These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1193 fasta sequence [CTTTTATTATTCGAACTATTTTCTGTTGTTTATTATACCTCTTCCAGTTACGTTATTTCCTGCGTTATGTTTAAGCTTTATCTTATATTTCATTTATGTTGTTGAGGTATGAAGGTATAATTTTTCAGGGTTTAGGGGTATGTTCACGATGATGTTCACGCTCACACACACAGACACAAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCG--GTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAACCATGTACCAGGCGGTGTTAGAGGGATCAACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAGCCAGCCACCACTTTCGAATCGATCAAAAAGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCTCACTCCGTTATACAGTTAGTTTGATGATATCATTAGAAAAACGTTTAAAGAAGCAGGGAAACATTACTCTTTTGTGCATTTTATTTCGCATTATTTCGATATAGAGCTATATACTCACTGTTCGGGTGGAAGTTGCGAGCGTGTGTAACACCTTAAAGTAAAACCCATTCTCCATCCATTGACTTGGCCTATTTCCGGTAAAATCCGTAAATCCGTAAATTCGATACTTAGCAAATGAGGATAGACAGGCTTGCTTGCGGAGCTTGCACAAGCGTATGAGAAATGCATTTTTGTATGTACACGTAACCATACTCTACTCTAGCGAACCTATAGATTTCATTTCAAATAATTATATAATTAACGAGATGTCGCTAAACGGCGTATACTTTCCTCTCCCAGTGTTCGAAATGTACCTTTTTCTCCCTTTCAAAAACAAAAAACAAAACAAAACCGAACGAGATACACAACATAGTTCATCATACACACTTTGTACGAATAGTGCTGCTATAACAGATGATTTATATGGGCTGGGCGTCTCCTGCGGGTGGCGTAGCAGGTGGGAGAAATGTGCATAAAGTAACAATTATAGCAACAATTACGAATGCTAACTTTAAACCAATGCAACCCCACATAGAACAACCGAGAAGCGTATATGCACAGCAAAGATAAAGATTAGATGTATTTGACTCAACCCCAACACTCCAAACATGGAATGGCAAACACTCCAAAGGTGCG] [+] EMBL BX616716 [CTTTTATTATTCGAACTATTTTCTGTTGTTTATTATACCTCTTCCAGTTACGTTATTTCCTGCGTTATGTTTAAGCTTTATCTTATATTTCATTTATGTTGTTGAGGTATGAAGGTATAATTTTTCAGGGTTTAGGGGTATGTTCACGATGATGTTCACGCTCACACACACAGACACAAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCG GTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAACCATGTACCAGGCGGTGTTAGAGGGATCAACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAGCCAGCCACCACTTTCGAATCGATCAAAAAGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCTCACTCCGTTATACAGTTAGTTTGATGATATCATTAGAAAAACGTTTAAAGAAGCAGGGAAACATTACTCTTTTGTGCATTTTATTTCGCATTATTTCGATATAGAGCTATATACTCACTGTTCGGGTGGAAGTTGCGAGCGTGTGTAACACCTTAAAGTAAAACCCATTCTCCATCCATTGACTTGGCCTATTTCCGGT AAATCCGTAAATCCGTAAATTCGATACTTAGCAAATGAGGATAGACAGGCTTGCTTGCGGAGCTTGCACAAGCGTATGAGAAATGCATTTTTGTATGTACACGTAACCA ] [+] EMBL BX626400 [ TCCTGCGTTATGTTTAAGCTTTATCTTATATTTCATTTAGGTTGTTGAGGTATGAAGGTATAATTTTTCAGGGTTTAGGGGTATGTTCACGATGATGTTCACGCTCACACACACAGACACAAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCGGTGTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAACCATGTACCAGGCGGTGTTAGAGGGATCAACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAGCCAGCCACCACTTTCGAATCGATCAAAAAGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCTCACTCCGTTATACAGTTAGTTTGATGATATCATTAGAAAAACGTTTAAAGAAGCAGGGAAACATTACTCTTTTGTGCATTTTATTTCGCATTATTTCGATATAGAGCTATATACTCACTGTTCGGGTGGAAGTTGCGAGCGTGTGTAACACCTTAAAGTAAAACCCATTCTCCATCCATTGACTTGGCCTATTTCCGGTAAAATCCGTAAATCCGTAAATTCGATACTTAGCAAATGAGGATAGACAGGCTTGCTTGCG ] [+] EMBL BX617657 [ CTATATACTCACTGTTCGGGTGGAAGTTGCGAGCGTGTGTAACACCTTAAAGTAAAACCCATTCTCCATCCATTGACTTGGCCTATTTCCGGTAAAATCCGTAAATCCGTAAATTCGATACTTAGCAAATGAGGATAGACAGGCTTGCTTGCGGAGCTTGCACAAGCGTATGAGAAATGCATTTTTGTATGTACACGTAACCATACTCTACTCTAGCGAACCTATAGATTTCATTTCAAATAATTATATAATTAACGAGATGTCGCTAAACGGCGTATACTTTCCTCTCCCAGTGTTCGAAATGTACCTTTTTCTCCCTTTCAAAAACAAAAAACAAAACAAAACCGAACGAGATACACAACATAGTTCATCATACACACTTTGTACGAATAGTGCTGCTATAACAGATGATTTATATGGGCTGGGCGTCTCCTGCGGGTGGCGTAGCAGGTGGGAGAAATGTGCATAAAGTAACAATTATAGCAACAATTACGAATGCTAACTTTAAACCAATGCAACCCCACATAGAACAACCGAGAAGCGTATATGCACAGCAAAGATAAAGATTAGATGTATTTGACTCAACCCCAACACTCCAAACATGGAATGGCAAACACTCCAAAGGTGCG] consensusID : consensus_5545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGGTATGTTAATTCAACTCTCGACTCCATTTGTTTTGTTATTGTTTTGTTTTCTTCTCCAGAACAAGAACCACCTCTTTTTTTTCTATTTTATTTTTCTCACCAATAATGATTTTCCACTCAGACATTCACCATGTGTATATCGTTTTGTTTTACTGTCGATCGCCCACATTACCGGTCACTACACTACTACTACTACTACTACTAGGGCCTAGGGCTAGGCTAGTGCTAGCCAACAACACAAAGCTATACACTTATTTGTACACATTTTACTTCACTAACTTACTTCATCCCACTCCAGCGAGGGAGTGGAGGAAGAAAAACAAGCTCCCTCTGTTGTAACAAGCTTTTGGGGAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCGGTGTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAAACATGTACCAGGCGGTGTTAGAGGGTTTCACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAACCAGCCACCACTTTCGAATCGATCAAAACGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCT] [+] EMBL BM640727 [CCGCGGACGCGTGGGCGGACGCGTGGGGGTATGTTAATTCAACTCTCGACTCCATTTGTTTTGTTATTGTTTTGTTTTCTTCTCCAGAACAAGAACCACCTCTTTTTTTTCTATTTTATTTTTCTCACCAATAATGATTTTCCACTCAGACATTCACCATGTGTATATCGTTTTGTTTTACTGTCGATCGCCCACATTACCGGTCACTACACTACTACTACTACTACTACTAGGGCCTAGGGCTAGGCTAGTGCTAGCCAACAACACAAAGCTATACACTTATTTGTACACATTTTACTTCACTAACTTACTTCATCCCACTCCAGCGAGGGAGTGGAGGAAGAAAAACAAGCTCCCTCTGTTGTAACAAGCTTTTGGGGAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCGGTGTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAAACATGTACCAGGCGGTGTTAGAGGGTTTCACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAACCAGCCACCACTTTCGAATCGATCAAAACGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5545#0 ------------------------------------------------------------ consensus_5545#1 CCGCGGACGCGTGGGCGGACGCGTGGGGGTATGTTAATTCAACTCTCGACTCCATTTGTT 60 consensus_5545#0 ------------------------------------------------------------ consensus_5545#1 TTGTTATTGTTTTGTTTTCTTCTCCAGAACAAGAACCACCTCTTTTTTTTCTATTTTATT 120 consensus_5545#0 ------------------------------------------------------------ consensus_5545#1 TTTCTCACCAATAATGATTTTCCACTCAGACATTCACCATGTGTATATCGTTTTGTTTTA 180 consensus_5545#0 ----------CTTTTATTATTCGA-ACTATTTT-CTGTTGTT--TATTA-TACCTCTTCC 45 consensus_5545#1 CTGTCGATCGCCCACATTACCGGTCACTACACTACTACTACTACTACTACTAGGGCCTAG 240 * **** * **** * ** * * ** ** ** * * consensus_5545#0 AGTTACGTTATTTCCTGC-GTTATGTTTAAGCTTTATCTTATATTTCATTTATGTTGTTG 104 consensus_5545#1 GGCTAGGCTAGTGCTAGCCAACAACACAAAGCTATACACTTATTTGTACACATTTTACTT 300 * ** * ** * * ** * ***** ** * ** * ** ** * consensus_5545#0 AGGTA--TGAAGGTATAATTTTTCAGGGTTTAGGGGTATGTTCACGATGATGTTCACGCT 162 consensus_5545#1 CACTAACTTACTTCATCCCACTCCAGCGAGGGAGTGGAGGAAGAAAAACAAGCTCCCTCT 360 ** * * ** * *** * * * * * * * * * ** * ** consensus_5545#0 CACACACACAGACAC-----AAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTC 217 consensus_5545#1 GTTGTA-ACAAGCTTTTGGGGAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTC 419 * *** * *************************************** consensus_5545#0 GGT--AGATGCTATTTTGGTAGCCTTCGCGCAAGGAACCATGTACCAGGCGGTGTTAGAG 275 consensus_5545#1 GGTGTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAAACATGTACCAGGCGGTGTTAGAG 479 *** ******************************** ********************** consensus_5545#0 GGATCAACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTA 335 consensus_5545#1 GGTTTCACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTA 539 ** * ****************************************************** consensus_5545#0 GTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAGCCAGCCACCACTTTCGAATCGAT 395 consensus_5545#1 GTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAACCAGCCACCACTTTCGAATCGAT 599 ************************************ *********************** consensus_5545#0 CAAAAAGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACAC 455 consensus_5545#1 CAAAACGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACAC 659 ***** ****************************************************** consensus_5545#0 TCTCACTCCGTTATACAGTTAGTTTGATGATATCATTAGAAAAACGTTTAAAGAAGCAGG 515 consensus_5545#1 TCT--------------------------------------------------------- 662 *** consensus_5545#0 GAAACATTACTCTTTTGTGCATTTTATTTCGCATTATTTCGATATAGAGCTATATACTCA 575 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 CTGTTCGGGTGGAAGTTGCGAGCGTGTGTAACACCTTAAAGTAAAACCCATTCTCCATCC 635 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 ATTGACTTGGCCTATTTCCGGTAAAATCCGTAAATCCGTAAATTCGATACTTAGCAAATG 695 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 AGGATAGACAGGCTTGCTTGCGGAGCTTGCACAAGCGTATGAGAAATGCATTTTTGTATG 755 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 TACACGTAACCATACTCTACTCTAGCGAACCTATAGATTTCATTTCAAATAATTATATAA 815 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 TTAACGAGATGTCGCTAAACGGCGTATACTTTCCTCTCCCAGTGTTCGAAATGTACCTTT 875 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 TTCTCCCTTTCAAAAACAAAAAACAAAACAAAACCGAACGAGATACACAACATAGTTCAT 935 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 CATACACACTTTGTACGAATAGTGCTGCTATAACAGATGATTTATATGGGCTGGGCGTCT 995 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 CCTGCGGGTGGCGTAGCAGGTGGGAGAAATGTGCATAAAGTAACAATTATAGCAACAATT 1055 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 ACGAATGCTAACTTTAAACCAATGCAACCCCACATAGAACAACCGAGAAGCGTATATGCA 1115 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 CAGCAAAGATAAAGATTAGATGTATTTGACTCAACCCCAACACTCCAAACATGGAATGGC 1175 consensus_5545#1 ------------------------------------------------------------ consensus_5545#0 AAACACTCCAAAGGTGCG 1193 consensus_5545#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||