cluster # 5545

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Anopheles gambiae
cluster # 5545 cluster # 5545 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5545#0 length = 1193 sequences # 3

consensus_5545#1 length = 662 sequences # 1

consensusID : consensus_5545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1193
fasta sequence

                              [CTTTTATTATTCGAACTATTTTCTGTTGTTTATTATACCTCTTCCAGTTACGTTATTTCCTGCGTTATGTTTAAGCTTTATCTTATATTTCATTTATGTTGTTGAGGTATGAAGGTATAATTTTTCAGGGTTTAGGGGTATGTTCACGATGATGTTCACGCTCACACACACAGACACAAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCG--GTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAACCATGTACCAGGCGGTGTTAGAGGGATCAACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAGCCAGCCACCACTTTCGAATCGATCAAAAAGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCTCACTCCGTTATACAGTTAGTTTGATGATATCATTAGAAAAACGTTTAAAGAAGCAGGGAAACATTACTCTTTTGTGCATTTTATTTCGCATTATTTCGATATAGAGCTATATACTCACTGTTCGGGTGGAAGTTGCGAGCGTGTGTAACACCTTAAAGTAAAACCCATTCTCCATCCATTGACTTGGCCTATTTCCGGTAAAATCCGTAAATCCGTAAATTCGATACTTAGCAAATGAGGATAGACAGGCTTGCTTGCGGAGCTTGCACAAGCGTATGAGAAATGCATTTTTGTATGTACACGTAACCATACTCTACTCTAGCGAACCTATAGATTTCATTTCAAATAATTATATAATTAACGAGATGTCGCTAAACGGCGTATACTTTCCTCTCCCAGTGTTCGAAATGTACCTTTTTCTCCCTTTCAAAAACAAAAAACAAAACAAAACCGAACGAGATACACAACATAGTTCATCATACACACTTTGTACGAATAGTGCTGCTATAACAGATGATTTATATGGGCTGGGCGTCTCCTGCGGGTGGCGTAGCAGGTGGGAGAAATGTGCATAAAGTAACAATTATAGCAACAATTACGAATGCTAACTTTAAACCAATGCAACCCCACATAGAACAACCGAGAAGCGTATATGCACAGCAAAGATAAAGATTAGATGTATTTGACTCAACCCCAACACTCCAAACATGGAATGGCAAACACTCCAAAGGTGCG]

[+] EMBL BX616716             [CTTTTATTATTCGAACTATTTTCTGTTGTTTATTATACCTCTTCCAGTTACGTTATTTCCTGCGTTATGTTTAAGCTTTATCTTATATTTCATTTATGTTGTTGAGGTATGAAGGTATAATTTTTCAGGGTTTAGGGGTATGTTCACGATGATGTTCACGCTCACACACACAGACACAAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCG  GTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAACCATGTACCAGGCGGTGTTAGAGGGATCAACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAGCCAGCCACCACTTTCGAATCGATCAAAAAGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCTCACTCCGTTATACAGTTAGTTTGATGATATCATTAGAAAAACGTTTAAAGAAGCAGGGAAACATTACTCTTTTGTGCATTTTATTTCGCATTATTTCGATATAGAGCTATATACTCACTGTTCGGGTGGAAGTTGCGAGCGTGTGTAACACCTTAAAGTAAAACCCATTCTCCATCCATTGACTTGGCCTATTTCCGGT AAATCCGTAAATCCGTAAATTCGATACTTAGCAAATGAGGATAGACAGGCTTGCTTGCGGAGCTTGCACAAGCGTATGAGAAATGCATTTTTGTATGTACACGTAACCA                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX626400             [                                                         TCCTGCGTTATGTTTAAGCTTTATCTTATATTTCATTTAGGTTGTTGAGGTATGAAGGTATAATTTTTCAGGGTTTAGGGGTATGTTCACGATGATGTTCACGCTCACACACACAGACACAAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCGGTGTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAACCATGTACCAGGCGGTGTTAGAGGGATCAACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAGCCAGCCACCACTTTCGAATCGATCAAAAAGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCTCACTCCGTTATACAGTTAGTTTGATGATATCATTAGAAAAACGTTTAAAGAAGCAGGGAAACATTACTCTTTTGTGCATTTTATTTCGCATTATTTCGATATAGAGCTATATACTCACTGTTCGGGTGGAAGTTGCGAGCGTGTGTAACACCTTAAAGTAAAACCCATTCTCCATCCATTGACTTGGCCTATTTCCGGTAAAATCCGTAAATCCGTAAATTCGATACTTAGCAAATGAGGATAGACAGGCTTGCTTGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX617657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTATATACTCACTGTTCGGGTGGAAGTTGCGAGCGTGTGTAACACCTTAAAGTAAAACCCATTCTCCATCCATTGACTTGGCCTATTTCCGGTAAAATCCGTAAATCCGTAAATTCGATACTTAGCAAATGAGGATAGACAGGCTTGCTTGCGGAGCTTGCACAAGCGTATGAGAAATGCATTTTTGTATGTACACGTAACCATACTCTACTCTAGCGAACCTATAGATTTCATTTCAAATAATTATATAATTAACGAGATGTCGCTAAACGGCGTATACTTTCCTCTCCCAGTGTTCGAAATGTACCTTTTTCTCCCTTTCAAAAACAAAAAACAAAACAAAACCGAACGAGATACACAACATAGTTCATCATACACACTTTGTACGAATAGTGCTGCTATAACAGATGATTTATATGGGCTGGGCGTCTCCTGCGGGTGGCGTAGCAGGTGGGAGAAATGTGCATAAAGTAACAATTATAGCAACAATTACGAATGCTAACTTTAAACCAATGCAACCCCACATAGAACAACCGAGAAGCGTATATGCACAGCAAAGATAAAGATTAGATGTATTTGACTCAACCCCAACACTCCAAACATGGAATGGCAAACACTCCAAAGGTGCG]




>consensus_5545#0
CTTTTATTATTCGAACTATTTTCTGTTGTTTATTATACCTCTTCCAGTTACGTTATTTCC
TGCGTTATGTTTAAGCTTTATCTTATATTTCATTTATGTTGTTGAGGTATGAAGGTATAA
TTTTTCAGGGTTTAGGGGTATGTTCACGATGATGTTCACGCTCACACACACAGACACAAA
AACACACACAATCCTCCAACAGATGCCAACCAGTCTCGGTAGATGCTATTTTGGTAGCCT
TCGCGCAAGGAACCATGTACCAGGCGGTGTTAGAGGGATCAACACAGCAGGATGTGTGGA
GTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACT
TTGCACAACTAGCCAGCCACCACTTTCGAATCGATCAAAAAGTGTGTGATTTACATTCAG
CGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCTCACTCCGTTATACAGTTAGTTT
GATGATATCATTAGAAAAACGTTTAAAGAAGCAGGGAAACATTACTCTTTTGTGCATTTT
ATTTCGCATTATTTCGATATAGAGCTATATACTCACTGTTCGGGTGGAAGTTGCGAGCGT
GTGTAACACCTTAAAGTAAAACCCATTCTCCATCCATTGACTTGGCCTATTTCCGGTAAA
ATCCGTAAATCCGTAAATTCGATACTTAGCAAATGAGGATAGACAGGCTTGCTTGCGGAG
CTTGCACAAGCGTATGAGAAATGCATTTTTGTATGTACACGTAACCATACTCTACTCTAG
CGAACCTATAGATTTCATTTCAAATAATTATATAATTAACGAGATGTCGCTAAACGGCGT
ATACTTTCCTCTCCCAGTGTTCGAAATGTACCTTTTTCTCCCTTTCAAAAACAAAAAACA
AAACAAAACCGAACGAGATACACAACATAGTTCATCATACACACTTTGTACGAATAGTGC
TGCTATAACAGATGATTTATATGGGCTGGGCGTCTCCTGCGGGTGGCGTAGCAGGTGGGA
GAAATGTGCATAAAGTAACAATTATAGCAACAATTACGAATGCTAACTTTAAACCAATGC
AACCCCACATAGAACAACCGAGAAGCGTATATGCACAGCAAAGATAAAGATTAGATGTAT
TTGACTCAACCCCAACACTCCAAACATGGAATGGCAAACACTCCAAAGGTGCG

consensusID : consensus_5545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGGGTATGTTAATTCAACTCTCGACTCCATTTGTTTTGTTATTGTTTTGTTTTCTTCTCCAGAACAAGAACCACCTCTTTTTTTTCTATTTTATTTTTCTCACCAATAATGATTTTCCACTCAGACATTCACCATGTGTATATCGTTTTGTTTTACTGTCGATCGCCCACATTACCGGTCACTACACTACTACTACTACTACTACTAGGGCCTAGGGCTAGGCTAGTGCTAGCCAACAACACAAAGCTATACACTTATTTGTACACATTTTACTTCACTAACTTACTTCATCCCACTCCAGCGAGGGAGTGGAGGAAGAAAAACAAGCTCCCTCTGTTGTAACAAGCTTTTGGGGAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCGGTGTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAAACATGTACCAGGCGGTGTTAGAGGGTTTCACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAACCAGCCACCACTTTCGAATCGATCAAAACGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCT]

[+] EMBL BM640727             [CCGCGGACGCGTGGGCGGACGCGTGGGGGTATGTTAATTCAACTCTCGACTCCATTTGTTTTGTTATTGTTTTGTTTTCTTCTCCAGAACAAGAACCACCTCTTTTTTTTCTATTTTATTTTTCTCACCAATAATGATTTTCCACTCAGACATTCACCATGTGTATATCGTTTTGTTTTACTGTCGATCGCCCACATTACCGGTCACTACACTACTACTACTACTACTACTAGGGCCTAGGGCTAGGCTAGTGCTAGCCAACAACACAAAGCTATACACTTATTTGTACACATTTTACTTCACTAACTTACTTCATCCCACTCCAGCGAGGGAGTGGAGGAAGAAAAACAAGCTCCCTCTGTTGTAACAAGCTTTTGGGGAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCGGTGTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAAACATGTACCAGGCGGTGTTAGAGGGTTTCACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAGTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAACCAGCCACCACTTTCGAATCGATCAAAACGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACTCT]




>consensus_5545#1
CCGCGGACGCGTGGGCGGACGCGTGGGGGTATGTTAATTCAACTCTCGACTCCATTTGTT
TTGTTATTGTTTTGTTTTCTTCTCCAGAACAAGAACCACCTCTTTTTTTTCTATTTTATT
TTTCTCACCAATAATGATTTTCCACTCAGACATTCACCATGTGTATATCGTTTTGTTTTA
CTGTCGATCGCCCACATTACCGGTCACTACACTACTACTACTACTACTACTAGGGCCTAG
GGCTAGGCTAGTGCTAGCCAACAACACAAAGCTATACACTTATTTGTACACATTTTACTT
CACTAACTTACTTCATCCCACTCCAGCGAGGGAGTGGAGGAAGAAAAACAAGCTCCCTCT
GTTGTAACAAGCTTTTGGGGAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTCG
GTGTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAAACATGTACCAGGCGGTGTTAGAGG
GTTTCACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTAG
TCTAGTCACTGCCGCGGAAATACTTTGCACAACTAACCAGCCACCACTTTCGAATCGATC
AAAACGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACACT
CT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5545#0      ------------------------------------------------------------
consensus_5545#1      CCGCGGACGCGTGGGCGGACGCGTGGGGGTATGTTAATTCAACTCTCGACTCCATTTGTT 60
                                                                                  

consensus_5545#0      ------------------------------------------------------------
consensus_5545#1      TTGTTATTGTTTTGTTTTCTTCTCCAGAACAAGAACCACCTCTTTTTTTTCTATTTTATT 120
                                                                                  

consensus_5545#0      ------------------------------------------------------------
consensus_5545#1      TTTCTCACCAATAATGATTTTCCACTCAGACATTCACCATGTGTATATCGTTTTGTTTTA 180
                                                                                  

consensus_5545#0      ----------CTTTTATTATTCGA-ACTATTTT-CTGTTGTT--TATTA-TACCTCTTCC 45
consensus_5545#1      CTGTCGATCGCCCACATTACCGGTCACTACACTACTACTACTACTACTACTAGGGCCTAG 240
                                *    ****   *  ****   * **  *  *  ** ** **   * *  

consensus_5545#0      AGTTACGTTATTTCCTGC-GTTATGTTTAAGCTTTATCTTATATTTCATTTATGTTGTTG 104
consensus_5545#1      GGCTAGGCTAGTGCTAGCCAACAACACAAAGCTATACACTTATTTGTACACATTTTACTT 300
                       * ** * ** * *  **    *     ***** **   *   **  *   ** **  * 

consensus_5545#0      AGGTA--TGAAGGTATAATTTTTCAGGGTTTAGGGGTATGTTCACGATGATGTTCACGCT 162
consensus_5545#1      CACTAACTTACTTCATCCCACTCCAGCGAGGGAGTGGAGGAAGAAAAACAAGCTCCCTCT 360
                         **  * *    **     * *** *     * * * *   *  *  * * ** * **

consensus_5545#0      CACACACACAGACAC-----AAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTC 217
consensus_5545#1      GTTGTA-ACAAGCTTTTGGGGAAAACACACACAATCCTCCAACAGATGCCAACCAGTCTC 419
                           * ***  *        ***************************************

consensus_5545#0      GGT--AGATGCTATTTTGGTAGCCTTCGCGCAAGGAACCATGTACCAGGCGGTGTTAGAG 275
consensus_5545#1      GGTGTAGATGCTATTTTGGTAGCCTTCGCGCAAGGAAACATGTACCAGGCGGTGTTAGAG 479
                      ***  ******************************** **********************

consensus_5545#0      GGATCAACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTA 335
consensus_5545#1      GGTTTCACACAGCAGGATGTGTGGAGTAAACTTTGTATCTACTTCTCAGTATCACTTTTA 539
                      ** *  ******************************************************

consensus_5545#0      GTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAGCCAGCCACCACTTTCGAATCGAT 395
consensus_5545#1      GTCTAGTCACTGCCGCGGAAATACTTTGCACAACTAACCAGCCACCACTTTCGAATCGAT 599
                      ************************************ ***********************

consensus_5545#0      CAAAAAGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACAC 455
consensus_5545#1      CAAAACGTGTGTGATTTACATTCAGCGTTTGCCATTAATGAATTCATTGCAAAGCCACAC 659
                      ***** ******************************************************

consensus_5545#0      TCTCACTCCGTTATACAGTTAGTTTGATGATATCATTAGAAAAACGTTTAAAGAAGCAGG 515
consensus_5545#1      TCT--------------------------------------------------------- 662
                      ***                                                         

consensus_5545#0      GAAACATTACTCTTTTGTGCATTTTATTTCGCATTATTTCGATATAGAGCTATATACTCA 575
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      CTGTTCGGGTGGAAGTTGCGAGCGTGTGTAACACCTTAAAGTAAAACCCATTCTCCATCC 635
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      ATTGACTTGGCCTATTTCCGGTAAAATCCGTAAATCCGTAAATTCGATACTTAGCAAATG 695
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      AGGATAGACAGGCTTGCTTGCGGAGCTTGCACAAGCGTATGAGAAATGCATTTTTGTATG 755
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      TACACGTAACCATACTCTACTCTAGCGAACCTATAGATTTCATTTCAAATAATTATATAA 815
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      TTAACGAGATGTCGCTAAACGGCGTATACTTTCCTCTCCCAGTGTTCGAAATGTACCTTT 875
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      TTCTCCCTTTCAAAAACAAAAAACAAAACAAAACCGAACGAGATACACAACATAGTTCAT 935
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      CATACACACTTTGTACGAATAGTGCTGCTATAACAGATGATTTATATGGGCTGGGCGTCT 995
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      CCTGCGGGTGGCGTAGCAGGTGGGAGAAATGTGCATAAAGTAACAATTATAGCAACAATT 1055
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      ACGAATGCTAACTTTAAACCAATGCAACCCCACATAGAACAACCGAGAAGCGTATATGCA 1115
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      CAGCAAAGATAAAGATTAGATGTATTTGACTCAACCCCAACACTCCAAACATGGAATGGC 1175
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      AAACACTCCAAAGGTGCG 1193
consensus_5545#1      ------------------