These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGTACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTCCGTACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCACGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGCGTACAGCATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGATGCGATCGACTTTGTGCTGACCAACTTTGCCGAGATGAACAAGCTGTGGG] [+] EMBL BM578023 [CCGCGGACGCGTGGGCGGACGCGTGGGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGTACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTCCGTACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCACGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGCGTACAGCATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGATGCGATCGACTTTGTGCTGACCAA ] [+] EMBL BM615769 [ ccgAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTCCGTACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCACGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGCGTACAGCATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGATGCGATCGACTTTGTGCTGACCAACTTTGCCGAGATGAACAAGCTGTGGG] consensusID : consensus_5499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [TCCGAAGAACCTAATTACAGAAGAAGCAGCAGAGATAAAAGAGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGCGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGTACAGCATCCCTTGGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGA] [+] EMBL BM601087 [TCCGAAGAACCTAATTACAGAAGAAGCAGCAGAGATAAAAGAGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGCGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGTACAGCATCCCTTGGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGA] consensusID : consensus_5499#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGCCCACGCGTCCGGAAGAAGCAGCAGAGATAAAAGAGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGTACAGCATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGA] [+] EMBL BM655393 [CCGCCCACGCGTCCGGAAGAAGCAGCAGAGATAAAAGAGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGTACAGCATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5499#1 TCCGAAGAACCTAATTACAGAAGAAGCAGCAG-AGATAAAAGAGTGGATAGATAATAAAT 59 consensus_5499#2 ----CCGCCCACGCGTCCGGAAGAAGCAGCAG-AGATAAAAGAGTGGATAGATAATAAAT 55 consensus_5499#0 -----------------CCGCGGACGCGTGGGCGGACGCGTGGGTGGATAGATAATAAAT 43 * * ** ** * ** * ***************** consensus_5499#1 AATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGAT 119 consensus_5499#2 AATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGAT 115 consensus_5499#0 AATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGAT 103 ************************************************************ consensus_5499#1 GACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAAT 179 consensus_5499#2 GACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAAT 175 consensus_5499#0 GACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGTACAAGGACCGGCTAAT 163 ******************************************* **************** consensus_5499#1 GGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCC 239 consensus_5499#2 GGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCC 235 consensus_5499#0 GGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTCCGTACATCGCTGCTGTCGCC 223 *************************************** ** ***************** consensus_5499#1 CAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTA 299 consensus_5499#2 CAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTA 295 consensus_5499#0 CAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTA 283 ************************************************************ consensus_5499#1 CCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGCGCCGGATCTGTACGAGCATGTGCAGTA 359 consensus_5499#2 CCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTA 355 consensus_5499#0 CCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTA 343 ******************************** *************************** consensus_5499#1 CGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAA 419 consensus_5499#2 CGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAA 415 consensus_5499#0 CGCGGGCAATATCGTGCCACGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAA 403 ****************** ***************************************** consensus_5499#1 GACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGT 479 consensus_5499#2 GACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGT 475 consensus_5499#0 GACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGCGT 463 ********************************************************* ** consensus_5499#1 ACAGCATCCCTTGGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACA 539 consensus_5499#2 ACAGCATCCCTTG-CGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACA 534 consensus_5499#0 ACAGCATCCCTTG-CGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACA 522 ************* ********************************************** consensus_5499#1 TCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCG 599 consensus_5499#2 TCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCG 594 consensus_5499#0 TCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCG 582 ************************************************************ consensus_5499#1 A-------------------------------------------------- 600 consensus_5499#2 A-------------------------------------------------- 595 consensus_5499#0 ATGCGATCGACTTTGTGCTGACCAACTTTGCCGAGATGAACAAGCTGTGGG 633 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||