGCAATAGGGCAACGCTTT 60 consensus_5479#1 ------------------------------------------------------------ consensus_5479#0 TGGGTAGCGGCTGTGTGCTGCTTAGGAACGTCGTAGGCTACTCTGTCGATGAGTACACAC 120 consensus_5479#1 ------------------------------------------------------------ consensus_5479#0 CGTGGCTGTGGATTGCTGTCAGTGAGGTTTAGTGCATCATGAAGAGCTTGACTGCTGCAG 180 consensus_5479#1 ------------------------------------------------------------ consensus_5479#0 CTACGTTGCTTAGCAGCGCTTTGGTGCTGCTGGTGCTGTGTCAAGAAACGGACGCTCTTT 240 consensus_5479#1 ------------------------------------------------------------ consensus_5479#0 CCGTACGGCCACGCCGTGACCTGGTGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCT 300 consensus_5479#1 ------------------------------------------------------------ consensus_5479#0 CCAAGCTGAAGGACGCGCTCGACCATGGTGCGAACGTGAAATCGGAAGGGAAGCGCTCTA 360 consensus_5479#1 ------------------------------------------------------------ consensus_5479#0 TCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGCTTCGGTGACG 420 consensus_5479#1 ---------CCGCCCACGCGTCCGCCCACGCGTCC-GCGTGAACACCGGCTTCGGTGACG 50 * * * ** ** * * **** ******** *************** consensus_5479#0 CGGCCAACGAGGACGCGTCCGCGAACGATGATGATCTGGTGCGACGTCGCCGGGCACTGG 480 consensus_5479#1 CGGCCAACGAGGACGCGTCCGCGAACGAGGATGATCTG-TGCGACGTCGCCGGGCACTGG 109 **************************** ********* ********************* consensus_5479#0 ATGTGCTGGGGGCAACGTACGCGTACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGA 540 consensus_5479#1 ATGTGCTGGGGGCAACGTACGCGTACGTTAGCCTGCTACCCCAGTCACCGCACGGCACGA 169 **************************** ******************************* consensus_5479#0 ACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGG 600 consensus_5479#1 ACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGG 229 ************************************************************ consensus_5479#0 CAGCCGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGGCGCAAGCGTTCCC 660 consensus_5479#1 CAGCAGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGTCGCAAGCGTTCCC 289 **** ***************************************** ************* consensus_5479#0 CGGATATGGTGCAGTTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTCGACAGTGAGCTCA 720 consensus_5479#1 CGGATATGGTGCAGCTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTAGATAGTGTGATCG 349 ************** ******************************* ** **** * ** consensus_5479#0 GTCCGGACAAGAAGCTGACAACCCACGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTA 780 consensus_5479#1 GTCCGGACAAGAAGCAAACAACCCATGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTA 409 *************** ******** ********************************** consensus_5479#0 CACTGTTGAGGGAGGATGTGGCACGCAACAAGCGCTCGCCTCAAACGGATGGGCAGGAAG 840 consensus_5479#1 CACTGTTGAGGGAGGATGTGGCACGCAATAAGCGCTCACCTCAATCGGATGGGCAAGAAG 469 **************************** ******** ****** ********** **** consensus_5479#0 AGGGACAAGATGGGGGACCACCGAAGGGCCCACCACCACGGGGCGGACCCAAGGGTCCAA 900 consensus_5479#1 AGGGGCAAGATGGCGGACCACCGAAGGGGCCACCACCACGGGGCGGACCCAAGGGTCCAA 529 **** ******** ************** ******************************* consensus_5479#0 GGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGANGAAGAAACAACCGCGA 960 consensus_5479#1 GGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGATGAAGAAACAACCGCGA 589 ******************************************* **************** consensus_5479#0 CCACGGCT---------------------------------------------------- 968 consensus_5479#1 CCACGGCTACGGTGGAGCGTCGGAAGCGGGAAGTTGTTGAGTTGGTGGAAACGGAACGTA 649 ******** consensus_5479#0 ----------- consensus_5479#1 ACAAGCGATCT 660 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||