These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1092 fasta sequence [TCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGAGCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGTCGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAATTTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGGAGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGTTGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGACGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCGGGATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGGGCGGTACGTACTCGCCCCGCTTCCTCTACATGTGGCCGAACAGTCGCATCTCGGTGATGGGCGGCTCGCAGGCGGCCGGTGTGCTGGNCCAAATCACCGAGGAGCAGTACCGCCGGACCGGGCGCGAATGGACNGANGAGATTGGCAATCGCATCAAGGCGCCGATCGTGCAGCAGTTCGAGGCGGANGGATCACCGTACTACAGTACCGCCCGGCTGTGGGACGATGGCATCATCGATCCGGTCGATACGCGCCGCGTGCTGGGGCTTAGCTTGCAGGCGGCCCTGAACCACCCGGTCGGCGAGACTCGCTTCGGTGTGTTCCGCATGTAGAGGAAGCAAAGAGATAGGCAGTGATCCACACAGCGAAAGCTTCAAATATTGGACGCGAAAACCAGGTGTTGCATTTATCTAGCTCGTAAGCGTGAGTAACAGTAACAGACTTGGCCAGCGATTGGCTACGAATAACGTACGAAATTTGTACCGACACACAGAAACGATACATTGCATCTAATGCATTCCATGCGTCTTCCAGTAGCGCAACAACAGAGTAGCACCAAGTGCGGGAAATGGTTTGATAAGAATATTATTTTGAAAAAATGTGCCTTTATCTGCCATA] [+] EMBL BX626351 [TCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGAGCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGTCGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAATTTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGGAGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGTTGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGACGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCGGGATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGGGCGGTACGTACTCGCCCCGCTTCCTCTACATGTGGCCGAACAGTCGCATCTCGGTGATGGGCGGCTCGCAGGCGGCCGGTGTGCTGGNCCAAATCACCGAGGAGCAGTACCGCCGGACCGGGCGCGAATGGACNGANGAGATTGGCAATCGCATCAAGGCGCCGATCGTGCAGCAGTTCGAGGCGGANGGATCACCGTACTACAGTACCGCCCGGCTGTGGGACGATGGCATCATCGAT ] [+] EMBL BM580219 [ ccgCACCGTACTACAGTACCGCCCGGCTGTGGGACGATGGCATCATCGATCCGGTCGATACGCGCCGCGTGCTGGGGCTTAGCTTGCAGGCGGCCCTGAACCACCCGGTCGGCGAGACTCGCTTCGGTGTGTTCCGCATGTAGAGGAAGCAAAGAGATAGGCAGTGATCCACACAGCGAAAGCTTCAAATATTGGACGCGAAAACCAGGTGTTGCATTTATCTAGCTCGTAAGCGTGAGTAACAGTAACAGACTTGGCCAGCGATTGGCTACGAATAACGTACGAAATTTGTACCGACACACAGAAACGATACATTGCATCTAATGCATTCCATGCGTCTTCCAGTAGCGCAACAACAGAGTAGCACCAAGTGCGGGAAATGGTTTGATAAGAATATTATTTTGAAAAAATGTGCCTTTATCTGCCATA] consensusID : consensus_5531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence [CCGCCCACGCGTCCGCACGTTTTTTGGCCAAACTCCATTGCCGTACAGACTCGCCTGTTCGCTGTTTCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGAGCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGTCGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAATTTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGGAGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGTTGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGACGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCGGCATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGGGCGGTACGTACTACCCGATCACGGTGAAGAAGCATCTGCGTGCGCAGGAGATCGCGCAGGAGAACAATCTGCCGTGCATCTATCTGGTC--GATTCCGGCGGTGCCAACTTGCCCCGCC--AGGCCGACGTGTTCCCGGACAAGATGCACTTTTTTGG] [+] EMBL BM587594 [CCGCCCACGCGTCCGCACGTTTTTTGGCCAAACTCCATTGCCGTACAGACTCGCCTGTTCGCTGTTTCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGAGCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGTCGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAATTTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGGAGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGTTGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGACGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCGGCATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGGGCGGTACGTACTACCCGATCACGGTGAAGAAGCATCTGCGTGCGCAGGAGATCGCGCAGGAGAACAATCTGCCGTGCATCTATCTGGTC GATTCCGGCGGTGCCAACTTGCCCCGCC AGGC ] [+] EMBL BM589059 [ ccgCGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGAGCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGTCGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAATTTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGGAGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGTTGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGACGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCGGCATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGGGCGGTACGTACTACCCGATCACGGTGAAGAAGCATCTGCGTGCGCAGGAGATCGCGCAGGAGAACAATCTGCCGTGCATCTATCTGGCCCAAATTCCGGCGGTGCCAACTTGCCCCGCCCAAGGCCGACGTGTTCCCGGACAAGATGCACTTTTTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5531#0 ------------------------------------------------------------ consensus_5531#1 CCGCCCACGCGTCCGCACGTTTTTTGGCCAAACTCCATTGCCGTACAGACTCGCCTGTTC 60 consensus_5531#0 ------TCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGA 54 consensus_5531#1 GCTGTTTCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGA 120 ****************************************************** consensus_5531#0 GCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGT 114 consensus_5531#1 GCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGT 180 ************************************************************ consensus_5531#0 CGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAAT 174 consensus_5531#1 CGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAAT 240 ************************************************************ consensus_5531#0 TTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGG 234 consensus_5531#1 TTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGG 300 ************************************************************ consensus_5531#0 AGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGT 294 consensus_5531#1 AGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGT 360 ************************************************************ consensus_5531#0 TGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGA 354 consensus_5531#1 TGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGA 420 ************************************************************ consensus_5531#0 CGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCG 414 consensus_5531#1 CGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCG 480 ************************************************************ consensus_5531#0 GGATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGG 474 consensus_5531#1 GCATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGG 540 * ********************************************************** consensus_5531#0 GCGGTACGTACTCGCCCCGCTTCCTCTA----CATGTGGCCGAACAGTCGCATCTCGGTG 530 consensus_5531#1 GCGGTACGTACTACCCGATCACGGTGAAGAAGCATCTGCGTGCGCAGGAG-ATCGCGCAG 599 ************ ** * * * *** ** * *** * *** ** * consensus_5531#0 ATGGGCGGCTCGCAGGCGGCCGGTGTGCTGGNCCAAATCACCGAGGAGCAGTACCGCCGG 590 consensus_5531#1 GAGAACAATCTGCCGTGCATCTATCTGGTCGATTCCGGCGGTGCCAACTTGCCCCGCCAG 659 * * ** * * * ** * * * * * * ***** * consensus_5531#0 ACCGGGCGCGAATGGACNGANGAGATTGGCAATCGCATCAAGGCGCCGATCGTGCAGCAG 650 consensus_5531#1 GCCG---ACGTGTTCCCGGACAAGAT--GCACTTTTTTGG-------------------- 694 *** ** * * ** **** *** * * consensus_5531#0 TTCGAGGCGGANGGATCACCGTACTACAGTACCGCCCGGCTGTGGGACGATGGCATCATC 710 consensus_5531#1 ------------------------------------------------------------ consensus_5531#0 GATCCGGTCGATACGCGCCGCGTGCTGGGGCTTAGCTTGCAGGCGGCCCTGAACCACCCG 770 consensus_5531#1 ------------------------------------------------------------ consensus_5531#0 GTCGGCGAGACTCGCTTCGGTGTGTTCCGCATGTAGAGGAAGCAAAGAGATAGGCAGTGA 830 consensus_5531#1 ------------------------------------------------------------ consensus_5531#0 TCCACACAGCGAAAGCTTCAAATATTGGACGCGAAAACCAGGTGTTGCATTTATCTAGCT 890 consensus_5531#1 ------------------------------------------------------------ consensus_5531#0 CGTAAGCGTGAGTAACAGTAACAGACTTGGCCAGCGATTGGCTACGAATAACGTACGAAA 950 consensus_5531#1 ------------------------------------------------------------ consensus_5531#0 TTTGTACCGACACACAGAAACGATACATTGCATCTAATGCATTCCATGCGTCTTCCAGTA 1010 consensus_5531#1 ------------------------------------------------------------ consensus_5531#0 GCGCAACAACAGAGTAGCACCAAGTGCGGGAAATGGTTTGATAAGAATATTATTTTGAAA 1070 consensus_5531#1 ------------------------------------------------------------ consensus_5531#0 AAATGTGCCTTTATCTGCCATA 1092 consensus_5531#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||