These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence [CCGTGTTGTTACGCTCCTTTTCCTAGCTAAACGTAGGTAAAAAGCATTTTCCTGTCGATTTATTGCCGTTTTGTGTCTCTAGTTTGAGTAAGTGTTCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTTCGACCGCTGAACGTATCCAACGACAACGAGTTCAGTGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTTCCACCGCCCCACAAACAACGCCGAAACCGGCACCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATGTTTGCGGCGGCCAGCAAGCAACAACCCCCGGTAAAGGAGGAAAAACAATCACCACCCGCAAAGCCACAGGTAAAACCGGAACC] [+] EMBL BM584023 [CCGTGTTGTTACGCTCCTTTTCCTAGCTAAACGTAGGTAAAAAGCATTTTCCTGTCGATTTATTGCCGTTTTGTGTCTCTAGTTTGAGTAAGTGTTCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTTCGACCGCTGAACGTATCCAACGACAACGAGTTCAGTGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTTCCACCGCCCCACAAACAACGCCGAAACCGGCACCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATGTTTGCGGCGGCCAGCAAGCAACAACCCCCGGTAAAGGAGGAAAAACAATCACCACCCGCAAAGCCACAGGTAAAACCGGAACC] [+] EMBL BM578481 [ CACGTGGAGCTTGGACAGCAAATAATCGCTGGAAGTGCTGCAGAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCATCGATAAGAATGGCAACGTTTTCGTCACTCTAGCAAATGAGGAAAAGTTAGAAGAAATCAGCAAAACCTAC ] consensusID : consensus_5506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence [CCGCCCACGCGTCCGGCTAAACGTTGGTGGAAAAGCATTTTCCTGTCGATTTATTACCGTTTTCTGTGTCTCTAGTTTGAGTTGGTGTCCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTGCGACCGCTGAACGTGTCCAACGACAACGAGTTCAATGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTACAACCGCCCCACAAACAACGCCGAAACCGGCTCCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATG] [+] EMBL BM647154 [CCGCCCACGCGTCCGGCTAAACGTTGGTGGAAAAGCATTTTCCTGTCGATTTATTACCGTTTTCTGTGTCTCTAGTTTGAGTTGGTGTCCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTGCGACCGCTGAACGTGTCCAACGACAACGAGTTCAATGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTACAACCGCCCCACAAACAACGCCGAAACCGGCTCCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATG] [+] EMBL CNS0942N [ ATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATCGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5506#0 CCGTGTTGTTACGCTCCTTTTCCTAGCTAAACGTAGGTA-AAAAGCATTTTCCTGTCGAT 59 consensus_5506#1 ----------CCGCCCACGCGTCCGGCTAAACGTTGGTGGAAAAGCATTTTCCTGTCGAT 50 *** * * ********* *** ******************** consensus_5506#0 TTATTGCCGTTTT--GTGTCTCTAGTTTGAGTAAGTGTTCTTAGCTATGGATGACGAGCT 117 consensus_5506#1 TTATTACCGTTTTCTGTGTCTCTAGTTTGAGTTGGTGTCCTTAGCTATGGATGACGAGCT 110 ***** ******* ***************** **** ********************* consensus_5506#0 GCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTC 177 consensus_5506#1 GCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTC 170 ************************************************************ consensus_5506#0 TACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCA 237 consensus_5506#1 TACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCA 230 ************************************************************ consensus_5506#0 GAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGG 297 consensus_5506#1 GAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGG 290 ************ *********************************************** consensus_5506#0 CGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAAT 357 consensus_5506#1 CGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAAT 350 ************************************************************ consensus_5506#0 CAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGT 417 consensus_5506#1 CAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGT 410 ************************************************************ consensus_5506#0 TCGACCGCTGAACGTATCCAACGACAACGAGTTCAGTGTGATCCGTTTACGGTTGGAATC 477 consensus_5506#1 GCGACCGCTGAACGTGTCCAACGACAACGAGTTCAATGTGATCCGTTTACGGTTGGAATC 470 ************** ******************* ************************ consensus_5506#0 GCAAAAGCGTCAAATAGAACAAGCATCTTCTTCCACCGCCCCACAAACAACGCCGAAACC 537 consensus_5506#1 GCAAAAGCGTCAAATAGAACAAGCATCTTCTACAACCGCCCCACAAACAACGCCGAAACC 530 ******************************* * ************************** consensus_5506#0 GGCACCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATGTTTGCGGCGGC 597 consensus_5506#1 GGCTCCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATG----------- 579 *** ********************************************* consensus_5506#0 CAGCAAGCAACAACCCCCGGTAAAGGAGGAAAAACAATCACCACCCGCAAAGCCACAGGT 657 consensus_5506#1 ------------------------------------------------------------ consensus_5506#0 AAAACCGGAACC 669 consensus_5506#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||