cluster # 5525

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Anopheles gambiae
cluster # 5525 cluster # 5525 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5525#0 length = 655 sequences # 1

consensus_5525#1 length = 624 sequences # 3

consensusID : consensus_5525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCGCGGACGCGTGGGGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCAACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGTCGCCCTCGAGTTCGAGCTCGGTTCGAGGATTCGATTTAAGGGAAGCGAGCATCCTGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGCCAACTGCGCCAGCAGGTCCCTTGCGTACGGTGGAAGGAGGGGCCGCGTGTGCGTA]

[+] EMBL BM579778             [CCGCGGACGCGTGGGGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCAACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGTCGCCCTCGAGTTCGAGCTCGGTTCGAGGATTCGATTTAAGGGAAGCGAGCATCCTGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGCCAACTGCGCCAGCAGGTCCCTTGCGTACGGTGGAAGGAGGGGCCGCGTGTGCGTA]




>consensus_5525#0
CCGCGGACGCGTGGGGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCAT
ACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATC
ATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCAACA
CACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAAT
AATAGCCGCACCACCCAGAGCGCGCGTCGCCCTCGAGTTCGAGCTCGGTTCGAGGATTCG
ATTTAAGGGAAGCGAGCATCCTGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGA
TGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGT
AATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAG
GTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTG
TCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGC
CAACTGCGCCAGCAGGTCCCTTGCGTACGGTGGAAGGAGGGGCCGCGTGTGCGTA

consensusID : consensus_5525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 624
fasta sequence

                              [CCGCGCCATTTTGTGTTTCAGGGCGATGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCA--ACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCG-TCGC--CCTCGAGTTCGAGTTCGGTTCGAGGATTCGATTTAA-GGGAAGCGAGCATCCAGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGCCAACTGCGCCAG]

[+] EMBL BM644983             [CCGCGCCATTTTGTGTTTCAGGGCGATGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCA  ACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCG TCGC  CCTCGAGTTCGAGCTCGGTTCGAGGATTCGATTTAA GGGAAGCGAGCATCCTGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTG                                                                                                           ]
[+] EMBL BM614589             [   ccgCATTTTGTGTTTCAGGGCGATGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCA  ACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAACCGCACCACCCAGAGCGCGCG TCGC  CCTCGAGTTCGAGTTCGGTTGGAGGATTCGATTTAA GGGAAGCGAGCATCCAGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGCCAACTGCGCCAG]
[+] EMBL CNS08RAB             [                                                                                                                                     TCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCAACACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGCTCGCCACCTCGAGTTCGAGTTCGGTTCGAGGATTCGATTTAAGGGGAAGCGAGCATCCAGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGCCAACTG      ]




>consensus_5525#1
CCGCGCCATTTTGTGTTTCAGGGCGATGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCC
AAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTAC
CATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCA
CACGCCCCAACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTT
GTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGTCGCCCTCGAGTTCGAGTTCGG
TTCGAGGATTCGATTTAAGGGAAGCGAGCATCCAGCGAAAGGATATGTGTGCGCTCCAGT
ATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGA
TCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAA
GCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAAT
GTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTG
TCTAGAAACGGCCAACTGCGCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5525#0      ------------CCGCGGACGCGTGGGGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCC 48
consensus_5525#1      CCGCGCCATTTTGTGTTTCAGGGCGATGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCC 60
                                    *     * * *  *********************************

consensus_5525#0      AAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTAC 108
consensus_5525#1      AAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTAC 120
                      ************************************************************

consensus_5525#0      CATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCA 168
consensus_5525#1      CATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCA 180
                      ************************************************************

consensus_5525#0      CACGCCCCAACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTT 228
consensus_5525#1      CACGCCCCAACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTT 240
                      ************************************************************

consensus_5525#0      GTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGTCGCCCTCGAGTTCGAGCTCGG 288
consensus_5525#1      GTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGTCGCCCTCGAGTTCGAGTTCGG 300
                      ******************************************************* ****

consensus_5525#0      TTCGAGGATTCGATTTAAGGGAAGCGAGCATCCTGCGAAAGGATATGTGTGCGCTCCAGT 348
consensus_5525#1      TTCGAGGATTCGATTTAAGGGAAGCGAGCATCCAGCGAAAGGATATGTGTGCGCTCCAGT 360
                      ********************************* **************************

consensus_5525#0      ATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGA 408
consensus_5525#1      ATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGA 420
                      ************************************************************

consensus_5525#0      TCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAA 468
consensus_5525#1      TCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAA 480
                      ************************************************************

consensus_5525#0      GCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAAT 528
consensus_5525#1      GCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAAT 540
                      ************************************************************

consensus_5525#0      GTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTG 588
consensus_5525#1      GTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTG 600
                      ************************************************************

consensus_5525#0      TCTAGAAACGGCCAACTGCGCCAGCAGGTCCCTTGCGTACGGTGGAAGGAGGGGCCGCGT 648
consensus_5525#1      TCTAGAAACGGCCAACTGCGCCAG------------------------------------ 624
                      ************************                                    

consensus_5525#0      GTGCGTA 655
consensus_5525#1      -------