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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 905 fasta sequence
[TATCTATTTCTTAATTCGGGATATGACGCCTTTAACGCATTCGCTAGAGCGCAGTCTACATCTTTTTCCCGTGCATGGGGGGGTTTTAGTGTGTGATTCCAGATTTTTATTTGTTTTCTCTGTTTTGTCACACCGATTCTTTCCACTTAAAAGATTTTTGTTTTTAGCATATCCTTCCTTCCCTATGCATTGATTTAGAAATGTCACAATTAAATTAGATTTAATCGTCCAAACACACACACAAACACATGTATGCTATTGGAAACCTATTCACATAAATAATAATAAACCTATCCCAGAGCGCGATTTCATCTCTTGGCTGTTGCGTACATTCGTTAGTGTTTGTGTTTATCTCTCCTAAGGGTGGGGGGAGAGAGGGCCGGATTTTGCATAGATGTCGTACTTACAATTTAAGAAACAAAACAAACAAAAAATAACGTAACAGCGACTTTGGAGGATAACACATCCAAATTGAACTCTTACTCCTTCTCCTCACTCTTGCTAATCTGGTATGCGGGGCGTTTCACTTTCGTCTTTTTTTTTTCTTTT-TTGGATTACTGGTCCATCACCCTCTTTCCGGCTGAAAATTTACACACACGCACGCAATAGACTATTTACCACGTATTTTAAACCACCTGGAGCGTGCGTGGAGCAGGGAGAGAATTATCCATTTTCTTTGTATGATATTGGCAACTTTATCTGTTTTTATCTTATACATTTTCGCCATTTTAACTAGTCTAACGCGTTGCATTTTTTGTTGCGTGATTGTTGCAGGACAACCGTTCCTCGCGCCAAGGGGAGAAAAAGGGTCTGAGGTTTGGCCCTGTTCTTTGTCGAAAGAAACACGCCGCAACTCAAAAAAGNGAGGCAAAATAGGAAAAAATACACTCGTGGCNGATCTGCCT]
[+] EMBL BX626009 [TATCTATTTCTTAATTCGGGATATGACGCCTTTAACGCATTCGCTAGAGCGCAGTCTACATCTTTTTCCCGTGCATGGGGGGGTTTTAGTGTGTGATTCCAGATTTTTATTTGTTTTCTCTGTTTTGTCACACCGATTCTTTCCACTTAAAAGATTTTTGTTTTTAGCATATCCTTCCTTCCCTATGCATTGATTTAGAAATGTCACAATTAAATTAGATTTAATCGTCCAAACACACACACAAACACATGTATGCTATTGGAAACCTATTCACATAAATAATAATAAACCTATCCCAGAGCGCGATTTCATCTCTTGGCTGTTGCGTACATTCGTTAGTGTTTGTGTTTATCTCTCCTAAGGGTGGGGGGAGAGAGGGCCGGATTTTGCATAGATGTCGTACTTACAATTTAAGAAACAAAACAAACAAAAAATAACGTAACAGCGACTTTGGAGGATAACACATCCAAATTGAACTCTTACTCCTTCTCCTCACTCTTGCTAATCTGGTATGCGGGGCGTTTCACTTTCGTCTTTTTTTTTTCTTTT TTGGATTACTGGTCCATCACCCTCTTTCCGGCTGAAAATTTACACACACGCACGCAATAGACTATTTACCACGTATTTTAAACCACCTGGAGCGTGCGTGGAGCAGGGAGAGAATTATCCATTTTCTTTGTATG ]
[-] EMBL BX467256 [ TTCGTCTTTTTTTTTTCTTTTNTTGGATTACTGGTCCATCACCCTCTTTCCGGCTGAANATTTACACACACGCACGCAATAGACTATTTACCACGTATTTTAAACCACCTGGAGCGTGCGTGGAGCAGGGAGAGAATTATCCATTTTCTTTGTATGATATTGGCAACTTTATCTGTTTTTATCTTATACATTTTCGCCATTTTAACTAGTCTAACGCGTTGCATTTTTTGTTGCGTGATTGTTGCAGGACAACCGTTCCTCGCGCCAAGGGGAGAAAAAGGGTCTGAGGTTTGGCCCTGTTCTTTGTCGAAAGAAACACGCCGCAACTCAAAAAAGNGAGGCAAAATAGGAAAAAATACACTCGTGGCNGATCTGCCT]
consensusID : consensus_5483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[ACTCCTTCTCCTCACTCTTGCTAATCTGGTATGCGGGGCGTTTCACTTTCGTCTTTTTTTTTTCTTTTTTGGATTACTGGTCCATCACCCTCTTTCCGGCTGAAAATTTACACACACGCACGCAATAGACCATTTGCCACGTATTTTAAACCACCTGGAGGGTGCGTGGAGCAGGGAGAGAATTATCCTTTTTCTTTGTTTGATATTGGCAACTTTATCTGTTTTTATCTTATACATTTTCGCCATTTTAACTAGTCTAACCGTTGCATTTTTTGTTGCGTGATTGTTGCAGGACAACCGTTCCTCGCGCAAGGGGAGAAAAAGGGTCTGAGGTTTGACCCTGTTCTTTATCGAAAGAAACACGCCGCAACTCAAAAAAGCAGGCGAAATAGGAAAAAGGAAACAAATATTAGATAAAAAAAGCTACTTTCTCTCTCGCTCTAAACGAAATCTACGCAAAAAATGTACAACAAACACATAGAAACTAATCTTCTCATCGAACACATTGAACTAAAAAAAGGACTGTGTTTAGCAGTTAGCATACGTTGGTTGTTTTTTTTCTTCTTCTCGTTAAAGTTTATTCCCCCTTTTTTCTATTACCCGG]
[-] EMBL BM652372 [ACTCCTTCTCCTCACTCTTGCTAATCTGGTATGCGGGGCGTTTCACTTTCGTCTTTTTTTTTTCTTTTTTGGATTACTGGTCCATCACCCTCTTTCCGGCTGAAAATTTACACACACGCACGCAATAGACCATTTGCCACGTATTTTAAACCACCTGGAGGGTGCGTGGAGCAGGGAGAGAATTATCCTTTTTCTTTGTTTGATATTGGCAACTTTATCTGTTTTTATCTTATACATTTTCGCCATTTTAACTAGTCTAACCGTTGCATTTTTTGTTGCGTGATTGTTGCAGGACAACCGTTCCTCGCGCAAGGGGAGAAAAAGGGTCTGAGGTTTGACCCTGTTCTTTATCGAAAGAAACACGCCGCAACTCAAAAAAGCAGGCGAAATAGGAAAAAGGAAACAAATATTAGATAAAAAAAGCTACTTTCTCTCTCGCTCTAAACGAAATCTACGCAAAAAATGTACAACAAACACATAGAAACTAATCTTCTCATCGAACACATTGAACTAAAAAAAGGACTGTGTTTAGCAGTTAGCATACGTTGGTTGTTTTTTTTCTTCTTCTCGTTAAAGTTTATTCCCCCTTTTTTCTATTACCCGG]
consensusID : consensus_5483#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence
[TCTCCGGCTGAAAATTTACACACACGCACGCAATAGACTATTTACCCACGTATTTTAAACCACCCTGGAGCGTGCGTGGAGCAGGGAGAGAACTTATCCATTTTCTTTGTATGATATTGGCAACTTTATCTGTTTTTATACACTTATACAGTTTCGCCATTTAACCCTCGNACCGATGGCTTGCCTCCGA]
[-] EMBL BX468949 [TCTCCGGCTGAAAATTTACACACACGCACGCAATAGACTATTTACCCACGTATTTTAAACCACCCTGGAGCGTGCGTGGAGCAGGGAGAGAACTTATCCATTTTCTTTGTATGATATTGGCAACTTTATCTGTTTTTATACACTTATACAGTTTCGCCATTTAACCCTCGNACCGATGGCTTGCCTCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5483#1 ------------------------------------------------------------
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 TATCTATTTCTTAATTCGGGATATGACGCCTTTAACGCATTCGCTAGAGCGCAGTCTACA 60
consensus_5483#1 ------------------------------------------------------------
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 TCTTTTTCCCGTGCATGGGGGGGTTTTAGTGTGTGATTCCAGATTTTTATTTGTTTTCTC 120
consensus_5483#1 ------------------------------------------------------------
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 TGTTTTGTCACACCGATTCTTTCCACTTAAAAGATTTTTGTTTTTAGCATATCCTTCCTT 180
consensus_5483#1 ------------------------------------------------------------
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 CCCTATGCATTGATTTAGAAATGTCACAATTAAATTAGATTTAATCGTCCAAACACACAC 240
consensus_5483#1 ------------------------------------------------------------
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 ACAAACACATGTATGCTATTGGAAACCTATTCACATAAATAATAATAAACCTATCCCAGA 300
consensus_5483#1 ------------------------------------------------------------
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 GCGCGATTTCATCTCTTGGCTGTTGCGTACATTCGTTAGTGTTTGTGTTTATCTCTCCTA 360
consensus_5483#1 ------------------------------------------------------------
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 AGGGTGGGGGGAGAGAGGGCCGGATTTTGCATAGATGTCGTACTTACAATTTAAGAAACA 420
consensus_5483#1 ------------------------------------------------------------
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 AAACAAACAAAAAATAACGTAACAGCGACTTTGGAGGATAACACATCCAAATTGAACTCT 480
consensus_5483#1 -ACTCCTTCTCCTCACTCTTGCTAATCTGGTATGCGGGGCGTTTCACTTTCGTCTTTTTT 59
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 TACTCCTTCTCCTCACTCTTGCTAATCTGGTATGCGGGGCGTTTCACTTTCGTCTTTTTT 540
consensus_5483#1 TTTTCTTTTTTGGATTACTGGTCCATCACCCTCTTTCCGGCTGAAAATTTACACACACGC 119
consensus_5483#2 ---------------------------------TCTCCGGCTGAAAATTTACACACACGC 27
consensus_5483#0 TTTTCTTTTTTGGATTACTGGTCCATCACCCTCTTTCCGGCTGAAAATTTACACACACGC 600
* *************************
consensus_5483#1 ACGCAATAGACCATTTGCC-ACGTATTTTAAACCACC-TGGAGGGTGCGTGGAGCAGGGA 177
consensus_5483#2 ACGCAATAGACTATTTACCCACGTATTTTAAACCACCCTGGAGCGTGCGTGGAGCAGGGA 87
consensus_5483#0 ACGCAATAGACTATTTACC-ACGTATTTTAAACCACC-TGGAGCGTGCGTGGAGCAGGGA 658
*********** **** ** ***************** ***** ****************
consensus_5483#1 GAGAA-TTATCCTTTTTCTTTGTTTGATATTGGCAACTTTATCTGTTTTTAT---CTTAT 233
consensus_5483#2 GAGAACTTATCCATTTTCTTTGTATGATATTGGCAACTTTATCTGTTTTTATACACTTAT 147
consensus_5483#0 GAGAA-TTATCCATTTTCTTTGTATGATATTGGCAACTTTATCTGTTTTTAT---CTTAT 714
***** ****** ********** **************************** *****
consensus_5483#1 ACATTTTCGCCATTTTAACTAGTCTAAC-CGTTGCATTTTTTGTTGCGTGATTGTTGCAG 292
consensus_5483#2 ACAGTTTCGCCATTTAACCC--TCGNAC-CGATGGCTTGCCTCCGA-------------- 190
consensus_5483#0 ACATTTTCGCCATTTTAACTAGTCTAACGCGTTGCATTTTTTGTTGCGTGATTGTTGCAG 774
*** *********** * * ** ** ** ** ** *
consensus_5483#1 GACAACCGTTCCTCGCGC-AAGGGGAGAAAAAGGGTCTGAGGTTTGACCCTGTTCTTTAT 351
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 GACAACCGTTCCTCGCGCCAAGGGGAGAAAAAGGGTCTGAGGTTTGGCCCTGTTCTTTGT 834
consensus_5483#1 CGAAAGAAACACGCCGCAACTCAAAAAAGC-AGGCGAAATAGGAAAAAGGAAACAAATAT 410
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 CGAAAGAAACACGCCGCAACTCAAAAAAGNGAGGCAAAATAGGAAAAAATACACTCGTGG 894
consensus_5483#1 TAGATAAAAAAAGCTACTTTCTCTCTCGCTCTAAACGAAATCTACGCAAAAAATGTACAA 470
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 CNGATCTGCCT------------------------------------------------- 905
consensus_5483#1 CAAACACATAGAAACTAATCTTCTCATCGAACACATTGAACTAAAAAAAGGACTGTGTTT 530
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 ------------------------------------------------------------
consensus_5483#1 AGCAGTTAGCATACGTTGGTTGTTTTTTTTCTTCTTCTCGTTAAAGTTTATTCCCCCTTT 590
consensus_5483#2 ------------------------------------------------------------
consensus_5483#0 ------------------------------------------------------------
consensus_5483#1 TTTCTATTACCCGG 604
consensus_5483#2 --------------
consensus_5483#0 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||