These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 651 fasta sequence [CCGCCGCTTTCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTCGAACGATGATAGATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCGAAGGATGCAATCGTCCCTGGAAAACAGGCGTACATCTCTGGCTTTGGAGACACAGAGGAAAACAATGCTGAAGTAGTGTTAAAGGCCGCCCACTGTCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCCTGATGTGATGCGCGAGTTTATGCTGTGTGCCGGGATTTTGGCTGGTGGGGTGGACTCGTGCCAG] [+] EMBL BM625576 [ CCGCTTTCGTTGAAGTAACATGGGCGTACTAAGGCAAGCCGGCCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTATGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTCGAACGATGATAGATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCGAAGGATGCAATCGTCCCTGGAAAACAGGCGTACATCTCTGGCTTTGGAGACACAGAGGAAAACAATGCTGAAGTAGTGTTAAAGGCCGCCCACTGTCGAAGTGCTAC ] [+] EMBL BM626652 [ CCGCTTTCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGT ] [+] EMBL BM580846 [ccgttcCTTTCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTCGAACGATGATACATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCCAAGGATGCAATCGTCCCTGGAAAACAGGCGTACATCTCTGGCTTTGGAGTCACAGAGGAGAACAATGCTGA AGTGTTAAAGGCCG CCACCATCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCCTGATGTGATGCGCGAGTTTATGCTGTGTGCCGGGATTTTGGCTGGTGGGGTGGACTCGTGCCAG] consensusID : consensus_5537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CCGCCCACGCGTCCGCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTCGAACGATGATACATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCCAAGGATGCAATCGTCCCTGGAAAACAGGCGTACATCTCTGGCTTTGGAGTCACAGAGGAGAACAATGCTGAAGTGTTAAAGGCCGCCACCATCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCTGATGTGATGCGCGAGTTTATGCTGTGTGCCGGGAT] [+] EMBL BM650296 [CCGCCCACGCGTCCGCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTCGAACGATGATACATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCCAAGGATGCAATCGTCCCTGGAAAACAGGCGTACATCTCTGGCTTTGGAGTCACAGAGGAGAACAATGCTGAAGTGTTAAAGGCCGCCACCATCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCTGATGTGATGCGCGAGTTTATGCTGTGTGCCGGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5537#0 ----CCGC-CGCTTTCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTC 55 consensus_5537#1 CCGCCCACGCGTCCGCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTC 60 ** * ** ********************************************* consensus_5537#0 GTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGAC 115 consensus_5537#1 GTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGAC 120 ************************************************************ consensus_5537#0 TGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCG 175 consensus_5537#1 TGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCG 180 ************************************************************ consensus_5537#0 GCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATT 235 consensus_5537#1 GCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATT 240 ************************************************************ consensus_5537#0 GTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGC 295 consensus_5537#1 GTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGC 300 ************************************************************ consensus_5537#0 AGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAA 355 consensus_5537#1 AGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAA 360 ************************************************************ consensus_5537#0 TCGTCGAACGATGATAGATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTAC 415 consensus_5537#1 TCGTCGAACGATGATACATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTAC 420 **************** ******************************************* consensus_5537#0 AGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCGAAGGATGCAATCGTCCCTGGAAAA 475 consensus_5537#1 AGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCCAAGGATGCAATCGTCCCTGGAAAA 480 *********************************** ************************ consensus_5537#0 CAGGCGTACATCTCTGGCTTTGGAGACACAGAGGAAAACAATGCTGAAGTAGTGTTAAAG 535 consensus_5537#1 CAGGCGTACATCTCTGGCTTTGGAGTCACAGAGGAGAACAATGCTGAAGT---GTTAAAG 537 ************************* ********* ************** ******* consensus_5537#0 GCCGCCCACTGTCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCCTGATGTGA 595 consensus_5537#1 GCCGCC-ACCATCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCC-TGATGTGA 595 ****** ** **************************************** ******** consensus_5537#0 TGCGCGAGTTTATGCTGTGTGCCGGGATTTTGGCTGGTGGGGTGGACTCGTGCCAG 651 consensus_5537#1 TGCGCGAGTTTATGCTGTGTGCCGGGAT---------------------------- 623 **************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||