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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1121 fasta sequence
[CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTATTAGTATATTTATTGCTAACATCACTACACTAGAAAATAAACAGGTAAGAAGTGAACATAACCGTTCGAGGTATAGTTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTGTCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTACTATGAGAGAAAAAAAAACAAACACAAAACAGGAACAGTAATGTTTGTTTTCTTTTTTTGCATTTGCAGCTGATTTATGAAAGTAACGAAAGAAAACAATATAAAACAAAAACAAAAAAAGCAAAATATATTCTATAGTAACAAGTAGAAACTCTTAGGAAAGTAACACAACAAAACAAGAAGAAAATGTCCATTGCAAAATGCTAACAGCGACAATTCGTTACGATTGTCTTCGATGATCAGAAAAATTATTATATATAAAAAGAAAAAAAACATATTATCTTTATAACAAAGAAAATTAACAAAATAAAAGTTAAAAATACACTTTT]
[+] EMBL BX622817 [CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTATTAGTATATTTATTGCTAACATCACTACACTAGAAAATAAACAGGTAAGAAGTGAACATAACCGTTCGAGGTATAGTTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGANGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTGTCACTGATAGACATTCACTAAACGCGGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTA ]
[+] EMBL BX617873 [ ATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTATTAGTATATTTATTGCTAACATCACTACACTAGAAAATAAACAGGTAAGAAGTGAACATAACCGTTCGAGGTATAGTTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTATCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTACTA ]
[+] EMBL BM577490 [ ccgAGTGAACATAACCGTTCGAGGTATAGCTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTGTCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTACTATGAGAGAAAAAAAAACAAACACAAAACAGGAACAGTAATGTTTGTTTTCTTTTTTTGCATTTGCAGCTGATTTATGAAAGTAACGAAAGAAAACAATATAAAACAAAAACAAAAAAAGCAAAATATATTCTATAGTAACAAGTAGAAACTCTTAGGAAAGTAACACAACAAAACAAGAAGAAAATGTCCATTGCAAAATGCTAACAGCGACAATTCGTTACGATTGTCTTCGATGATCAGAAAAATTATTATATATAAAAAGAAAAAAAACATATTATCTTTATAACAAAGAAAATTAACAAAATAAAAGTTAAAAATACACTTTT]
consensusID : consensus_5494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence
[CGAGGCAGAATCGGCACGTAGGTGATATTGAACATTTGCAAAACTGCTGCTAAAAGCTAACAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTCATTAGTATATTCGAGTTGGCTGAAGCATCACTACAGCTAGAAAATAAACAGGTAAGAAGTGAACATANACCGTTCGAGGGTATAGGTTCGGTGAANAAACTGGATAATAAACGCGGAAAAACNGCTAGGACAAANAAGTGCCAGGACATAGGCCNAACCAAGCGAGACAGAACAAAGGAATAACGCACGGGGAATCACAGTTACANAN]
[+] EMBL BX468331 [CGAGGCAGAATCGGCACGTAGGTGATATTGAACATTTGCAAAACTGCTGCTAAAAGCTAACAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTCATTAGTATATTCGAGTTGGCTGAAGCATCACTACAGCTAGAAAATAAACAGGTAAGAAGTGAACATANACCGTTCGAGGGTATAGGTTCGGTGAANAAACTGGATAATAAACGCGGAAAAACNGCTAGGACAAANAAGTGCCAGGACATAGGCCNAACCAAGCGAGACAGAACAAAGGAATAACGCACGGGGAATCACAGTTACANAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5494#0 ------------------------------------------------------------
consensus_5494#1 CGAGGCAGAATCGGCACGTAGGTGATATTGAACATTTGCAAAACTGCTGCTAAAAGCTAA 60
consensus_5494#0 CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAG 60
consensus_5494#1 CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAG 120
************************************************************
consensus_5494#0 GACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGA 120
consensus_5494#1 GACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGA 180
************************************************************
consensus_5494#0 GGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAG 180
consensus_5494#1 GGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAG 240
************************************************************
consensus_5494#0 TACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAA 240
consensus_5494#1 TACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAA 300
************************************************************
consensus_5494#0 CCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGC 300
consensus_5494#1 CCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGC 360
************************************************************
consensus_5494#0 AGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATA 360
consensus_5494#1 AGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATA 420
************************************************************
consensus_5494#0 CATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAA 420
consensus_5494#1 CATGCTTAATAATATACACGTCACACCTTCTTTT-GTTGCAACACACACTCATTCAGCAA 479
********************************** *************************
consensus_5494#0 ACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATT- 479
consensus_5494#1 ACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTC 539
***********************************************************
consensus_5494#0 ATTAGTATATTTA---TTGCTAA--CATCACTACA-CTAGAAAATAAACAGGTAAGAAGT 533
consensus_5494#1 ATTAGTATATTCGAGTTGGCTGAAGCATCACTACAGCTAGAAAATAAACAGGTAAGAAGT 599
*********** * *** * ********** ************************
consensus_5494#0 GAACATAA-CCGTTCGAGG-TATAG--TTGGTGAAAA---CTGATAT--AACGCGAAAA- 583
consensus_5494#1 GAACATANACCGTTCGAGGGTATAGGTTCGGTGAANAAACTGGATAATAAACGCGGAAAA 659
******* ********** ***** * ****** * **** ****** ***
consensus_5494#0 --CGCTAGAC--AAAAAGTGC-AGGACATAGCCAACAACAAAAGAAAAAGGAATAACACG 638
consensus_5494#1 ACNGCTAGGACAAANAAGTGCCAGGACATAGGCCNAACCAAGCGAGACAGAACAAAGGAA 719
***** ** ****** ********* * * *** ** * ** * **
consensus_5494#0 GATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCA 698
consensus_5494#1 TAACGC-ACGGGGAATCACAGTTACANAN------------------------------- 747
* * * * *****
consensus_5494#0 TCGAGTTGTCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATT 758
consensus_5494#1 ------------------------------------------------------------
consensus_5494#0 TACAGGATAGCTGCCTGATAGTCTAGGACTACTACTATGAGAGAAAAAAAAACAAACACA 818
consensus_5494#1 ------------------------------------------------------------
consensus_5494#0 AAACAGGAACAGTAATGTTTGTTTTCTTTTTTTGCATTTGCAGCTGATTTATGAAAGTAA 878
consensus_5494#1 ------------------------------------------------------------
consensus_5494#0 CGAAAGAAAACAATATAAAACAAAAACAAAAAAAGCAAAATATATTCTATAGTAACAAGT 938
consensus_5494#1 ------------------------------------------------------------
consensus_5494#0 AGAAACTCTTAGGAAAGTAACACAACAAAACAAGAAGAAAATGTCCATTGCAAAATGCTA 998
consensus_5494#1 ------------------------------------------------------------
consensus_5494#0 ACAGCGACAATTCGTTACGATTGTCTTCGATGATCAGAAAAATTATTATATATAAAAAGA 1058
consensus_5494#1 ------------------------------------------------------------
consensus_5494#0 AAAAAAACATATTATCTTTATAACAAAGAAAATTAACAAAATAAAAGTTAAAAATACACT 1118
consensus_5494#1 ------------------------------------------------------------
consensus_5494#0 TTT 1121
consensus_5494#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||