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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 553 cluster # 553       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_553#0 length = 481 sequences # 1  
consensus_553#1 length = 469 sequences # 1  

consensusID : consensus_553#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence
                              [CCGCACAACTTTGCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAGAAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTGGAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACGTCGGTCGTCGGCGCAATTGCTATTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAGCTGAAGAAAGAGGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCATGGTATGCAGTTTGCCGACTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCGGAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGATAAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAATAAGTATGTAGC]

[+] EMBL BM642696             [CCGCACAACTTTGCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAGAAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTGGAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACGTCGGTCGTCGGCGCAATTGCTATTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAGCTGAAGAAAGAGGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCATGGTATGCAGTTTGCCGACTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCGGAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGATAAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAATAAGTATGTAGC]


>consensus_553#0 CCGCACAACTTTGCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAG AAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTG GAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACGTCGGTCGTCGGCGCAATTGCTA TTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAGCT GAAGAAAGAGGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCA TGGTATGCAGTTTGCCGACTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCG GAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGAT AAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAATAAGTATGTAG C



consensusID : consensus_553#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence
                              [CCGCCCACGCGTCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAGAAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTGGAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACATCGGTCGTCGGCGCAATTGCTATTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAACTGAAGAAGGAAGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCATGGAATGCAGTTTGCCGATTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCGGAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGATAAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAAT]

[+] EMBL BM581093             [CCGCCCACGCGTCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAGAAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTGGAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACATCGGTCGTCGGCGCAATTGCTATTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAACTGAAGAAGGAAGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCATGGAATGCAGTTTGCCGATTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCGGAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGATAAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAAT]


>consensus_553#1 CCGCCCACGCGTCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAGA AACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTGG AGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACATCGGTCGTCGGCGCAATTGCTAT TCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAACTG AAGAAGGAAGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCAT GGAATGCAGTTTGCCGATTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCGG AAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGATA AGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_553#0      CCGCACAACTTTGCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAG 60
consensus_553#1      CCGCCCA-CGCGTCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAG 59
                     **** ** *    ***********************************************

consensus_553#0      AAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTG 120
consensus_553#1      AAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTG 119
                     ************************************************************

consensus_553#0      GAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACGTCGGTCGTCGGCGCAATTGCTA 180
consensus_553#1      GAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACATCGGTCGTCGGCGCAATTGCTA 179
                     ************************************* **********************

consensus_553#0      TTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAGCT 240
consensus_553#1      TTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAACT 239
                     ********************************************************* **

consensus_553#0      GAAGAAAGAGGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCA 300
consensus_553#1      GAAGAAGGAAGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCA 299
                     ****** ** **************************************************

consensus_553#0      TGGTATGCAGTTTGCCGACTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCG 360
consensus_553#1      TGGAATGCAGTTTGCCGATTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCG 359
                     *** ************** *****************************************

consensus_553#0      GAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGAT 420
consensus_553#1      GAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGAT 419
                     ************************************************************

consensus_553#0      AAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAATAAGTATGTAG 480
consensus_553#1      AAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAAT---------- 469
                     **************************************************          

consensus_553#0      C 481
consensus_553#1      -
                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)