Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5506 cluster # 5506       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5506#0 length = 669 sequences # 2  
consensus_5506#1 length = 579 sequences # 2  

consensusID : consensus_5506#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 669
fasta sequence
                              [CCGTGTTGTTACGCTCCTTTTCCTAGCTAAACGTAGGTAAAAAGCATTTTCCTGTCGATTTATTGCCGTTTTGTGTCTCTAGTTTGAGTAAGTGTTCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTTCGACCGCTGAACGTATCCAACGACAACGAGTTCAGTGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTTCCACCGCCCCACAAACAACGCCGAAACCGGCACCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATGTTTGCGGCGGCCAGCAAGCAACAACCCCCGGTAAAGGAGGAAAAACAATCACCACCCGCAAAGCCACAGGTAAAACCGGAACC]

[+] EMBL BM584023             [CCGTGTTGTTACGCTCCTTTTCCTAGCTAAACGTAGGTAAAAAGCATTTTCCTGTCGATTTATTGCCGTTTTGTGTCTCTAGTTTGAGTAAGTGTTCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTTCGACCGCTGAACGTATCCAACGACAACGAGTTCAGTGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTTCCACCGCCCCACAAACAACGCCGAAACCGGCACCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATGTTTGCGGCGGCCAGCAAGCAACAACCCCCGGTAAAGGAGGAAAAACAATCACCACCCGCAAAGCCACAGGTAAAACCGGAACC]
[+] EMBL BM578481             [                                                                                                                                                                                                   CACGTGGAGCTTGGACAGCAAATAATCGCTGGAAGTGCTGCAGAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCATCGATAAGAATGGCAACGTTTTCGTCACTCTAGCAAATGAGGAAAAGTTAGAAGAAATCAGCAAAACCTAC                                                                                                                                                                                                                                                                                                           ]


>consensus_5506#0 CCGTGTTGTTACGCTCCTTTTCCTAGCTAAACGTAGGTAAAAAGCATTTTCCTGTCGATT TATTGCCGTTTTGTGTCTCTAGTTTGAGTAAGTGTTCTTAGCTATGGATGACGAGCTGCT AAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTAC CCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAA ATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGT CGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAG CAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTTCG ACCGCTGAACGTATCCAACGACAACGAGTTCAGTGTGATCCGTTTACGGTTGGAATCGCA AAAGCGTCAAATAGAACAAGCATCTTCTTCCACCGCCCCACAAACAACGCCGAAACCGGC ACCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATGTTTGCGGCGGCCAG CAAGCAACAACCCCCGGTAAAGGAGGAAAAACAATCACCACCCGCAAAGCCACAGGTAAA ACCGGAACC



consensusID : consensus_5506#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 579
fasta sequence
                              [CCGCCCACGCGTCCGGCTAAACGTTGGTGGAAAAGCATTTTCCTGTCGATTTATTACCGTTTTCTGTGTCTCTAGTTTGAGTTGGTGTCCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTGCGACCGCTGAACGTGTCCAACGACAACGAGTTCAATGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTACAACCGCCCCACAAACAACGCCGAAACCGGCTCCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATG]

[+] EMBL BM647154             [CCGCCCACGCGTCCGGCTAAACGTTGGTGGAAAAGCATTTTCCTGTCGATTTATTACCGTTTTCTGTGTCTCTAGTTTGAGTTGGTGTCCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTGCGACCGCTGAACGTGTCCAACGACAACGAGTTCAATGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTACAACCGCCCCACAAACAACGCCGAAACCGGCTCCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATG]
[+] EMBL CNS0942N             [                                                                                                ATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATCGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAAC                                                                                                                                                                                                                                                                                                                          ]


>consensus_5506#1 CCGCCCACGCGTCCGGCTAAACGTTGGTGGAAAAGCATTTTCCTGTCGATTTATTACCGT TTTCTGTGTCTCTAGTTTGAGTTGGTGTCCTTAGCTATGGATGACGAGCTGCTAAAAACG TGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGG ATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTT GAAGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAA AATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACC TACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTGCGACCGCTG AACGTGTCCAACGACAACGAGTTCAATGTGATCCGTTTACGGTTGGAATCGCAAAAGCGT CAAATAGAACAAGCATCTTCTACAACCGCCCCACAAACAACGCCGAAACCGGCTCCCGCG CCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5506#0      CCGTGTTGTTACGCTCCTTTTCCTAGCTAAACGTAGGTA-AAAAGCATTTTCCTGTCGAT 59
consensus_5506#1      ----------CCGCCCACGCGTCCGGCTAAACGTTGGTGGAAAAGCATTTTCCTGTCGAT 50
                                 *** *      *  ********* ***  ********************

consensus_5506#0      TTATTGCCGTTTT--GTGTCTCTAGTTTGAGTAAGTGTTCTTAGCTATGGATGACGAGCT 117
consensus_5506#1      TTATTACCGTTTTCTGTGTCTCTAGTTTGAGTTGGTGTCCTTAGCTATGGATGACGAGCT 110
                      ***** *******  *****************  **** *********************

consensus_5506#0      GCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTC 177
consensus_5506#1      GCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTC 170
                      ************************************************************

consensus_5506#0      TACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCA 237
consensus_5506#1      TACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCA 230
                      ************************************************************

consensus_5506#0      GAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGG 297
consensus_5506#1      GAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGG 290
                      ************ ***********************************************

consensus_5506#0      CGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAAT 357
consensus_5506#1      CGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAAT 350
                      ************************************************************

consensus_5506#0      CAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGT 417
consensus_5506#1      CAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGT 410
                      ************************************************************

consensus_5506#0      TCGACCGCTGAACGTATCCAACGACAACGAGTTCAGTGTGATCCGTTTACGGTTGGAATC 477
consensus_5506#1      GCGACCGCTGAACGTGTCCAACGACAACGAGTTCAATGTGATCCGTTTACGGTTGGAATC 470
                       ************** ******************* ************************

consensus_5506#0      GCAAAAGCGTCAAATAGAACAAGCATCTTCTTCCACCGCCCCACAAACAACGCCGAAACC 537
consensus_5506#1      GCAAAAGCGTCAAATAGAACAAGCATCTTCTACAACCGCCCCACAAACAACGCCGAAACC 530
                      ******************************* * **************************

consensus_5506#0      GGCACCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATGTTTGCGGCGGC 597
consensus_5506#1      GGCTCCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATG----------- 579
                      *** *********************************************           

consensus_5506#0      CAGCAAGCAACAACCCCCGGTAAAGGAGGAAAAACAATCACCACCCGCAAAGCCACAGGT 657
consensus_5506#1      ------------------------------------------------------------
                                                                                  

consensus_5506#0      AAAACCGGAACC 669
consensus_5506#1      ------------
                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)