These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 661 fasta sequence [CCGCTGGTGTCCGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCTGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCAGTCGCAGTGGGACCGATTCATCGACTTCACCGGCGAAGATCCGGCCCACCTCTGGGTGGCCAGTACGACCATCTTCACGATGGCGGTATACT-GGGTGTTTGGTGGCATCTACA-CCCTGTTCGACGTGACCTGCCGGCCCGCCATCATCCGCCGGTACAAGATGCAGCCGGGCACGAACGAGCCGGTCGATCGGCGCCGGCTCGCGAAGGTGATCGCGACGGTGCTGCTGAACCAGACGGTCGTCGGCGTGCCGATGGCGTACTGCATGTACAGGGCGATGCGGTTC] [+] EMBL BM589002 [CCGCTGGTGTCTGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCTGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCAGTCGCAGTGGGACCGATTCATCGACTTCACCGGCGAAGATCCGGCCCACCTCTGGGTGGCCAGTACGACCATCTTCACGATGGCGGTATACTGGGGTGTTTGGTGGCATCTACACCCCTGTTCGACGTGACCTGCCGGCCCG ] [+] EMBL BM605673 [ CCGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCCGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCAGTCGCAGTGGGACCGATTCATCGACTTCACCGGCGAAGATCCGGCCCACCTCTGGGTGGCCAGTACGACCATCTTCACGATGGCGGTATACT GGGTGTTTGGTGGCATCTACA CCCTGTTCGACGTGACCTGCCGGCCCGCCATCATCCGCCGGTACAAGATGCAGCCGGGCACGAACGAGCCGGTCGATCGGCGCCGGCTCGCGAAGGTGATCGCGACGGTGCTGCTGA ] [+] EMBL BM595141 [ ccGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCTGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCAGTCGCAGTGGGACCGATTCATCGACTTCACCGGCGAAGATCCGGCCCACCTCTGGGTGGCCAGTACGACCATCTTCACGATGGCGGTATACT GGGTGTTTGGTGGCATCTACA CCCTGTTCGACGTGACCTGCCGGCCCGCCATCATCCGCCGGTACAAGATGCAGCCGGGCACGAACGAGCCGGTCGATCGGCGCCGGCTCGCGAAGGTGATCGCGACGGTGCTGCTGAACCAGACGGTCGTCGGCGTGCCGATGGCGTACTGCATGTACAGGGCGATGCGGTTC] consensusID : consensus_5519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CCGCGGACGCGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTCTCTCGCTCTTTCTCGCTGTCGGGTGCGATGTGCTACGGGCAAATTGCGTCGAATATCCTTACAGCCCGTCACAGCTAGCGCGACATTAGTTCGCATCTGGTGTCTGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCCGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCGGTCGCCTGGCTGTGGTTTAC] [+] EMBL BM579527 [CCGCGGACGCGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTCTCTCGCTCTTTCTCGCTGTCGGGTGCGATGTGCTACGGGCAAATTGCGTCGAATATCCTTACAGCCCGTCACAGCTAGCGCGACATTAGTTCGCATCTGGTGTCTGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCCGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCGGTCGCCTGGCTGTGGTTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5519#0 ------------------------------------------------------------ consensus_5519#1 CCGCGGACGCGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGT 60 consensus_5519#0 ------------------------------------------------------------ consensus_5519#1 CTCTCGCTCTTTCTCGCTGTCGGGTGCGATGTGCTACGGGCAAATTGCGTCGAATATCCT 120 consensus_5519#0 ----------------------------------CCGCTGGTGTCCGGTGTACTCACACA 26 consensus_5519#1 TACAGCCCGTCACAGCTAGCGCGACATTAGTTCGCATCTGGTGTCTGGTGTACTCACACA 180 * ******** ************** consensus_5519#0 TCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCC 86 consensus_5519#1 TCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCC 240 ************************************************************ consensus_5519#0 CATTGCCGGCTGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCC 146 consensus_5519#1 CATTGCCGGCCGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCC 300 ********** ************************************************* consensus_5519#0 CACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGG 206 consensus_5519#1 CACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGG 360 ************************************************************ consensus_5519#0 ACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGT 266 consensus_5519#1 ACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGT 420 ************************************************************ consensus_5519#0 ACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTC 326 consensus_5519#1 ACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTC 480 ************************************************************ consensus_5519#0 TGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCAGTCGCAGTGGG 386 consensus_5519#1 TGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCGGTCGCC-TGGC 539 ************************************************ ***** *** consensus_5519#0 ACCGATTCATCGACTTCACCGGCGAAGATCCGGCCCACCTCTGGGTGGCCAGTACGACCA 446 consensus_5519#1 TGTGGTTTAC-------------------------------------------------- 549 * ** * consensus_5519#0 TCTTCACGATGGCGGTATACTGGGTGTTTGGTGGCATCTACACCCTGTTCGACGTGACCT 506 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 GCCGGCCCGCCATCATCCGCCGGTACAAGATGCAGCCGGGCACGAACGAGCCGGTCGATC 566 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 GGCGCCGGCTCGCGAAGGTGATCGCGACGGTGCTGCTGAACCAGACGGTCGTCGGCGTGC 626 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 CGATGGCGTACTGCATGTACAGGGCGATGCGGTTC 661 consensus_5519#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||