These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1102 fasta sequence [CCGATCCGGTGTACCGGGAAACGGCCACACAGCTTCTCTCGATTCCAACGAAAACGGTCGGTGCACCAGGTTTGCTGTATGTGTGCCAGCGTGAAATGGCCGCCGTCGCTCCACACGATCGAAACGTGAACATAATTGGATCGGACGATGCAACCACATGCATTATCGTCGTAGTGCGGCATTCCGGTTCCGGTGCGATCGCACTGGCACACCTGGACGGCAACGGTACGGACGAGGCCGTGTCGGCAATGGTCGCCCGCGTCCAGGAGCTTGCGTTCGGCTACCCGGAAGGCCGCATCGAGCTACAGCTTATTGGAGGCTTCAGCGATCCGCAGGGCTATGCGGAAGATCTGTTCAGTAATATTATGCAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCATGCGTCGGCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCGTGAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTTAGGACAATCAGTTCCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCGGCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTGGGCGAGTCGATTTCTTCGCTTACGACAGAGGACACAACGTTGTATACCGCTTCCGTAGATTGATTTCCCCCAGAGCCCCCGTCGTAGTAGTGTAGTAGTGTTGTACTGCTTTCCCTTGTTTTCTCCCAATCCAAACATATTTATCAAAAACAAAACCTGTCGTGCCAATATATGAATGCGGAAAGGCAAAATGTTATAATATTATGATTCCCGCGCAGCTTGTTA] [+] EMBL BM577247 [CCGATCCGGTGTACCGGGAAACGGCCACACAGCTTCTCTCGATTCCAACGAAAACGGTCGGTGCACCAGGTTTGCTGTATGTGTGCCAGCGTGAAATGGCCGCCGTCGCTCCACACGATCGAAACGTGAACATAATTGGATCGGACGATGCAACCACATGCATTATCGTCGTAGTGCGGCATTCCGGTTCCGGTGCGATCGCACTGGCACACCTGGACGGCAACGGTACGGACGAGGCCGTGTCGGCAATGGTCGCCCGCGTCCAGGAGCTTGCGTTCGGCTACCCGGAAGGCCGCATCGAGCTACAGCTTATTGGAGGCTTCAGCGATCCGCAGGGCTATGCGGAAGATCTGTTCAGTAATATTATGCAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCATGCGTCGGCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCGTGAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGA ] [+] EMBL BX616609 [ ACCCAGTCGTGCGTCGGCGAGCTCAACACAATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCGTGAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCCCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTTAGGACAATCAGTTCCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCGGCTGCTGGACACCGGTTCGGTA ] [+] EMBL BX620996 [ CAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGAGTGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTCAGGACAATCAGTTTCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCGGCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTGGGCGAGTCGATTTCTTCGCTTACGACAGAGGACACAACGTTGTATACCGCTTCCGTAGATTGATTTCCCCCAGAGCCCCCGTCGTAGTAGTGTAGTAGTGTTGTACTGCTTTCCCTTGTTTTCTCCCAATCCAAACATATTTATCAAAAACAAAACCTGTCGTGCCAATATATGAATGCGGAAAGGCAAAATGTTATAATATTATGATTCCCGCGCAGCTTGTTA] consensusID : consensus_5486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGCCCACGCGTCCGAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCGTGCGTCGGCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCGTAAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTCAGGACAATCAGTTCCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCGGCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTTGACGGGCCGATTTCTTCGCTCACGACAGAGGACACAACGTTGTATACCGCATTCCGTAGATTGATTTCCCCCAGAGCCCCCGTCGTAGTAGTGGAAGTAGTGTTGTACTGCTTTCCCTTGGTTTCTTCCAATCCAAACATATTTAT] [+] EMBL BM577491 [CCGCCCACGCGTCCGAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCGTGCGTCGGCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCGTAAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTCAGGACAATCAGTTCCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCGGCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTTGACGGGCCGATTTCTTCGCTCACGACAGAGGACACAACGTTGTATACCGCATTCCGTAGATTGATTTCCCCCAGAGCCCCCGTCGTAGTAGTGGAAGTAGTGTTGTACTGCTTTCCCTTGGTTTCTTCCAATCCAAACATATTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5486#0 CCGATCCGGTGTACCGGGAAACGGCCACACAGCTTCTCTCGATTCCAACGAAAACGGTCG 60 consensus_5486#1 ------------------------------------------------------------ consensus_5486#0 GTGCACCAGGTTTGCTGTATGTGTGCCAGCGTGAAATGGCCGCCGTCGCTCCACACGATC 120 consensus_5486#1 ------------------------------------------------------------ consensus_5486#0 GAAACGTGAACATAATTGGATCGGACGATGCAACCACATGCATTATCGTCGTAGTGCGGC 180 consensus_5486#1 ------------------------------------------------------------ consensus_5486#0 ATTCCGGTTCCGGTGCGATCGCACTGGCACACCTGGACGGCAACGGTACGGACGAGGCCG 240 consensus_5486#1 ------------------------------------------------------------ consensus_5486#0 TGTCGGCAATGGTCGCCCGCGTCCAGGAGCTTGCGTTCGGCTACCCGGAAGGCCGCATCG 300 consensus_5486#1 ------------------------------------------------------------ consensus_5486#0 AGCTACAGCTTATTGGAGGCTTCAGCGATCCGCAGGGCTATGCGGAAGATCTGTTCAGTA 360 consensus_5486#1 ------------------------------------------------------CCGCCC 6 * consensus_5486#0 ATATTATGCAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCATGCGTCG 420 consensus_5486#1 ACGCGTCCGAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCGTGCGTCG 66 * ******************************************* ******* consensus_5486#0 GCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCG 480 consensus_5486#1 GCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCG 126 ************************************************************ consensus_5486#0 TGAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGC 540 consensus_5486#1 TAAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGC 186 * ********************************************************** consensus_5486#0 CACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCG 600 consensus_5486#1 CACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCG 246 ************************************************************ consensus_5486#0 CTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTT 660 consensus_5486#1 CTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTT 306 ************************************************************ consensus_5486#0 GGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAAC 720 consensus_5486#1 GGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAAC 366 ************************************************************ consensus_5486#0 CGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTTAGGACAATCAGTTCC 780 consensus_5486#1 CGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTCAGGACAATCAGTTCC 426 ******************************************** *************** consensus_5486#0 CGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCG 840 consensus_5486#1 CGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCG 486 ************************************************************ consensus_5486#0 GCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTGGGCGAGTCGATTTCTTCGCTTAC 900 consensus_5486#1 GCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTTGACGGGCCGATTTCTTCGCTCAC 546 ************************************ * ** * ************* ** consensus_5486#0 GACAGAGGACACAACGTTGTATACCGC-TTCCGTAGATTGATTTCCCCCAGAGCCCCCGT 959 consensus_5486#1 GACAGAGGACACAACGTTGTATACCGCATTCCGTAGATTGATTTCCCCCAGAGCCCCCGT 606 *************************** ******************************** consensus_5486#0 CGTAGTAGTGTA-GTAGTGTTGTACTGCTTTCCCTTGTTTTCTCCCAATCCAAACATATT 1018 consensus_5486#1 CGTAGTAGTGGAAGTAGTGTTGTACTGCTTTCCCTTGGTTTCTTCCAATCCAAACATATT 666 ********** * ************************ ***** **************** consensus_5486#0 TATCAAAAACAAAACCTGTCGTGCCAATATATGAATGCGGAAAGGCAAAATGTTATAATA 1078 consensus_5486#1 TAT--------------------------------------------------------- 669 *** consensus_5486#0 TTATGATTCCCGCGCAGCTTGTTA 1102 consensus_5486#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||