cluster # 5535

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Anopheles gambiae
cluster # 5535 cluster # 5535 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5535#0 length = 997 sequences # 1
consensus_5535#1 length = 546 sequences # 1

consensus_5535#2 length = 540 sequences # 1
consensus_5535#3 length = 198 sequences # 1

consensusID : consensus_5535#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 997
fasta sequence

                              [TAATGTCGGAAAAAGGTCTCTCGGCTTGCAGCACTACATAACAAAAACAACCCTTACAGAATCGGCCAACAGTCTGCCAAGATAACGGGCGTGATAACCAATCGAAAAAAGGATTATTGTGCGAGTGGAAACGCTGCCGTATGTGTGTGTGTGTAATCTTAACGAAGGGGTAGCTTAACCCAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATCGACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTTACATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCATATCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTCGTCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTGGCGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAAGAGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACACAAACACCCCCCACAGTACCAACATGGGACAGTCACTGTCGGAGCCGGAAACCTCCAAGCAGTCGGCATTTTGCCAGAACGACTACTACAAGGTCGGCTCGAGCTGCATGCAGGGCTGGCGGATGCACATGGAGGACTCGCACACGCACATACTCTCCCTGCCCGACGATCCCGGGACGTCCTTCTTTGCCGTGTACGACGGGCACGGGGGCGCCAAGGTGGCCGAGTACGCGGGCAAGCATCTGCACAAGTACGTAACCCGCCAGCCGTACGAGGAGCTGGTCAATCGGTGCAAGGAAGTGGTCTCTAAGCGACAGGAGCAGCGGAGGAAGCGCCGCAGCCATTCGAACCGATCGCACGAAGGGCCGGTAGGGGAGGAGGATTCGGGGCACAGCAGG]

[+] EMBL CNS08MBM             [TAATGTCGGAAAAAGGTCTCTCGGCTTGCAGCACTACATAACAAAAACAACCCTTACAGAATCGGCCAACAGTCTGCCAAGATAACGGGCGTGATAACCAATCGAAAAAAGGATTATTGTGCGAGTGGAAACGCTGCCGTATGTGTGTGTGTGTAATCTTAACGAAGGGGTAGCTTAACCCAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATCGACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTTACATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCATATCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTCGTCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTGGCGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAAGAGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACACAAACACCCCCCACAGTACCAACATGGGACAGTCACTGTCGGAGCCGGAAACCTCCAAGCAGTCGGCATTTTGCCAGAACGACTACTACAAGGTCGGCTCGAGCTGCATGCAGGGCTGGCGGATGCACATGGAGGACTCGCACACGCACATACTCTCCCTGCCCGACGATCCCGGGACGTCCTTCTTTGCCGTGTACGACGGGCACGGGGGCGCCAAGGTGGCCGAGTACGCGGGCAAGCATCTGCACAAGTACGTAACCCGCCAGCCGTACGAGGAGCTGGTCAATCGGTGCAAGGAAGTGGTCTCTAAGCGACAGGAGCAGCGGAGGAAGCGCCGCAGCCATTCGAACCGATCGCACGAAGGGCCGGTAGGGGAGGAGGATTCGGGGCACAGCAGG]




>consensus_5535#0
TAATGTCGGAAAAAGGTCTCTCGGCTTGCAGCACTACATAACAAAAACAACCCTTACAGA
ATCGGCCAACAGTCTGCCAAGATAACGGGCGTGATAACCAATCGAAAAAAGGATTATTGT
GCGAGTGGAAACGCTGCCGTATGTGTGTGTGTGTAATCTTAACGAAGGGGTAGCTTAACC
CAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATCG
ACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTTA
CATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCATA
TCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTCG
TCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTGG
CGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAAG
AGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACAC
AAACACCCCCCACAGTACCAACATGGGACAGTCACTGTCGGAGCCGGAAACCTCCAAGCA
GTCGGCATTTTGCCAGAACGACTACTACAAGGTCGGCTCGAGCTGCATGCAGGGCTGGCG
GATGCACATGGAGGACTCGCACACGCACATACTCTCCCTGCCCGACGATCCCGGGACGTC
CTTCTTTGCCGTGTACGACGGGCACGGGGGCGCCAAGGTGGCCGAGTACGCGGGCAAGCA
TCTGCACAAGTACGTAACCCGCCAGCCGTACGAGGAGCTGGTCAATCGGTGCAAGGAAGT
GGTCTCTAAGCGACAGGAGCAGCGGAGGAAGCGCCGCAGCCATTCGAACCGATCGCACGA
AGGGCCGGTAGGGGAGGAGGATTCGGGGCACAGCAGG

consensusID : consensus_5535#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [CCGCCCACGCGTCCGGAAAAAGAATCTTAACGAAGGGGTAGCTTAACCCAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATCGACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTTACATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCATATCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTCGTCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTGGCGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAAGAGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACACAAACACCCCCCACAGTACCAACATGGGGACAGTCACTGTCGGAGCCGGAAACCTCCCAGCAGTCGGCATTTTGCCAGA]

[+] EMBL BM580843             [CCGCCCACGCGTCCGGAAAAAGAATCTTAACGAAGGGGTAGCTTAACCCAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATCGACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTTACATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCATATCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTCGTCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTGGCGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAAGAGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACACAAACACCCCCCACAGTACCAACATGGGGACAGTCACTGTCGGAGCCGGAAACCTCCCAGCAGTCGGCATTTTGCCAGA]




>consensus_5535#1
CCGCCCACGCGTCCGGAAAAAGAATCTTAACGAAGGGGTAGCTTAACCCAACACAACTGC
AGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATCGACATCGTCACGG
TCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTTACATTAGCACAAC
CCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCATATCTCTGATTTGG
AATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTCGTCTACCTGTCCA
AAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTGGCGGTTTTCCCCG
TACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAAGAGTGTAGGAGAG
CTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACACAAACACCCCCCA
CAGTACCAACATGGGGACAGTCACTGTCGGAGCCGGAAACCTCCCAGCAGTCGGCATTTT
GCCAGA

consensusID : consensus_5535#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [CCGCAGAGTGAAAAAAAACACTTCCCTCAACGATCTACGAAGAATCTTAACGAAGGGGTAGCTTAACCCAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATCGACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTTACATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCATATCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTCGTCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTGGCGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAAGAGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACACAAACACCCCCCACAGTACCAACATGGGACAGTCACTGTCGGAGCCGGAAACC]

[+] EMBL BM593761             [CCGCAGAGTGAAAAAAAACACTTCCCTCAACGATCTACGAAGAATCTTAACGAAGGGGTAGCTTAACCCAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATCGACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTTACATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCATATCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTCGTCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTGGCGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAAGAGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACACAAACACCCCCCACAGTACCAACATGGGACAGTCACTGTCGGAGCCGGAAACC]




>consensus_5535#2
CCGCAGAGTGAAAAAAAACACTTCCCTCAACGATCTACGAAGAATCTTAACGAAGGGGTA
GCTTAACCCAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTAC
TACCATCGACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCA
CGTGTTTACATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCA
GGATCATATCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGT
CGTCGTCGTCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCA
ATCTGTGGCGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTG
TGCACAAGAGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGAC
AACCACACAAACACCCCCCACAGTACCAACATGGGACAGTCACTGTCGGAGCCGGAAACC

consensusID : consensus_5535#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence

                              [TGCAAAGAAAATAAAATTACAACACTTAACTAACGCAACATTTTGTTTTCCAATGTTTGTTTCAGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACACAAACACCCCCCACAGTACCAACATGGGACAGTCACTGTCGGAGCCGGAAACCTCCAAGCAGTCGGCATTTTGCCAGAACGACTACTACAAGG]

[+] EMBL BM612109             [TGCAAAGAAAATAAAATTACAACACTTAACTAACGCAACATTTTGTTTTCCAATGTTTGTTTCAGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACACAAACACCCCCCACAGTACCAACATGGGACAGTCACTGTCGGAGCCGGAAACCTCCAAGCAGTCGGCATTTTGCCAGAACGACTACTACAAGG]




>consensus_5535#3
TGCAAAGAAAATAAAATTACAACACTTAACTAACGCAACATTTTGTTTTCCAATGTTTGT
TTCAGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACACAAACACCCCCCACA
GTACCAACATGGGACAGTCACTGTCGGAGCCGGAAACCTCCAAGCAGTCGGCATTTTGCC
AGAACGACTACTACAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5535#1      ------------------------------------------------------------
consensus_5535#2      ------------------------------------------------------------
consensus_5535#0      TAATGTCGGAAAAAGGTCTCTCGGCTTGCAGCACTACATAACAAAAACAACCCTTACAGA 60
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      ------------------------------------------------------------
consensus_5535#2      -----------------------------------------------------CCGCAGA 7
consensus_5535#0      ATCGGCCAACAGTCTGCCAAGATAACGGGCGTGATAACCAATCGAAAAAAGGATTATTGT 120
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      -------------CCGCCCACGCGTCCGGAAAAAGAATCTTAACGAAGGGGTAGCTTAAC 47
consensus_5535#2      GTGAAAAAAAACACTTCCCTCAACGATCTACGAAGAATCTTAACGAAGGGGTAGCTTAAC 67
consensus_5535#0      GCGAGTGGAAACGCTGCCGT-ATGTGTGTGTGTGTAATCTTAACGAAGGGGTAGCTTAAC 179
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      CCAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATC 107
consensus_5535#2      CCAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATC 127
consensus_5535#0      CCAACACAACTGCAGTGCACTACATCATCGGCAACAACTCTAGTTTGAACTACTACCATC 239
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      GACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTT 167
consensus_5535#2      GACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTT 187
consensus_5535#0      GACATCGTCACGGTCAATCTTCATCATCGGCGGACATAATCGTACGTGCATCACGTGTTT 299
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      ACATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCAT 227
consensus_5535#2      ACATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCAT 247
consensus_5535#0      ACATTAGCACAACCCAGACAAGAGAGAGAGAAAAAAAAACAACCCTTGAAGCAGGATCAT 359
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      ATCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTC 287
consensus_5535#2      ATCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTC 307
consensus_5535#0      ATCTCTGATTTGGAATGCAACGAACTCACATACGTTGATGATTGATTATCTGTCGTCGTC 419
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      GTCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTG 347
consensus_5535#2      GTCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTG 367
consensus_5535#0      GTCTACCTGTCCAAAGCCTTTAGTCTGACAAAGAAACTTGCAGCCACGCAGCAATCTGTG 479
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      GCGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAA 407
consensus_5535#2      GCGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAA 427
consensus_5535#0      GCGGTTTTCCCCGTACGCCGTTGTCGCCATCGGTTGACCCCGTGTACAAATTGTGCACAA 539
consensus_5535#3      -------TGCAAAGAAAATAAAATTAC-AACACTTAACTAACGCAACATTTTGTTTTCCA 52
                             * *    *        *  * * *  ** **       ***  ****   * *

consensus_5535#1      GAGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACA 467
consensus_5535#2      GAGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACA 487
consensus_5535#0      GAGTGTAGGAGAGCTTTTTGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACA 599
consensus_5535#3      ATGTTTG-------TTTCAGGCGTTGAAAAGGAATATTTAACTCAAGTTTGACAACCACA 105
                        ** *        ***  *****************************************

consensus_5535#1      CAAACACCCCCCACAGTACCAACATGGGGACAGTCACTGTCGGAGCCGGAAACCTCCCAG 527
consensus_5535#2      CAAACACCCCCCACAGTACCAACATGGG-ACAGTCACTGTCGGAGCCGGAAACC------ 540
consensus_5535#0      CAAACACCCCCCACAGTACCAACATGGG-ACAGTCACTGTCGGAGCCGGAAACCTCCAAG 658
consensus_5535#3      CAAACACCCCCCACAGTACCAACATGGG-ACAGTCACTGTCGGAGCCGGAAACCTCCAAG 164
                      **************************** *************************      

consensus_5535#1      CAGTCGGCATTTTGCCAGA----------------------------------------- 546
consensus_5535#2      ------------------------------------------------------------
consensus_5535#0      CAGTCGGCATTTTGCCAGAACGACTACTACAAGGTCGGCTCGAGCTGCATGCAGGGCTGG 718
consensus_5535#3      CAGTCGGCATTTTGCCAGAACGACTACTACAAGG-------------------------- 198
                                                                                  

consensus_5535#1      ------------------------------------------------------------
consensus_5535#2      ------------------------------------------------------------
consensus_5535#0      CGGATGCACATGGAGGACTCGCACACGCACATACTCTCCCTGCCCGACGATCCCGGGACG 778
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      ------------------------------------------------------------
consensus_5535#2      ------------------------------------------------------------
consensus_5535#0      TCCTTCTTTGCCGTGTACGACGGGCACGGGGGCGCCAAGGTGGCCGAGTACGCGGGCAAG 838
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      ------------------------------------------------------------
consensus_5535#2      ------------------------------------------------------------
consensus_5535#0      CATCTGCACAAGTACGTAACCCGCCAGCCGTACGAGGAGCTGGTCAATCGGTGCAAGGAA 898
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      ------------------------------------------------------------
consensus_5535#2      ------------------------------------------------------------
consensus_5535#0      GTGGTCTCTAAGCGACAGGAGCAGCGGAGGAAGCGCCGCAGCCATTCGAACCGATCGCAC 958
consensus_5535#3      ------------------------------------------------------------
                                                                                  

consensus_5535#1      ---------------------------------------
consensus_5535#2      ---------------------------------------
consensus_5535#0      GAAGGGCCGGTAGGGGAGGAGGATTCGGGGCACAGCAGG 997
consensus_5535#3      ---------------------------------------