cluster # 5516

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Anopheles gambiae
cluster # 5516 cluster # 5516 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5516#0 length = 709 sequences # 2

consensus_5516#1 length = 363 sequences # 1
consensus_5516#2 length = 207 sequences # 1

consensusID : consensus_5516#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 709
fasta sequence

                              [CCACTGGTTTTTTATGGGTTCATTGGTTAGCCGAACGTTCC-GCAAACATGAGCGGTCCCGTAGCGGAATTTGTGAAGAGCGCTATCGCGAAGGATAAGGTGGTTATCTTCTCCAAGACCTACTGCCCTTACTGTACCATGGCAAAGGAGCCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGAGCTGGACAAGCGCAACGATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGTGCCCGCACGGTAAGTGGTCAACAATGACATCATTTGCACTGCTGATTATGGCCCGTCAGCCTTCATGAATCATGCCTTTATCTGATTTCAATGTCTCTCTCTCGCGTGTCTTCTCGTCTCCCAAAAACAGGTGCCGCGCGTGTTTATTGGCGGCAACTTTGTCGGTGGCGGTACCGACATCAAGAAGATGTACGACGACGGTCGGTTACAAAAAATGTTGGCCTAAAACCACCACTATCCGCTCGAAGCCGCTTTCTACTTCTCCATCCTTCCAGTCGTGTAAGCGTGTAAAGTGTAAAGACAAACCGCGTTTTATTAAGACTCTCTCTGTTGCAAAGGAATCGTTCTGTTCGTGGGGCCGAAGCACAATAAAACTAACTGATAGTTGGCTAGATAAGCGAAACCGCACTTGTCGTCACACCCTTGATTACGGTGCGTTCAGTAAAAAAAAAAAAAAAAAAGGT]

[+] EMBL CNS091XS             [CCACTGGTTTTTTATGGGTTCATTGGTTAGCCGAACGTTCC GCAAACATGAGCGGTCCCGTAGCGGAATTTGTGAAGAGCGCTATCGCGAAGGATAAGGTGGTTATCTTCTCCAAGACCTACTGCCCTTACTGTACCATGGCAAAGGAGCCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGAGCTGGACAAGCGCAACGATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGTGCCCGCACGGTAAGTGGTCAACAATGACATCATTTGCACTGCTGATTATGGCCCGTCAGCCTTCATGAATCATGCCTTTATCTGATTTCAATGTCTCTCTCTCGCGTGTCTTCTCGTCTCCCAAAAACAGGTGCCGCGCGTGTTTATTGGCGGCAACTTTGTCGGTGGCGGTACCGACATCAAGAAGATGTACGACGACGGTCGGTTACAAAAAATGTTGGCCTAAAACCACCACTATCCGCTCGAAGCCGCTTTCTACTTCTCCATCCTTCCAGTCGTGTAAGCGTGTAAAGTGTAAAGACAAACCGCGTTTTATTAAGACTCTCTCTGTTGCAAAGGAATCGTTCTGTTCGTGGGGCCGAAGCACAATAAAACTAACTGATAGTTGGCTAGATAAGCGAAACCGCACTTGTCGTCACACCCTTGATTACGGTGCGTTCAGTAAAAAAA              ]
[-] EMBL CNS091XT             [                                aagCGTTCCAGCAAACATGAGCGGTCCCGTAGCGGAATTTGTGAAGAGCGCTATCGCGAAGGATAAGGTGGTTATCTTCTCCAAGACCTACTGCCCTTACTGTACCATGGCAAAGGAGCCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGAGCTGGACAAGCGCAACGATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGTGCCCGCACGGTAAGTGGTCAACAATGACATCATTTGCACTGCTGATTATGGCCCGTCAGCCTTCATGAATCATGCCTTTATCTGATTTCAATGTCTCTCTCTCGCGTGTCTTCTCGTCTCCCAAAAACAGGTGCCGCGCGTGTTTATTGGCGGCAACTTTGTCGGTGGCGGTACCGACATCAAGAAGATGTACGACGACGGTCGGTTACAAAAAATGTTGGCCTAAAACCACCACTATCCGCTCGAAGCCGCTTTCTACTTCTCCATCCTTCCAGTCGTGTAAGCGTGTAAAGTGTAAAGACAAACCGCGTTTTATTAAGACTCTCTCTGTTGCAAAGGAATCGTTCTGTTCGTGGGGCCGAAGCACAATAAAACTAACTGATAGTTGGCTAGATAAGCGAAACCGCACTTGTCGTCACACCCTTGATTACGGTGCGTTCAGTAAAAAAAAAAAAAAAAAAGGT]




>consensus_5516#0
CCACTGGTTTTTTATGGGTTCATTGGTTAGCCGAACGTTCCGCAAACATGAGCGGTCCCG
TAGCGGAATTTGTGAAGAGCGCTATCGCGAAGGATAAGGTGGTTATCTTCTCCAAGACCT
ACTGCCCTTACTGTACCATGGCAAAGGAGCCCTTCAAGAAGCTGAACCAGGAGTACGCCT
GCTACGAGCTGGACAAGCGCAACGATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGA
CCGGTGCCCGCACGGTAAGTGGTCAACAATGACATCATTTGCACTGCTGATTATGGCCCG
TCAGCCTTCATGAATCATGCCTTTATCTGATTTCAATGTCTCTCTCTCGCGTGTCTTCTC
GTCTCCCAAAAACAGGTGCCGCGCGTGTTTATTGGCGGCAACTTTGTCGGTGGCGGTACC
GACATCAAGAAGATGTACGACGACGGTCGGTTACAAAAAATGTTGGCCTAAAACCACCAC
TATCCGCTCGAAGCCGCTTTCTACTTCTCCATCCTTCCAGTCGTGTAAGCGTGTAAAGTG
TAAAGACAAACCGCGTTTTATTAAGACTCTCTCTGTTGCAAAGGAATCGTTCTGTTCGTG
GGGCCGAAGCACAATAAAACTAACTGATAGTTGGCTAGATAAGCGAAACCGCACTTGTCG
TCACACCCTTGATTACGGTGCGTTCAGTAAAAAAAAAAAAAAAAAAGGT

consensusID : consensus_5516#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [GCAAGAATCGCCACGAGGTCTAAACGCAGCCGCAGTTCGTTTTACTGGGTTCATTATGGTTAGCCGAAGCGTCCAGNCAACATNAGCGGTCCGTANCGGAATTTGTGAAGAGNCGCTATCCGCGAAGGATAAGGTGGGTTATCTTCTCCAAGAACTACTGGCCTTACTGTACCATGGGGACAAGGAGGTGTGTGATATTCCGGTGTTTAATGTCGCCTTCNATAGNNCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGGAGCTGNGACAAGCTGTAACGATGTGTGACGAGATTCAGTCCGNACCTCGGCGAGCTTGACCGGTGCCCGCACNGGTGCCGCGCGTGTTTCATTTGGCGG]

[+] EMBL BX469156             [GCAAGAATCGCCACGAGGTCTAAACGCAGCCGCAGTTCGTTTTACTGGGTTCATTATGGTTAGCCGAAGCGTCCAGNCAACATNAGCGGTCCGTANCGGAATTTGTGAAGAGNCGCTATCCGCGAAGGATAAGGTGGGTTATCTTCTCCAAGAACTACTGGCCTTACTGTACCATGGGGACAAGGAGGTGTGTGATATTCCGGTGTTTAATGTCGCCTTCNATAGNNCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGGAGCTGNGACAAGCTGTAACGATGTGTGACGAGATTCAGTCCGNACCTCGGCGAGCTTGACCGGTGCCCGCACNGGTGCCGCGCGTGTTTCATTTGGCGG]




>consensus_5516#1
GCAAGAATCGCCACGAGGTCTAAACGCAGCCGCAGTTCGTTTTACTGGGTTCATTATGGT
TAGCCGAAGCGTCCAGNCAACATNAGCGGTCCGTANCGGAATTTGTGAAGAGNCGCTATC
CGCGAAGGATAAGGTGGGTTATCTTCTCCAAGAACTACTGGCCTTACTGTACCATGGGGA
CAAGGAGGTGTGTGATATTCCGGTGTTTAATGTCGCCTTCNATAGNNCCTTCAAGAAGCT
GAACCAGGAGTACGCCTGCTACGGAGCTGNGACAAGCTGTAACGATGTGTGACGAGATTC
AGTCCGNACCTCGGCGAGCTTGACCGGTGCCCGCACNGGTGCCGCGCGTGTTTCATTTGG
CGG

consensusID : consensus_5516#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 207
fasta sequence

                              [ATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGGGCCCGCACGGTGCCGCGCGTGTTCATTGGCGGCGATTTTGTCGGTGGCGGTACCGACATCAACAACATGTACGACGACGGTCGGTTACACAAAATGTTGGCCTATAACCACCACTATCCGCTCGAAGCCGCTTTCTACTCTTCCATTCTTCCAGCCGTGTAAGCGT]

[+] EMBL BM579277             [ATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGGGCCCGCACGGTGCCGCGCGTGTTCATTGGCGGCGATTTTGTCGGTGGCGGTACCGACATCAACAACATGTACGACGACGGTCGGTTACACAAAATGTTGGCCTATAACCACCACTATCCGCTCGAAGCCGCTTTCTACTCTTCCATTCTTCCAGCCGTGTAAGCGT]




>consensus_5516#2
ATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGACCGGGGCCCGCACGGTGCCGCGCG
TGTTCATTGGCGGCGATTTTGTCGGTGGCGGTACCGACATCAACAACATGTACGACGACG
GTCGGTTACACAAAATGTTGGCCTATAACCACCACTATCCGCTCGAAGCCGCTTTCTACT
CTTCCATTCTTCCAGCCGTGTAAGCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5516#0      CCACTGGTTTTTTATGGGTTCATTGGTTAGCCGAACGTTCCGCAAACATGAGCGGTCCCG 60
consensus_5516#2      ------------------------------------------------------------
consensus_5516#1      ------------------------------------------------------------
                                                                                  

consensus_5516#0      TAGCGGAATTTGTGAAGAGCGCTATCGCGAAGGATAAGGTGGTTATCTTCTCCAAGACCT 120
consensus_5516#2      ------------------------------------------------------------
consensus_5516#1      ------------------------------------------------------------
                                                                                  

consensus_5516#0      ACTGCCCTTACTGTACCATGGCAAAGGAGCCCTTCAAGAAGCTGAACCAGGAGTACGCCT 180
consensus_5516#2      ------------------------------------------------------------
consensus_5516#1      ------------------------------------------------------------
                                                                                  

consensus_5516#0      GCTACGAGCTGGACAAGCGCAACGATGGTGACGAGATTCAGTCCGTCCTCGGCGAGCTGA 240
consensus_5516#2      ------------------------------------------------------------
consensus_5516#1      ------------------------------------------------------------
                                                                                  

consensus_5516#0      CCGGTGCCCGCACGGTAAGTGGTCAACAATGACATCATTTGCACTGCTGATTATGGCCCG 300
consensus_5516#2      ------------------------------------------------------------
consensus_5516#1      ------------------------------------------------------------
                                                                                  

consensus_5516#0      TCAGCCTTCATGAATCATGCCTTTATCTGATTTCAATGTCTCTCTCTCGCGTGTCTTCTC 360
consensus_5516#2      -------------------ATGGTGACGAGATTCA--GTCCGTCCTCGGCGAG-CTGACC 38
consensus_5516#1      -------------GCAAGAATCGCCACGAGGTCTAA-ACGCAGCCGCAGTTCGTTTTACT 46
                                                *    *  *        *    *   *  *    

consensus_5516#0      GTCTCC--CAAAAACAGGTGCCGCGCGTGTTTATTGGCGGCAACTT-TGTCGGTGGCGGT 417
consensus_5516#2      GGGGCC--CGCA---CGGTGCCGCGCGTGTTCATTGGCGGCGATTT-TGTCGGTGGCGGT 92
consensus_5516#1      GGGTTCATTATGGTTAGCCGAAGCGTCCAGNCAACATNAGCGGTCCGTANCGGAATTTGT 106
                      *    *          *  *  ***       *      **      *  ***     **

consensus_5516#0      A-----CCGACATCAAGAAGATGTACGACGA-CGGTCGGTTACAAAAAATGTTGGCCTAA 471
consensus_5516#2      A-----CCGACATCAACAACATGTACGACGA-CGGTCGGTTACACAAAATGTTGGCCTAT 146
consensus_5516#1      GAAGAGNCGCTATCCGCGAAGGATAAGGTGGGTTATCTTCTCCAAGAACTACTGGCCTTA 166
                             **  ***    *    ** *  *     **   * **  ** *  ******  

consensus_5516#0      AACCACCACTATCCGCTCGAAGCCGCTTTCTACTT-----CTCCATCCTTCCAGTCGTGT 526
consensus_5516#2      AACCACCACTATCCGCTCGAAGCCGCTTTCTACTC-----TTCCATTCTTCCAGCCGTGT 201
consensus_5516#1      CTGTACCA-TGGGGACAAGGAGGTGTGTGATATTCCGGTGTTTAATGTCGCCTTCNATAG 225
                          **** *     *  * **  *  *  ** *       *  **    **     *  

consensus_5516#0      AAGCGTGTAAAGTGTAAAGACAAACCGCGTTTTATTAAGACTCTCTCTGTTGCAAAGGAA 586
consensus_5516#2      AAGCGT------------------------------------------------------ 207
consensus_5516#1      NNCCTTCAAGAAGCTGAACCAGGAGTACGCCTGCTACGGAGCTGNGACAAGCTGTAACGA 285
                         * *                                                      

consensus_5516#0      TCGTTCTGTTCGTGGGGCCGAAGCACAATAAAACTAACTGATAGTTGGCTAGATAAGCGA 646
consensus_5516#2      ------------------------------------------------------------
consensus_5516#1      TGTGTGACGAGATTCAGTCCGNACCTCGGCGAGCTTGACCGGTGCCCGCACNGGTGCCGC 345
                                                                                  

consensus_5516#0      AACCGCACTTGTCGTCACACCCTTGATTACGGTGCGTTCAGTAAAAAAAAAAAAAAAAAA 706
consensus_5516#2      ------------------------------------------------------------
consensus_5516#1      GCGTGTTTCATTTGGCGG------------------------------------------ 363
                                                                                  

consensus_5516#0      GGT 709
consensus_5516#2      ---
consensus_5516#1      ---