These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence [CCACTGGTTTTTTATGGGTTCATTGGTTAGCCGAACGTTCC-GCAAACATGAGCGGTCCCGTAGCGGAATTTGTGAAGAGCGCTATCGCGAAGGATAAGGTGGTTATCTTCTCCAAGACCTACTGCCCTTACTGTACCATGGCAAAGGAGCCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGAGCTGGACAAGCGCAACGATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGTGCCCGCACGGTAAGTGGTCAACAATGACATCATTTGCACTGCTGATTATGGCCCGTCAGCCTTCATGAATCATGCCTTTATCTGATTTCAATGTCTCTCTCTCGCGTGTCTTCTCGTCTCCCAAAAACAGGTGCCGCGCGTGTTTATTGGCGGCAACTTTGTCGGTGGCGGTACCGACATCAAGAAGATGTACGACGACGGTCGGTTACAAAAAATGTTGGCCTAAAACCACCACTATCCGCTCGAAGCCGCTTTCTACTTCTCCATCCTTCCAGTCGTGTAAGCGTGTAAAGTGTAAAGACAAACCGCGTTTTATTAAGACTCTCTCTGTTGCAAAGGAATCGTTCTGTTCGTGGGGCCGAAGCACAATAAAACTAACTGATAGTTGGCTAGATAAGCGAAACCGCACTTGTCGTCACACCCTTGATTACGGTGCGTTCAGTAAAAAAAAAAAAAAAAAAGGT] [+] EMBL CNS091XS [CCACTGGTTTTTTATGGGTTCATTGGTTAGCCGAACGTTCC GCAAACATGAGCGGTCCCGTAGCGGAATTTGTGAAGAGCGCTATCGCGAAGGATAAGGTGGTTATCTTCTCCAAGACCTACTGCCCTTACTGTACCATGGCAAAGGAGCCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGAGCTGGACAAGCGCAACGATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGTGCCCGCACGGTAAGTGGTCAACAATGACATCATTTGCACTGCTGATTATGGCCCGTCAGCCTTCATGAATCATGCCTTTATCTGATTTCAATGTCTCTCTCTCGCGTGTCTTCTCGTCTCCCAAAAACAGGTGCCGCGCGTGTTTATTGGCGGCAACTTTGTCGGTGGCGGTACCGACATCAAGAAGATGTACGACGACGGTCGGTTACAAAAAATGTTGGCCTAAAACCACCACTATCCGCTCGAAGCCGCTTTCTACTTCTCCATCCTTCCAGTCGTGTAAGCGTGTAAAGTGTAAAGACAAACCGCGTTTTATTAAGACTCTCTCTGTTGCAAAGGAATCGTTCTGTTCGTGGGGCCGAAGCACAATAAAACTAACTGATAGTTGGCTAGATAAGCGAAACCGCACTTGTCGTCACACCCTTGATTACGGTGCGTTCAGTAAAAAAA ] [-] EMBL CNS091XT [ aagCGTTCCAGCAAACATGAGCGGTCCCGTAGCGGAATTTGTGAAGAGCGCTATCGCGAAGGATAAGGTGGTTATCTTCTCCAAGACCTACTGCCCTTACTGTACCATGGCAAAGGAGCCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGAGCTGGACAAGCGCAACGATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGTGCCCGCACGGTAAGTGGTCAACAATGACATCATTTGCACTGCTGATTATGGCCCGTCAGCCTTCATGAATCATGCCTTTATCTGATTTCAATGTCTCTCTCTCGCGTGTCTTCTCGTCTCCCAAAAACAGGTGCCGCGCGTGTTTATTGGCGGCAACTTTGTCGGTGGCGGTACCGACATCAAGAAGATGTACGACGACGGTCGGTTACAAAAAATGTTGGCCTAAAACCACCACTATCCGCTCGAAGCCGCTTTCTACTTCTCCATCCTTCCAGTCGTGTAAGCGTGTAAAGTGTAAAGACAAACCGCGTTTTATTAAGACTCTCTCTGTTGCAAAGGAATCGTTCTGTTCGTGGGGCCGAAGCACAATAAAACTAACTGATAGTTGGCTAGATAAGCGAAACCGCACTTGTCGTCACACCCTTGATTACGGTGCGTTCAGTAAAAAAAAAAAAAAAAAAGGT] consensusID : consensus_5516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [GCAAGAATCGCCACGAGGTCTAAACGCAGCCGCAGTTCGTTTTACTGGGTTCATTATGGTTAGCCGAAGCGTCCAGNCAACATNAGCGGTCCGTANCGGAATTTGTGAAGAGNCGCTATCCGCGAAGGATAAGGTGGGTTATCTTCTCCAAGAACTACTGGCCTTACTGTACCATGGGGACAAGGAGGTGTGTGATATTCCGGTGTTTAATGTCGCCTTCNATAGNNCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGGAGCTGNGACAAGCTGTAACGATGTGTGACGAGATTCAGTCCGNACCTCGGCGAGCTTGACCGGTGCCCGCACNGGTGCCGCGCGTGTTTCATTTGGCGG] [+] EMBL BX469156 [GCAAGAATCGCCACGAGGTCTAAACGCAGCCGCAGTTCGTTTTACTGGGTTCATTATGGTTAGCCGAAGCGTCCAGNCAACATNAGCGGTCCGTANCGGAATTTGTGAAGAGNCGCTATCCGCGAAGGATAAGGTGGGTTATCTTCTCCAAGAACTACTGGCCTTACTGTACCATGGGGACAAGGAGGTGTGTGATATTCCGGTGTTTAATGTCGCCTTCNATAGNNCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGGAGCTGNGACAAGCTGTAACGATGTGTGACGAGATTCAGTCCGNACCTCGGCGAGCTTGACCGGTGCCCGCACNGGTGCCGCGCGTGTTTCATTTGGCGG] consensusID : consensus_5516#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 207 fasta sequence [ATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGGGCCCGCACGGTGCCGCGCGTGTTCATTGGCGGCGATTTTGTCGGTGGCGGTACCGACATCAACAACATGTACGACGACGGTCGGTTACACAAAATGTTGGCCTATAACCACCACTATCCGCTCGAAGCCGCTTTCTACTCTTCCATTCTTCCAGCCGTGTAAGCGT] [+] EMBL BM579277 [ATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGGGCCCGCACGGTGCCGCGCGTGTTCATTGGCGGCGATTTTGTCGGTGGCGGTACCGACATCAACAACATGTACGACGACGGTCGGTTACACAAAATGTTGGCCTATAACCACCACTATCCGCTCGAAGCCGCTTTCTACTCTTCCATTCTTCCAGCCGTGTAAGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5516#0 CCACTGGTTTTTTATGGGTTCATTGGTTAGCCGAACGTTCCGCAAACATGAGCGGTCCCG 60 consensus_5516#2 ------------------------------------------------------------ consensus_5516#1 ------------------------------------------------------------ consensus_5516#0 TAGCGGAATTTGTGAAGAGCGCTATCGCGAAGGATAAGGTGGTTATCTTCTCCAAGACCT 120 consensus_5516#2 ------------------------------------------------------------ consensus_5516#1 ------------------------------------------------------------ consensus_5516#0 ACTGCCCTTACTGTACCATGGCAAAGGAGCCCTTCAAGAAGCTGAACCAGGAGTACGCCT 180 consensus_5516#2 ------------------------------------------------------------ consensus_5516#1 ------------------------------------------------------------ consensus_5516#0 GCTACGAGCTGGACAAGCGCAACGATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGA 240 consensus_5516#2 ------------------------------------------------------------ consensus_5516#1 ------------------------------------------------------------ consensus_5516#0 CCGGTGCCCGCACGGTAAGTGGTCAACAATGACATCATTTGCACTGCTGATTATGGCCCG 300 consensus_5516#2 ------------------------------------------------------------ consensus_5516#1 ------------------------------------------------------------ consensus_5516#0 TCAGCCTTCATGAATCATGCCTTTATCTGATTTCAATGTCTCTCTCTCGCGTGTCTTCTC 360 consensus_5516#2 -------------------ATGGTGACGAGATTCA--GTCCGTCCTCGGCGAG-CTGACC 38 consensus_5516#1 -------------GCAAGAATCGCCACGAGGTCTAA-ACGCAGCCGCAGTTCGTTTTACT 46 * * * * * * * consensus_5516#0 GTCTCC--CAAAAACAGGTGCCGCGCGTGTTTATTGGCGGCAACTT-TGTCGGTGGCGGT 417 consensus_5516#2 GGGGCC--CGCA---CGGTGCCGCGCGTGTTCATTGGCGGCGATTT-TGTCGGTGGCGGT 92 consensus_5516#1 GGGTTCATTATGGTTAGCCGAAGCGTCCAGNCAACATNAGCGGTCCGTANCGGAATTTGT 106 * * * * *** * ** * *** ** consensus_5516#0 A-----CCGACATCAAGAAGATGTACGACGA-CGGTCGGTTACAAAAAATGTTGGCCTAA 471 consensus_5516#2 A-----CCGACATCAACAACATGTACGACGA-CGGTCGGTTACACAAAATGTTGGCCTAT 146 consensus_5516#1 GAAGAGNCGCTATCCGCGAAGGATAAGGTGGGTTATCTTCTCCAAGAACTACTGGCCTTA 166 ** *** * ** * * ** * ** ** * ****** consensus_5516#0 AACCACCACTATCCGCTCGAAGCCGCTTTCTACTT-----CTCCATCCTTCCAGTCGTGT 526 consensus_5516#2 AACCACCACTATCCGCTCGAAGCCGCTTTCTACTC-----TTCCATTCTTCCAGCCGTGT 201 consensus_5516#1 CTGTACCA-TGGGGACAAGGAGGTGTGTGATATTCCGGTGTTTAATGTCGCCTTCNATAG 225 **** * * * ** * * ** * * ** ** * consensus_5516#0 AAGCGTGTAAAGTGTAAAGACAAACCGCGTTTTATTAAGACTCTCTCTGTTGCAAAGGAA 586 consensus_5516#2 AAGCGT------------------------------------------------------ 207 consensus_5516#1 NNCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGGAGCTGNGACAAGCTGTAACGA 285 * * consensus_5516#0 TCGTTCTGTTCGTGGGGCCGAAGCACAATAAAACTAACTGATAGTTGGCTAGATAAGCGA 646 consensus_5516#2 ------------------------------------------------------------ consensus_5516#1 TGTGTGACGAGATTCAGTCCGNACCTCGGCGAGCTTGACCGGTGCCCGCACNGGTGCCGC 345 consensus_5516#0 AACCGCACTTGTCGTCACACCCTTGATTACGGTGCGTTCAGTAAAAAAAAAAAAAAAAAA 706 consensus_5516#2 ------------------------------------------------------------ consensus_5516#1 GCGTGTTTCATTTGGCGG------------------------------------------ 363 consensus_5516#0 GGT 709 consensus_5516#2 --- consensus_5516#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||