These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [CGACCCACGCGTCCGCTTTCTTTCTCTCGCCGCATTCGCTGACTCTCTTTCACACGATCCTACACGCTACACGATGGAAGTGTAGGGAAGTAGGGATAAAGCACCGGAAATTATGATAAAACCAACGAATAGAACAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCCCATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAAACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGGGAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACGCTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTGTTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATCCCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCAAAACAATGATCGTGGGTGTAAATTGTAAATGTTC] [+] EMBL BM621793 [CGACCCACGCGTCCGCTTTCTTTCTCTCGCCGCATTCGCTGACTCTCTTTCACACGATCCTACACGCTACACGATGGAAGTGTAGGGAAGTAGGGATAAAGCACCGGAAATTATGATAAAACCAACGAATAGAACAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCCCATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAAACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGGGAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACGCTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTGTTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATCCCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCAAAACAATGATCGTGGGTGTAAATTGTAAATGTTC] consensusID : consensus_548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCCCATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAAACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGGGAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACGCTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTGTTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATCCCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCAAAACAATGA] [+] EMBL BM645305 [CCGCGGACGCGTGGGCGGACGCGTGGGAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCCCATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAAACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGGGAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACGCTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTGTTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATCCCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCAAAACAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_548#0 CGACCCACGCGTCCGCTTTCTTTCTCTCGCCGCATTCGCTGACTCTCTTTCACACGATCC 60 consensus_548#1 ------------------------------------------------------------ consensus_548#0 TACACGCTACACGATGGAAGTGTAGGGAAGTAGGGATAAAGCACCGGAAATTATGATAAA 120 consensus_548#1 -------------------------------------------CCGCGGAC---GCGTGG 14 *** * * consensus_548#0 ACCAACGAATAGAACAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCC 180 consensus_548#1 GCGGACGCGTGGGA--GAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCC 72 * *** * * * ******************************************** consensus_548#0 CATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAA 240 consensus_548#1 CATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAA 132 ************************************************************ consensus_548#0 ACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGG 300 consensus_548#1 ACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGG 192 ************************************************************ consensus_548#0 GAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACG 360 consensus_548#1 GAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACG 252 ************************************************************ consensus_548#0 CTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTG 420 consensus_548#1 CTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTG 312 ************************************************************ consensus_548#0 TTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATC 480 consensus_548#1 TTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATC 372 ************************************************************ consensus_548#0 CCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCA 540 consensus_548#1 CCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCA 432 ************************************************************ consensus_548#0 AAACAATGATCGTGGGTGTAAATTGTAAATGTTC 574 consensus_548#1 AAACAATGA------------------------- 441 ********* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||