cluster # 5539

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Anopheles gambiae
cluster # 5539 cluster # 5539 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5539#0 length = 995 sequences # 2

consensus_5539#1 length = 694 sequences # 1
consensus_5539#2 length = 661 sequences # 1

consensusID : consensus_5539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 995
fasta sequence

                              [CCGCCCACGCGTCCGCAAGCAACAACAACAACAATCATTCCCTGCTTTCGGGCCAGGGCAAGCAGCAGCAACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGGCAACATAAACATCGATCTGGACAATCTGCTCGGCAATGGAGCGAAGGGTAGCAGGGGTGGATCGGGCGGTGGGGCCGGCGGTTCGAATGCACCCTCGATGAACCAGCTGAAAAGCATTCACTCTAGCCCGGTACACCAACCGATGGCGGCAGCGTTGAGCCCGCAGCCTCCCTATGGTGCCGGAGGAATGGCCCCGACGCCGATTAATTTGATGATGACTCCCATACAGCAGCAGCAGCAGCAGCAGCAACCGCCCCCGGTGGGCATGATGATGGGCGGTATTGGCGGTGGTGCCTTTCTGAACGGGAACAGCAATAACGCCGCTTCCACGCCGACTGGCGGTGCAAGTTTCGGATCGTTCAACGCGTTTCAATGATCCCACGCCGGCCTGGCCAAAAGTTTGGCGGCCTCTTGCTACTAACCCCGTCGGAGTTGCGAAGATGGGCGCAGCGCAGTAATAGAAGCAGAAGAATACGTCCACTGGAACGAACCTTGATTGGTGGTTGCCTTTGCGATCATCACTCCAGCTGTGCTAAGTAAGTAAAGTGTGATCGTTCGCGACAAAGCAAGCTGAGGGTGTGGCGATCGGTAAACAAAAAATAATGTGCATAGTAAAACAAAGTGTTAATTCCTCCAGAAACGCCAATCAATCTACTCTTCTTTCCCACCAATAGCCCACCACCACTAGTCCTGTACCTCGTCCTTGTATCTTGTTCCTATCCTCCACTTTGCTCTCCCAATCTCCCATTAAACTCGTTCCAACCAATGCGGCCTACACACAAACACACACACACACTCACCCATGCATGTATTGAAGGATATTATTTTGTGTTATACTTCCGGCTAGGTTTCAAATTGCAATTTAGTCATACTTAGATAG]

[+] EMBL BM582667             [CCGCCCACGCGTCCGCAAGCAACAACAACAACAATCATTCCCTGCTTTCGGGCCAGGGCAAGCAGCAGCAACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGGCAACATAAACATCGATCTGGACAATCTGCTCGGCAATGGAGCGAAGGGTAGCAGGGGTGGATCGGGCGGTGGGGCCGGCGGTTCGAATGCACCCTCGATGAACCAGCTGAAAAGCATTCACTCTAGCCCGGTACACCAACCGATGGCGGCAGCGTTGAGCCCGCAGCCTCCCTATGGTGCCGGAGGAATGGCCCCGACGCCGATTAATTTGATGATGACTCCCATACAGCAGCAGCAGCAGCAGCAGCAACCGCCCCCGGTGGGCATGATGATGGGCGGTATTGGCGGTGGTGCCTTTCTGAACGGGAACAGCAATAACGCCGCTTCCACGCCGACTGGCGGTGCAAGTTTCGGATCGTTCAACGCGTTTCAATGATCCCACGCCGGCCTGGCCAAAAGTTTGGCGGCCTCTTGCTACTAACCCCGTCGGAGTTGCGAAGATGGGCGCAGCGCAGTAATAGAAGCAGAAGAATACGTCCACTGGAACGAACCTTGATTGGTGGTTGCCTTTGCGATCATCACTCCAGCTGTGCTAAGTAAGTAAAGTGTGA                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM595100             [                                                                                                                                                                                                                                                                                                                                                                                                                                       ccgGCAATAACGCCGCTTCCACGCCGACTGGCGGTGCAAATTTCGGATCGTTCAACGCGTTTCAATGATCCCACGCCGGCCTGGCCAAAAGTTTGGCGGCCTCTTGCTACTAACCCCGTCGGAGTTGCGAAGATGGGCGCAGCGCAGTAGTAGAAGCAGAAGAATACGTCCACTCGAACGAACCTTGATTGGTGGTTGCCTTTGCGATCATCACTCCAGCTGTGCTAAGTAAGTAAAGTGTGATCGTTCGCGACAAAGCAAGCTGAGGGTGTGGCGATCGGTAAACAAAAAATAATGTGCATAGTAAAACAAAGTGTTAATTCCTCCAGAAACGCCAATCAATCTACTCTTCTTTCCCACCAATAGCCCACCACCACTAGTCCTGTACCTCGTCCTTGTATCTTGTTCCTATCCTCCACTTTGCTCTCCCAATCTCCCATTAAACTCGTTCCAACCAATGCGGCCTACACACAAACACACACACACACTCACCCATGCATGTATTGAAGGATATTATTTTGTGTTATACTTCCGGCTAGGTTTCAAATTGCAATTTAGTCATACTTAGATAG]




>consensus_5539#0
CCGCCCACGCGTCCGCAAGCAACAACAACAACAATCATTCCCTGCTTTCGGGCCAGGGCA
AGCAGCAGCAACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGGCAACA
TAAACATCGATCTGGACAATCTGCTCGGCAATGGAGCGAAGGGTAGCAGGGGTGGATCGG
GCGGTGGGGCCGGCGGTTCGAATGCACCCTCGATGAACCAGCTGAAAAGCATTCACTCTA
GCCCGGTACACCAACCGATGGCGGCAGCGTTGAGCCCGCAGCCTCCCTATGGTGCCGGAG
GAATGGCCCCGACGCCGATTAATTTGATGATGACTCCCATACAGCAGCAGCAGCAGCAGC
AGCAACCGCCCCCGGTGGGCATGATGATGGGCGGTATTGGCGGTGGTGCCTTTCTGAACG
GGAACAGCAATAACGCCGCTTCCACGCCGACTGGCGGTGCAAGTTTCGGATCGTTCAACG
CGTTTCAATGATCCCACGCCGGCCTGGCCAAAAGTTTGGCGGCCTCTTGCTACTAACCCC
GTCGGAGTTGCGAAGATGGGCGCAGCGCAGTAATAGAAGCAGAAGAATACGTCCACTGGA
ACGAACCTTGATTGGTGGTTGCCTTTGCGATCATCACTCCAGCTGTGCTAAGTAAGTAAA
GTGTGATCGTTCGCGACAAAGCAAGCTGAGGGTGTGGCGATCGGTAAACAAAAAATAATG
TGCATAGTAAAACAAAGTGTTAATTCCTCCAGAAACGCCAATCAATCTACTCTTCTTTCC
CACCAATAGCCCACCACCACTAGTCCTGTACCTCGTCCTTGTATCTTGTTCCTATCCTCC
ACTTTGCTCTCCCAATCTCCCATTAAACTCGTTCCAACCAATGCGGCCTACACACAAACA
CACACACACACTCACCCATGCATGTATTGAAGGATATTATTTTGTGTTATACTTCCGGCT
AGGTTTCAAATTGCAATTTAGTCATACTTAGATAG

consensusID : consensus_5539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [ACCCACGCGTCCGGGACGACTTCAACCCAAGAGCTACGGAAGACTTTGGAGATTTTGAATCGGCCTTTGGTGCTAGTACCGGCAAACCGGTATTAACCACAACTACGAAGGGAGATGATTTTGCCGATTTCGCAGCATTCGGAAAAGAGCCCACGCAGCCTGCAGCGGCTGCACCTAGCACGGAAGCGAGCACCGATCTACTGTTTGGTCTGAGTGTTGGGAACACTAGCACGGGGGCATCGAACAATGGTGGAGCACAGATCGATATTCTTTCGGATTTAAGTGGCCTTTCGCTCGGCTCCAACTCAAACGCGACACTATATCCATCGATGAACAATGGTTCCGGTGGATTGCTGCAACCAACACCTCTCCTAGCGGCCAATGCAAGCAACAACAACAACAATCATTCCCTGCTTTCGGGCCAGGGCAAGCAGCAGCAACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGGCAACATAAACATCGATCTGGACAATCTGCTCGGCAATGGAGCGAAGGGTAGCAGGGGGTGGATCGGGCGGTGGGGCCGGCGGTTCGAATGCACCCTCGATGAACCAGCTGAAAAGCATTCACTCTAGCCCGGTACACCAACCGATGGCGGCAGCGTTGAGCCCGCAGCCTCCCTATGGTGCCGGAGGAATGGGCCCGACGCCGATTAATT]

[+] EMBL BM622030             [ACCCACGCGTCCGGGACGACTTCAACCCAAGAGCTACGGAAGACTTTGGAGATTTTGAATCGGCCTTTGGTGCTAGTACCGGCAAACCGGTATTAACCACAACTACGAAGGGAGATGATTTTGCCGATTTCGCAGCATTCGGAAAAGAGCCCACGCAGCCTGCAGCGGCTGCACCTAGCACGGAAGCGAGCACCGATCTACTGTTTGGTCTGAGTGTTGGGAACACTAGCACGGGGGCATCGAACAATGGTGGAGCACAGATCGATATTCTTTCGGATTTAAGTGGCCTTTCGCTCGGCTCCAACTCAAACGCGACACTATATCCATCGATGAACAATGGTTCCGGTGGATTGCTGCAACCAACACCTCTCCTAGCGGCCAATGCAAGCAACAACAACAACAATCATTCCCTGCTTTCGGGCCAGGGCAAGCAGCAGCAACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGGCAACATAAACATCGATCTGGACAATCTGCTCGGCAATGGAGCGAAGGGTAGCAGGGGGTGGATCGGGCGGTGGGGCCGGCGGTTCGAATGCACCCTCGATGAACCAGCTGAAAAGCATTCACTCTAGCCCGGTACACCAACCGATGGCGGCAGCGTTGAGCCCGCAGCCTCCCTATGGTGCCGGAGGAATGGGCCCGACGCCGATTAATT]




>consensus_5539#1
ACCCACGCGTCCGGGACGACTTCAACCCAAGAGCTACGGAAGACTTTGGAGATTTTGAAT
CGGCCTTTGGTGCTAGTACCGGCAAACCGGTATTAACCACAACTACGAAGGGAGATGATT
TTGCCGATTTCGCAGCATTCGGAAAAGAGCCCACGCAGCCTGCAGCGGCTGCACCTAGCA
CGGAAGCGAGCACCGATCTACTGTTTGGTCTGAGTGTTGGGAACACTAGCACGGGGGCAT
CGAACAATGGTGGAGCACAGATCGATATTCTTTCGGATTTAAGTGGCCTTTCGCTCGGCT
CCAACTCAAACGCGACACTATATCCATCGATGAACAATGGTTCCGGTGGATTGCTGCAAC
CAACACCTCTCCTAGCGGCCAATGCAAGCAACAACAACAACAATCATTCCCTGCTTTCGG
GCCAGGGCAAGCAGCAGCAACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACG
CCGGCAACATAAACATCGATCTGGACAATCTGCTCGGCAATGGAGCGAAGGGTAGCAGGG
GGTGGATCGGGCGGTGGGGCCGGCGGTTCGAATGCACCCTCGATGAACCAGCTGAAAAGC
ATTCACTCTAGCCCGGTACACCAACCGATGGCGGCAGCGTTGAGCCCGCAGCCTCCCTAT
GGTGCCGGAGGAATGGGCCCGACGCCGATTAATT

consensusID : consensus_5539#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [CCGCGCATCAGCCGCATCGGCATCGGCAACGCCGGTCGACCAGTTTGGCATCAATTCTCCAACACATCGCAATACGCATGCCGAAGAAATAGTAGGCACGGGAGGAAAGCAGCAAGACATAATAGATGATCTGTTTAAAACTTGTCCCACAAAATCGGCTTCCACCACGGATGCCCTGGTAGATGAGGACGACTTCAACCCAAGAGCTACGGAAGACTTTGGAGATTTTGAATCGGCCTTTGGTGCTAGTACCGGCAAACCGGTATTAACCACAACTACGAAGGGAGATGATTTTGCCGACTTCGCAGCATTCGGAAAAGAGCCCACGCAGCCTGCAGCGGCTGCACCTAGCACGGAAGCGAGCACCGATCTACTGTTTGGTCTGAGTGTTGGGAACACTAGCACGGGAGCATCGAACAATGGTGGAGCACAGATCGATATTCTTTCGGATTTAAGTGGCCTTTCGCTCGGCTCCAACTCAAACGCGACACTATATCCATCGATGAACAATGGTTCCGGTGGATTGCTGCAACCAACACCTCTCCTAGCGGCCAATGCAAGCAACAACAACAACAATCATTCCCTGCTTTCGGGCCAGGGCAAGCAGCAGCAACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGGCAAC]

[+] EMBL BM580963             [CCGCGCATCAGCCGCATCGGCATCGGCAACGCCGGTCGACCAGTTTGGCATCAATTCTCCAACACATCGCAATACGCATGCCGAAGAAATAGTAGGCACGGGAGGAAAGCAGCAAGACATAATAGATGATCTGTTTAAAACTTGTCCCACAAAATCGGCTTCCACCACGGATGCCCTGGTAGATGAGGACGACTTCAACCCAAGAGCTACGGAAGACTTTGGAGATTTTGAATCGGCCTTTGGTGCTAGTACCGGCAAACCGGTATTAACCACAACTACGAAGGGAGATGATTTTGCCGACTTCGCAGCATTCGGAAAAGAGCCCACGCAGCCTGCAGCGGCTGCACCTAGCACGGAAGCGAGCACCGATCTACTGTTTGGTCTGAGTGTTGGGAACACTAGCACGGGAGCATCGAACAATGGTGGAGCACAGATCGATATTCTTTCGGATTTAAGTGGCCTTTCGCTCGGCTCCAACTCAAACGCGACACTATATCCATCGATGAACAATGGTTCCGGTGGATTGCTGCAACCAACACCTCTCCTAGCGGCCAATGCAAGCAACAACAACAACAATCATTCCCTGCTTTCGGGCCAGGGCAAGCAGCAGCAACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGGCAAC]




>consensus_5539#2
CCGCGCATCAGCCGCATCGGCATCGGCAACGCCGGTCGACCAGTTTGGCATCAATTCTCC
AACACATCGCAATACGCATGCCGAAGAAATAGTAGGCACGGGAGGAAAGCAGCAAGACAT
AATAGATGATCTGTTTAAAACTTGTCCCACAAAATCGGCTTCCACCACGGATGCCCTGGT
AGATGAGGACGACTTCAACCCAAGAGCTACGGAAGACTTTGGAGATTTTGAATCGGCCTT
TGGTGCTAGTACCGGCAAACCGGTATTAACCACAACTACGAAGGGAGATGATTTTGCCGA
CTTCGCAGCATTCGGAAAAGAGCCCACGCAGCCTGCAGCGGCTGCACCTAGCACGGAAGC
GAGCACCGATCTACTGTTTGGTCTGAGTGTTGGGAACACTAGCACGGGAGCATCGAACAA
TGGTGGAGCACAGATCGATATTCTTTCGGATTTAAGTGGCCTTTCGCTCGGCTCCAACTC
AAACGCGACACTATATCCATCGATGAACAATGGTTCCGGTGGATTGCTGCAACCAACACC
TCTCCTAGCGGCCAATGCAAGCAACAACAACAACAATCATTCCCTGCTTTCGGGCCAGGG
CAAGCAGCAGCAACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGGCAA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5539#1      ------------------------------------------------------------
consensus_5539#2      ------------------------------------------------------------
consensus_5539#0      CCGCCCACGCGTCCGCAAGCAACAACAACAACAATCATTCCCTGCTTTCGGGCCAGGGCA 60
                                                                                  

consensus_5539#1      ------------------------------------------------------------
consensus_5539#2      ----CCGCGCATCAGCCGCATCGGCAT-CGGCAACGCCG-GTCGACCAGT-TTGGCATCA 53
consensus_5539#0      AGCAGCAGCAACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGGCAACA 120
                                                                                  

consensus_5539#1      ------------------------------------------------------------
consensus_5539#2      ATTCTCCAACACATCGCAATACGCATGCCGAAGAAATAGTAGGCACGGGAGGAAAGCAGC 113
consensus_5539#0      TAAACATCGATCTGGACAATCTGCTCGGCAATGGAGCGAAGGGTAGCAGGGGTGGATCGG 180
                                                                                  

consensus_5539#1      ------------------------------------------------------------
consensus_5539#2      AAGACATAATAGATGATCTGTTTAAAACTT----GTCCCACAAAATCGGCTTCCACCACG 169
consensus_5539#0      GCGGTGGGGCCGGCGGTTCGAATGCACCCTCGATGAACCAGCTGAAAAGCATTCACTCTA 240
                                                                                  

consensus_5539#1      -------ACCCACGCGTCCG-GGACGAC-TTCAACCCAAGAGCTACGGAAGACTTTGGAG 51
consensus_5539#2      G----ATGCCCTGGTAGATGAGGACGAC-TTCAACCCAAGAGCTACGGAAGACTTTGGAG 224
consensus_5539#0      GCCCGGTACACCAACCGATGGCGGCAGCGTTGAGCCCGCAGCCTCCCTATGGTGCCGGAG 300
                              * *        *  * *  * ** * ***     ** *  * *     ****

consensus_5539#1      ATTTTGAATCGGCC--------TTTGGTGCTAGTACCGGCAAACCGGTATTAACCACAAC 103
consensus_5539#2      ATTTTGAATCGGCC--------TTTGGTGCTAGTACCGGCAAACCGGTATTAACCACAAC 276
consensus_5539#0      GAATGGCCCCGACGCCGATTAATTTGATGATGACTCCCATACAGCAGCAGCAGCAGCAGC 360
                         * *   ** *         **** ** *    **   * * * * *  * *  ** *

consensus_5539#1      TACGAAGGGA---GATGATTTTGCCGATTTCGCAGCATTCGGAAAAGAGCCCACGCAGCC 160
consensus_5539#2      TACGAAGGGA---GATGATTTTGCCGACTTCGCAGCATTCGGAAAAGAGCCCACGCAGCC 333
consensus_5539#0      AGCAACCGCCCCCGGTGGGCATGATGA-TGGGCGGTATTGGCGGTGGTGCCTTTCTGAAC 419
                        * *  *     * **    **  ** *  ** * *** *     * ***        *

consensus_5539#1      TGCAGCGGC-----TGCACCTAGCACGGAAGCGAGCACCG--ATCTACTGTTTGGTCTGA 213
consensus_5539#2      TGCAGCGGC-----TGCACCTAGCACGGAAGCGAGCACCG--ATCTACTGTTTGGTCTGA 386
consensus_5539#0      GGGAACAGCAATAACGCCGCTTCCACGCCGACTGGCGGTGCAAGTTTCGGATCGTTCAAC 479
                       * * * **      **  **  ****    *  **   *  *  * * * * * **   

consensus_5539#1      GTGTTGGGAACA-CTAGCACGGGGGCATCGAACAAT--GGTGGAGCACAGATCGATATTC 270
consensus_5539#2      GTGTTGGGAACA-CTAGCACGGGAGCATCGAACAAT--GGTGGAGCACAGATCGATATTC 443
consensus_5539#0      GCGTTTCAATGATCCCACGCCGGCCTGGCCAAAAGTTTGGCGGCCTCTTGCTACTAACCC 539
                      * ***   *  * *   * * **     * ** * *  ** **      * *    *  *

consensus_5539#1      TTTCGGATTTAAGTGGCCTTTCGCTCGGCTCCAACTCAAACGCGACACTATATCCATCG- 329
consensus_5539#2      TTTCGGATTTAAGTGGCCTTTCGCTCGGCTCCAACTCAAACGCGACACTATATCCATCG- 502
consensus_5539#0      CGTCGGAGTTGCGAAGATGGGCGCAGCGCAGTAATAGAAGCAGAAGAATACGTCCACTGG 599
                        ***** **  *  *     ***   **   **   ** *   * * **  ****  * 

consensus_5539#1      -ATGAACAATGGTTCCGGTGGATTGCTGCAACCAACACCTCTCCTAGCGGCCAATGCAAG 388
consensus_5539#2      -ATGAACAATGGTTCCGGTGGATTGCTGCAACCAACACCTCTCCTAGCGGCCAATGCAAG 561
consensus_5539#0      AACGAACCTTGATT--GGTGG-TTGCCTTTGCGATCATCACTCCAGCTGTGCTAAGTAAG 656
                       * ****  ** **  ***** ****     * * ** * ****    *  * * * ***

consensus_5539#1      CAA--------CAACAACAACAAT-CATTCCCTGCTTTCGGGCCAGGGCAAGCAGCAGCA 439
consensus_5539#2      CAA--------CAACAACAACAAT-CATTCCCTGCTTTCGGGCCAGGGCAAGCAGCAGCA 612
consensus_5539#0      TAAAGTGTGATCGTTCGCGACAAAGCAAGCTGAGGGTGTGGCGATCGGTAAACAAAAAAT 716
                       **        *     * ****  **  *   *  *  **     ** ** **  *   

consensus_5539#1      ACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGG-CAACATAAACATCG 498
consensus_5539#2      ACCTGCCACAGCAGCAAACGTCGGCACCACGTGGAAGAACGCCGG-CAAC---------- 661
consensus_5539#0      AATGTGCATAGTAAAACAAAGTGTTAATTCCTCCAGAAACGCCAATCAATCTACTCTTCT 776
                      *     ** ** *  * *    *  *   * *  *  ******   ***           

consensus_5539#1      ATCTGGACAAT--CTGCTCGGCAATGGAGCGAAGGGTAGCAGGGGGTGGATCGGGCGGTG 556
consensus_5539#2      ------------------------------------------------------------
consensus_5539#0      TTCCCACCAATAGCCCACCACCACTAGTCCTGTACCTCGTCCTTGTATCTTGTTCCTATC 836
                                                                                  

consensus_5539#1      GGGCCGGCGGTTCGAATGCACCCTCGATGAACCAGCTGAAAAGCATTCACTCTAGCCCGG 616
consensus_5539#2      ------------------------------------------------------------
consensus_5539#0      CTCCACTTTGCTCTCCCAATCTCCCATTAAACTCGTTCCAACCAATGCGGCCTACACACA 896
                                                                                  

consensus_5539#1      TACACCAACCGATGGCGGCAGCGTTGAGCCCGCAGCCTCCCTATGGTGCCGGAGGAATGG 676
consensus_5539#2      ------------------------------------------------------------
consensus_5539#0      AACACACACACACACTCACCCATGCATGTATTGAAGGATATTATTTTGTGTTATACTTCC 956
                                                                                  

consensus_5539#1      GCCCGACGCCGATTAATT--------------------- 694
consensus_5539#2      ---------------------------------------
consensus_5539#0      GGCTAGGTTTCAAATTGCAATTTAGTCATACTTAGATAG 995