cluster # 5536

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Anopheles gambiae
cluster # 5536 cluster # 5536 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5536#0 length = 838 sequences # 1
consensus_5536#1 length = 596 sequences # 1

consensus_5536#2 length = 526 sequences # 1
consensus_5536#3 length = 167 sequences # 1

consensusID : consensus_5536#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 838
fasta sequence

                              [GCAAGAATCGGCCGAGGATGTAAGCGCGCACGCACGCACGTGTGCTATCGCGTATCTTAAGAACGATGAACTGATATTGTGTAACTTTTTAGCGAGGAAGGAAAAAAACAAAACAAACAAAATCATACTGTATCGAACTGGGCGAATGCCGGTGTGTCGGTGTGTGTGTGTATGTGTGTGCATGTACGTGTGTTAGCAGATAAACCAAGACCAGCAAGGGCACAGGGCTTCTCGCGCACGTGTTTGCACATTGCGCAAAAGAATATTGTATGTGGTGCGCGTTTGTTAAGCGTATGTGTATGGGTGTGTCCTATGTTTCCTAGGGAAAGCGAAAAGGATATCTGCAGTTAACGGAGGGNAGGCTTGTAGGTTATGGTTGTCGTATGGTTAAGGCCCAACGTNAAAGGTTAAGTGTGTTATTAACTTGAAAGGCACTAATACAGGGAAACCCAGAAAACTGGTTAACCAAGGAACACATAAGGTTTCATCATTAACCACATNCACGTCCTCATTCGTCCTCTTCCGTTCCATTGGACTAAAATTGTCACGTTAAACACGGGCGGATTGGGCCNCCNCACAGTTATGCCCTNAAGCTAGATCGTCGACGGGTNNNGCTTGTCACACGCCAAAAGAACTTTAAGGGTNGGCCAAAACNCNACACAAAAACCAGCGTTTTAANGGAAAAAAACACATTTGTCCAAAGAANCAACCTTTAGACTCACCAATTAAAGATTTGGCGAAACCCAGAAAAAAGCACAANAAACATTATCCAGTTTCCCCCAAAAATCCCAANGCACTTTCACAAAGTNGGCTTNTANGAGAACGGACGCACTGATAT]

[+] EMBL BX468565             [GCAAGAATCGGCCGAGGATGTAAGCGCGCACGCACGCACGTGTGCTATCGCGTATCTTAAGAACGATGAACTGATATTGTGTAACTTTTTAGCGAGGAAGGAAAAAAACAAAACAAACAAAATCATACTGTATCGAACTGGGCGAATGCCGGTGTGTCGGTGTGTGTGTGTATGTGTGTGCATGTACGTGTGTTAGCAGATAAACCAAGACCAGCAAGGGCACAGGGCTTCTCGCGCACGTGTTTGCACATTGCGCAAAAGAATATTGTATGTGGTGCGCGTTTGTTAAGCGTATGTGTATGGGTGTGTCCTATGTTTCCTAGGGAAAGCGAAAAGGATATCTGCAGTTAACGGAGGGNAGGCTTGTAGGTTATGGTTGTCGTATGGTTAAGGCCCAACGTNAAAGGTTAAGTGTGTTATTAACTTGAAAGGCACTAATACAGGGAAACCCAGAAAACTGGTTAACCAAGGAACACATAAGGTTTCATCATTAACCACATNCACGTCCTCATTCGTCCTCTTCCGTTCCATTGGACTAAAATTGTCACGTTAAACACGGGCGGATTGGGCCNCCNCACAGTTATGCCCTNAAGCTAGATCGTCGACGGGTNNNGCTTGTCACACGCCAAAAGAACTTTAAGGGTNGGCCAAAACNCNACACAAAAACCAGCGTTTTAANGGAAAAAAACACATTTGTCCAAAGAANCAACCTTTAGACTCACCAATTAAAGATTTGGCGAAACCCAGAAAAAAGCACAANAAACATTATCCAGTTTCCCCCAAAAATCCCAANGCACTTTCACAAAGTNGGCTTNTANGAGAACGGACGCACTGATAT]




>consensus_5536#0
GCAAGAATCGGCCGAGGATGTAAGCGCGCACGCACGCACGTGTGCTATCGCGTATCTTAA
GAACGATGAACTGATATTGTGTAACTTTTTAGCGAGGAAGGAAAAAAACAAAACAAACAA
AATCATACTGTATCGAACTGGGCGAATGCCGGTGTGTCGGTGTGTGTGTGTATGTGTGTG
CATGTACGTGTGTTAGCAGATAAACCAAGACCAGCAAGGGCACAGGGCTTCTCGCGCACG
TGTTTGCACATTGCGCAAAAGAATATTGTATGTGGTGCGCGTTTGTTAAGCGTATGTGTA
TGGGTGTGTCCTATGTTTCCTAGGGAAAGCGAAAAGGATATCTGCAGTTAACGGAGGGNA
GGCTTGTAGGTTATGGTTGTCGTATGGTTAAGGCCCAACGTNAAAGGTTAAGTGTGTTAT
TAACTTGAAAGGCACTAATACAGGGAAACCCAGAAAACTGGTTAACCAAGGAACACATAA
GGTTTCATCATTAACCACATNCACGTCCTCATTCGTCCTCTTCCGTTCCATTGGACTAAA
ATTGTCACGTTAAACACGGGCGGATTGGGCCNCCNCACAGTTATGCCCTNAAGCTAGATC
GTCGACGGGTNNNGCTTGTCACACGCCAAAAGAACTTTAAGGGTNGGCCAAAACNCNACA
CAAAAACCAGCGTTTTAANGGAAAAAAACACATTTGTCCAAAGAANCAACCTTTAGACTC
ACCAATTAAAGATTTGGCGAAACCCAGAAAAAAGCACAANAAACATTATCCAGTTTCCCC
CAAAAATCCCAANGCACTTTCACAAAGTNGGCTTNTANGAGAACGGACGCACTGATAT

consensusID : consensus_5536#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence

                              [GTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACATTCAAACGTACTGTAGTAGTGCATGTACGTGTGTTAGCAGATAAACCAACACCAGCAAGGGCACAGGGCTTCTCGCGCACGTGTTTGCACATTGCGCAAAAAATATTGTTTGTGGTGCGCGTTTTTAAGCGTATGTGTATGGGTGTGTCCTATGTTTCCTAGGAAACGAAAAGGATATCTGCATTAACGGAGGGGGGTTGTTGTTATGGTTGTTGTTGGTTAAGCCCAAGTTTAAGTAATTGTTATAATGAAGCATATAAGGAACCAGAAATGTAACAGAAATAGTTTATTTTTTTTCTCTCTCTCTCTCTCTGTATTATAAGGTGCCCCTTCTATTTTGTTTTAACAAATTAGTGCAACAAAAACCCTAGAAATCAAACTAAAATAGTGGACAAACCAACTTCTCCAACAGCTAAGGTTTAGAGGCGTGNTGTGTGTTTGTTGAATGCGTGAAAGGGAATGTTTGAATGAGCAACGCAGAAAGATATCGTGCGTGTGTGCGTGTGCGCGTGTGTGTGNGTTAAGAATTCTGNTCCTAAAACAA]

[+] EMBL BX621085             [GTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACATTCAAACGTACTGTAGTAGTGCATGTACGTGTGTTAGCAGATAAACCAACACCAGCAAGGGCACAGGGCTTCTCGCGCACGTGTTTGCACATTGCGCAAAAAATATTGTTTGTGGTGCGCGTTTTTAAGCGTATGTGTATGGGTGTGTCCTATGTTTCCTAGGAAACGAAAAGGATATCTGCATTAACGGAGGGGGGTTGTTGTTATGGTTGTTGTTGGTTAAGCCCAAGTTTAAGTAATTGTTATAATGAAGCATATAAGGAACCAGAAATGTAACAGAAATAGTTTATTTTTTTTCTCTCTCTCTCTCTCTGTATTATAAGGTGCCCCTTCTATTTTGTTTTAACAAATTAGTGCAACAAAAACCCTAGAAATCAAACTAAAATAGTGGACAAACCAACTTCTCCAACAGCTAAGGTTTAGAGGCGTGNTGTGTGTTTGTTGAATGCGTGAAAGGGAATGTTTGAATGAGCAACGCAGAAAGATATCGTGCGTGTGTGCGTGTGCGCGTGTGTGTGNGTTAAGAATTCTGNTCCTAAAACAA]




>consensus_5536#1
GTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACATTCAAACG
TACTGTAGTAGTGCATGTACGTGTGTTAGCAGATAAACCAACACCAGCAAGGGCACAGGG
CTTCTCGCGCACGTGTTTGCACATTGCGCAAAAAATATTGTTTGTGGTGCGCGTTTTTAA
GCGTATGTGTATGGGTGTGTCCTATGTTTCCTAGGAAACGAAAAGGATATCTGCATTAAC
GGAGGGGGGTTGTTGTTATGGTTGTTGTTGGTTAAGCCCAAGTTTAAGTAATTGTTATAA
TGAAGCATATAAGGAACCAGAAATGTAACAGAAATAGTTTATTTTTTTTCTCTCTCTCTC
TCTCTGTATTATAAGGTGCCCCTTCTATTTTGTTTTAACAAATTAGTGCAACAAAAACCC
TAGAAATCAAACTAAAATAGTGGACAAACCAACTTCTCCAACAGCTAAGGTTTAGAGGCG
TGNTGTGTGTTTGTTGAATGCGTGAAAGGGAATGTTTGAATGAGCAACGCAGAAAGATAT
CGTGCGTGTGTGCGTGTGCGCGTGTGTGTGNGTTAAGAATTCTGNTCCTAAAACAA

consensusID : consensus_5536#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [CTCTGCGTGTATGTGCGTGTGCTGTGTGTCCCACATGTAAAGTGTTTTTTTTTAAAGTAACAAACTAGAAACAAACATACCAATTTGAAGACAAAGTTAAAGAGACAAACACCACCGCAAACGAAAGGAGGATTGTTTGGTTTTGTTTTCAATTATCTTTCCCTCCAACACACACACACACACACACACACACACACACCGTTGTACGTGAACTGTTTGCAGCCTGTTTTCTTTCCATTCGTTTAATTTTTTTATATATGATAAATATTATTTTTTCGATTTTGTTTCATAAAACACCATTTACTTTAATTATCGATCTATGAATAATGCTAGCTTGTTCTGTTCTTTTTTAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGCGTGTGTTANCAGATAAAACAACACCCGCAAGGGCACAGGGCTTCTCGCGCACGTGTTTGCTCATTGCGCAAAAAATATTGTTTGTGGTGCGCGTTTTTAAGCGTATGTGTGTGCGTGTGTCCT]

[+] EMBL BX620193             [CTCTGCGTGTATGTGCGTGTGCTGTGTGTCCCACATGTAAAGTGTTTTTTTTTAAAGTAACAAACTAGAAACAAACATACCAATTTGAAGACAAAGTTAAAGAGACAAACACCACCGCAAACGAAAGGAGGATTGTTTGGTTTTGTTTTCAATTATCTTTCCCTCCAACACACACACACACACACACACACACACACACCGTTGTACGTGAACTGTTTGCAGCCTGTTTTCTTTCCATTCGTTTAATTTTTTTATATATGATAAATATTATTTTTTCGATTTTGTTTCATAAAACACCATTTACTTTAATTATCGATCTATGAATAATGCTAGCTTGTTCTGTTCTTTTTTAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGCGTGTGTTANCAGATAAAACAACACCCGCAAGGGCACAGGGCTTCTCGCGCACGTGTTTGCTCATTGCGCAAAAAATATTGTTTGTGGTGCGCGTTTTTAAGCGTATGTGTGTGCGTGTGTCCT]




>consensus_5536#2
CTCTGCGTGTATGTGCGTGTGCTGTGTGTCCCACATGTAAAGTGTTTTTTTTTAAAGTAA
CAAACTAGAAACAAACATACCAATTTGAAGACAAAGTTAAAGAGACAAACACCACCGCAA
ACGAAAGGAGGATTGTTTGGTTTTGTTTTCAATTATCTTTCCCTCCAACACACACACACA
CACACACACACACACACACCGTTGTACGTGAACTGTTTGCAGCCTGTTTTCTTTCCATTC
GTTTAATTTTTTTATATATGATAAATATTATTTTTTCGATTTTGTTTCATAAAACACCAT
TTACTTTAATTATCGATCTATGAATAATGCTAGCTTGTTCTGTTCTTTTTTAATTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGCGTGTGTTANCAGATAAA
ACAACACCCGCAAGGGCACAGGGCTTCTCGCGCACGTGTTTGCTCATTGCGCAAAAAATA
TTGTTTGTGGTGCGCGTTTTTAAGCGTATGTGTGTGCGTGTGTCCT

consensusID : consensus_5536#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence

                              [TCGATGTGTAGGAAAACACAGTAAAGCTGTTTCGCTTTTTTTTTTTTGAAAATTATCTCTGCGTGTATGTGCGTGTGCTGTGTGTCCCACATGTAAAGTGTTTTTTTTTAAAGTAACAAACTAGAAACAAAAAAAAACACTTTACATGTGGGACACACAACACTGAA]

[+] EMBL BX612002             [TCGATGTGTAGGAAAACACAGTAAAGCTGTTTCGCTTTTTTTTTTTTGAAAATTATCTCTGCGTGTATGTGCGTGTGCTGTGTGTCCCACATGTAAAGTGTTTTTTTTTAAAGTAACAAACTAGAAACAAAAAAAAACACTTTACATGTGGGACACACAACACTGAA]




>consensus_5536#3
TCGATGTGTAGGAAAACACAGTAAAGCTGTTTCGCTTTTTTTTTTTTGAAAATTATCTCT
GCGTGTATGTGCGTGTGCTGTGTGTCCCACATGTAAAGTGTTTTTTTTTAAAGTAACAAA
CTAGAAACAAAAAAAAACACTTTACATGTGGGACACACAACACTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5536#2      ------------------------------------------------------------
consensus_5536#3      ------------------------------------------------------------
consensus_5536#0      GCAAGAATCGGCCGAGGATGTAAGCGCGCACGCACGCACGTGTGCTATCGCGTATCTTAA 60
consensus_5536#1      ------------------------------------------------------------
                                                                                  

consensus_5536#2      ------------------------------------------------------------
consensus_5536#3      ------------------------------------------------------------
consensus_5536#0      GAACGATGAACTGATATTGTGTAACTTTTTAGCGAGGAAGGAAAAAAACAAAACAAACAA 120
consensus_5536#1      -------------------------------------------------GTGCGCGCCAA 11
                                                                                  

consensus_5536#2      ------------------------------------------------------------
consensus_5536#3      ------------------------------------------------------------
consensus_5536#0      AATCATACTGTATCGAACTGGGCGAATGCCGGTGTGTCGGTGTGTGTGTGTA-TGTGT-- 177
consensus_5536#1      TATTATGCTAGGA-GAAGAAAGCACTTACACACACACACACATTCAAACGTACTGTAGTA 70
                                                                                  

consensus_5536#2      --------------------------------------------------------CTCT 4
consensus_5536#3      ------------------------------------------------------------
consensus_5536#0      GTGCATGTACGTGTGTTAGCAGATAAACCAAGACCAGCAAGGGCACAGGGCTTCTCGCGC 237
consensus_5536#1      GTGCATGTACGTGTGTTAGCAGATAAACCAACACCAGCAAGGGCACAGGGCTTCTCGCGC 130
                                                                                  

consensus_5536#2      GCGTGTATGTGCGTGTGCTGTGTGTCCCACATGTAAAGTGTTTTTTTTTAAAGTAACAAA 64
consensus_5536#3      ------------------------------------------------------------
consensus_5536#0      ACGTGTTTGCACATTGCGCAAAAGAATATTGTATGTGGTGCGCGTTTGTTAAGCGTATGT 297
consensus_5536#1      ACGTGTTTGCACATTGCGCAAAA-AATATTGTTTGTGGTGCGCGTTT-TTAAGCGTATGT 188
                                                                                  

consensus_5536#2      CTAGAAACAAACATACCAATTTGAAGACAAAGTTAAAGAGACAAACACC-ACCGCAAACG 123
consensus_5536#3      ------------------------------------------------------------
consensus_5536#0      GTATGGGTGTGTCCTATGTTTCCTAGGGAAAGCGAAAAGGATATCTGCAGTTAACGGAGG 357
consensus_5536#1      GTATGGGTGTGTCCTATGTTTCCTAGGAAA--CGAAAAGGATATCTGCA-TTAACGGAGG 245
                                                                                  

consensus_5536#2      AAAGGAGGATTGTTTGGTTTTGTTTTCAATTATCTTTCCCTCCAACACACACACACACAC 183
consensus_5536#3      ------------------------------------------------------------
consensus_5536#0      GNAGGCTTGTAGGTTATGGTTGTCGTATGGTTAAGGCCCAACGTNAAAGGTTAAGTGTGT 417
consensus_5536#1      GGGG--TTGTTG-TTATGGTTGTTGT-TGGTTAAGCCC--------AAGTTTAAGTA-AT 292
                                                                                  

consensus_5536#2      ACACACACACACACACCGTTGTACGTGAACTGTTTGCAGCCTGTTTTCTTTCCATTCGTT 243
consensus_5536#3      ------------------------------------------------------------
consensus_5536#0      TATTAACTTGAAAGGCACTAATACAGGGAAACCCAGAAAACTGGTTAACCAAGGAACACA 477
consensus_5536#1      TGTTATAATGAAGC------ATATAAGGAA--CCAGAAA--TG--TAAC--AGAAATAGT 338
                                                                                  

consensus_5536#2      TAATTTTTTTATATATGATAAATATTATTTTTTCGATTTTGTTTCATAAAACACCATTTA 303
consensus_5536#3      ------------------------------------------------------------
consensus_5536#0      TAAGGTTTCATCATTAACCACAT-NCACGTCCTCATTCGT-CCTCTTCCGTTCCATTGGA 535
consensus_5536#1      TTATTTTTTTTCTCTCTCTCTCT-CTCTGTATTATAAGGTGCCCCTTCTATTTTGTTTTA 397
                                                                                  

consensus_5536#2      CTTTAATTAT--CGATCTATG-AATAATGCTAGCTTGTTCT---GTTCTTTTTTAATTGT 357
consensus_5536#3      -TCGATGTGT--AGGAAAACACAGTAAAGCTGTTTCGCTTT---TTTTTTTTTGAAAATT 54
consensus_5536#0      CTAAAATTGTCACGTTAAACACGGGCGGATTGGGCCNCCNCACAGTTATGCCCTNAAGCT 595
consensus_5536#1      ACAAA-TTAGTGCAACAAAAACCCTAGAA----ATCAAACTAAAATAGTGGAC-AAACCA 451
                          *  *          *                          *  *      *    

consensus_5536#2      GTGTGTGTGTGTGTGTGTGTGTGT-GTGTGTGTGTGTGTGCATGTGCGTGTGTTANCAGA 416
consensus_5536#3      ATCTCTGCGTGTATGTGCGTGTGC--TGTGTGTCC---CACATGTAAA-GTGTTTTTTTT 108
consensus_5536#0      AGATCGTCGACGGGTNNNGCTTGTCACACGCCAAAAGAACTTTAAGGGTNGGCCAAAACN 655
consensus_5536#1      ACTTCTCCAACAGCTAAGGTTTAG-AGGCGTGNTGTGTGTTTGTTGAATGCGT-GAAAGG 509
                         *              *  *       *                     *        

consensus_5536#2      TAAAACAAC--ACCCGCAAGGGCACAGGGCTTCTCGCGCACGTGTTTGCTCATTGCGCAA 474
consensus_5536#3      TAAAGTAACAAACTAGAAACAAAAAAAAACACTTTACATGTGGG---ACACACAACACTG 165
consensus_5536#0      CNACACAAAA-ACCAGCGTTTTAANGGAAAAAAACACATTTGTCCAAAGAANCAACCTTT 714
consensus_5536#1      GAATGTTTGA-ATGAGCAACGCAGAAAGATATCGTGCGTGTGTGCGTGTGCGCGTGTGTG 568
                        *        *   *                    *    *                  

consensus_5536#2      AAAATATTGTTTGTGGTGCGCGTTTTTAAGCGTATGTGTGTGCGTGTGTCCT-------- 526
consensus_5536#3      AA---------------------------------------------------------- 167
consensus_5536#0      AGACTCACCAATTAAAGATTTGGCGAAACCCAGAAAAAAGCACAANAAACATTATCCAGT 774
consensus_5536#1      TGNGTTAAGAATTCTGNTCCTAAAACAA-------------------------------- 596
                                                                                  

consensus_5536#2      ------------------------------------------------------------
consensus_5536#3      ------------------------------------------------------------
consensus_5536#0      TTCCCCCAAAAATCCCAANGCACTTTCACAAAGTNGGCTTNTANGAGAACGGACGCACTG 834
consensus_5536#1      ------------------------------------------------------------
                                                                                  

consensus_5536#2      ----
consensus_5536#3      ----
consensus_5536#0      ATAT 838
consensus_5536#1      ----