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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1670 fasta sequence
[ATAACACCGGACATTGCTATCATTACAGGAAAGCAGCACATAAAAATAGTAAAAGCAACACGAAGACCACCGCTTATCTCGACATCCAATTCGACCATTTTGCACGGCAATTGTTCTAGTTGTTTCACAGCGAGCGGGTCTTTGTTTTGTTGTTTTAAACCGGCCAAATCATGACCAAGGATAGGAAAACATCTTTCCTCACCGAAGAGCTGCCACGAAAAATTCTTCACTACTGCCCAGAACTTGATGGCGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCATTTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTACGTACGAAAGCAACGATGGAACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTGCCCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGTGTACTACGGTGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCGTGCTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGGAACATCTGCGCTTAATGGCACGTCATATAGCATCGTTTCACGCGTGCACCTACGCCATGCGTCTCCGCAACGATGCCCGATTAGCCTCCCTAATCGAAGGCATTGCTCCGCTGGACTTTGTGGCAGGAGATAAAACGTTCACCAGCTACGATGTGCTGCTAAAGCTGGGCGCCAACAGGCTGTACAAGTATCTGGACGATCATCCCGAGCAGCTGGATAGTGAAGCGTTCAAGCGGGACATGAACAATCTACGCCAGCGGTACGGTACAACGCCGATCAGTCTGATGCAGGATTTACTTCGTAAGGATGAGACATTCTCGGTCATACTGCACGGTGACTACAACCGCAACAATGTGCTGTTCCGTACGGATGGCGCTGGCAAGCCGGTCGAGCTAAAGATGTTCGACTTTCAGGAAAATTCCTACGCAACGCCCGTTATCGATCTGACGTTTTATATGTACATGAGCATGACGGAGGAGATGCGCAACCGGTACTGGGATGCGGTCGTACTGGAATATCATACCGCACTGTTGGAAAGTCTGGCCGCAATTTTAAAAGTACCACAAGAGGATGGTCTGCTGGATCCGTATCGCGCTCGAGCCTTTTTTGGAACATTTCAAGCGTCATGCCATGTACGGGGTGATTGTGACGTTACACTTTCTACCCTGGATGATGTGCCCGGAGGAGGAGTGCGAACAGTTGGCGCACCATTTCGCGCGAGACGTACACTCGAAAGAGCTGGCCCACTGGACGCTGGTGTGCGGTGGAGAGGAGGTAGACAAAAGGCTGGTGGGAGTGTTGCGACATGCCAGCAGCAAGGGATATTTTGAGATCGTGAAGGAGTAGATCACGGTTTTAGAATGATTTACTTTTTTATATTTTGTTTAATCAATTTATGCAGCAAAGTCAGCTAAAATGATTAATTTTTTGTTAATTTTTTTATCACGTCAAAGTGCATTTATTTCAAAACAGTCAATAAATCTAGTAATCATACCATTACATAGGGTAAAAAAAAAAAA]
[+] EMBL CNS08J7I [ATAACACCGGACATTGCTATCATTACAGGAAAGCAGCACATAAAAATAGTAAAAGCAACACGAAGACCACCGCTTATCTCGACATCCAATTCGACCATTTTGCACGGCAATTGTTCTAGTTGTTTCACAGCGAGCGGGTCTTTGTTTTGTTGTTTTAAACCGGCCAAATCATGACCAAGGATAGGAAAACATCTTTCCTCACCGAAGAGCTGCCACGAAAAATTCTTCACTACTGCCCAGAACTTGATGGCGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCATTTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTACGTACGAAAGCAACGATGGAACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTGCCCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGTGTACTACGGTGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCGTGCTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGGAACATCTGCGCTTAATGGCACGTCATATAGCATCGTTTCACGCGTGCACCTACGCCATGCGTCTCCGCAACGATGCCCGATTAGCCTCCCTAATCGAAGGCATTGCTCCGCTGGACTTTGTGGCAGGAGATAAAACGTTCACCAGCTACGATGTGCTGCTAAAGCTGGGCGCCAACAGGCTGTACAAGTATCTGGACGATCATCCCGAGCAGCTGGATAGTGAAGCGTTCAAGCGGGACATGAACA ]
[-] EMBL CNS08J7J [ GTGCTGCTAAAGCTGGGCGCCAACAGGCTGTACAAGTATCTGGACGATCATCCCGAGCAGCTGGATAGTGAAGCGTTCAAGCGGGACATGAACAATCTACGCCAGCGGTACGGTACAACGCCGATCAGTCTGATGCAGGATTTACTTCGTAAGGATGAGACATTCTCGGTCATACTGCACGGTGACTACAACCGCAACAATGTGCTGTTCCGTACGGATGGCGCTGGCAAGCCGGTCGAGCTAAAGATGTTCGACTTTCAGGAAAATTCCTACGCAACGCCCGTTATCGATCTGACGTTTTATATGTACATGAGCATGACGGAGGAGATGCGCAACCGGTACTGGGATGCGGTCGTACTGGAATATCATACCGCACTGTTGGAAAGTCTGGCCGCAATTTTAAAAGTACCACAAGAGGATGGTCTGCTGGATCCGTATCGCGCTCGAGCCTTTTTTGGAACATTTCAAGCGTCATGCCATGTACGGGGTGATTGTGACGTTACACTTTCTACCCTGGATGATGTGCCCGGAGGAGGAGTGCGAACAGTTGGCGCACCATTTCGCGCGAGACGTACACTCGAAAGAGCTGGCCCACTGGACGCTGGTGTGCGGTGGAGAGGAGGTAGACAAAAGGCTGGTGGGAGTGTTGCGACATGCCAGCAGCAAGGGATATTTTGAGATCGTGAAGGAGTAGATCACGGTTTTAGAATGATTTACTTTTTTATATTTTGTTTAATCAATTTATGCAGCAAAGTCAGCTAAAATGATTAATTTTTTGTTAATTTTTTTATCACGTCAAAGTGCATTTATTTCAAAACAGTCAATAAATCTAGTAATCATACCATTACATAGGGTAAAAAAAAAAAA]
consensusID : consensus_5552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGTTGCAGGAAAGCAGCACATAAAAATAGTAAAAGAACACGAAGACCACCGCTTATCTCGACATCCAATTCGACCCGATTTTGCACGGCAATTGTTCTAGTTGTTTCACAGCGGGCGGGTGTTTGTTTTGTTGTTTTAAACCAGCCAAATCATGACCAAGGACAGGAAAACATCTTCCTCACTGAGGAGCTGCCGCGAAAAATTCTTCAATACTGCCCAGAACTTGATGGTGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCATTTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTAGGTACGAAAGCAACGATGGAACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTGCCCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGTGTACTACGGGTGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCGTGTTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGGAACATCTGCGCTTAATGGCACGTCATATAG]
[+] EMBL BM581583 [CCGCGGACGCGTGGGCGGACGCGTGGGTTGCAGGAAAGCAGCACATAAAAATAGTAAAAGAACACGAAGACCACCGCTTATCTCGACATCCAATTCGACCCGATTTTGCACGGCAATTGTTCTAGTTGTTTCACAGCGGGCGGGTGTTTGTTTTGTTGTTTTAAACCAGCCAAATCATGACCAAGGACAGGAAAACATCTTCCTCACTGAGGAGCTGCCGCGAAAAATTCTTCAATACTGCCCAGAACTTGATGGTGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCATTTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTAGGTACGAAAGCAACGATGGAACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTGCCCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGTGTACTACGGGTGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCGTGTTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGGAACATCTGCGCTTAATGGCACGTCATATAG]
consensusID : consensus_5552#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 207 fasta sequence
[NCAGCAGGAATCGCCACGAGGNTTATCGACGAGTCACAAGCTTCGCCGTAGGTACGAAAGCACGATGGAACTGTCGTTCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTATACGAAGGTGCTGCACCGCTGTCCAAGAACT]
[+] EMBL BX466165 [NCAGCAGGAATCGCCACGAGGNTTATCGACGAGTCACAAGCTTCGCCGTAGGTACGAAAGCACGATGGAACTGTCGTTCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTATACGAAGGTGCTGCACCGCTGTCCAAGAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5552#0 -----ATAACACCGGACATTGCTATCATTACAGGAAAGCAGCACATAAAAATAGTAAAAG 55
consensus_5552#1 CCGCGGACGCGTGGGCGGACGCGTGGGTTGCAGGAAAGCAGCACATAAAAATAGTAAAAG 60
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 CAACACGAAGACCACCGCTTATCTCGACATCCAATTCGACC--ATTTTGCACGGCAATTG 113
consensus_5552#1 -AACACGAAGACCACCGCTTATCTCGACATCCAATTCGACCCGATTTTGCACGGCAATTG 119
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 TTCTAGTTGTTTCACAGCGAGCGGGTCTTTGTTTTGTTGTTTTAAACCGGCCAAATCATG 173
consensus_5552#1 TTCTAGTTGTTTCACAGCGGGCGGGTGTTTGTTTTGTTGTTTTAAACCAGCCAAATCATG 179
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 ACCAAGGATAGGAAAACATCTTTCCTCACCGAAGAGCTGCCACGAAAAATTCTTCACTAC 233
consensus_5552#1 ACCAAGGACAGGAAAACATCTT-CCTCACTGAGGAGCTGCCGCGAAAAATTCTTCAATAC 238
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 TGCCCAGAACTTGATGGCGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCAT 293
consensus_5552#1 TGCCCAGAACTTGATGGTGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCAT 298
consensus_5552#2 ---------------------------------------------NCAGCAG-GAATCGC 14
** * ***
consensus_5552#0 TTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTACGTACGAAAGCAACGATGGA 353
consensus_5552#1 TTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTAGGTACGAAAGCAACGATGGA 358
consensus_5552#2 CACGAGGNTT----ATCGACGAGTCACAAGCTTCGCCGTAGGTACGAAAGCA-CGATGGA 69
** * ** ******* ********** ** *********** *******
consensus_5552#0 ACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGG 413
consensus_5552#1 ACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGG 418
consensus_5552#2 ACTGTCGTTCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGG 129
******** ***************************************************
consensus_5552#0 GAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTG 473
consensus_5552#1 GAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTG 478
consensus_5552#2 GAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTATACGAAGGTGCTG 189
*********************************************** ************
consensus_5552#0 C-CCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGT 532
consensus_5552#1 C-CCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGT 537
consensus_5552#2 CACCGCTGTCCAAGAACT------------------------------------------ 207
* *** **********
consensus_5552#0 GTACTACGG-TGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCG 591
consensus_5552#1 GTACTACGGGTGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCG 597
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 TGCTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGG 651
consensus_5552#1 TGTTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGG 657
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 AACATCTGCGCTTAATGGCACGTCATATAGCATCGTTTCACGCGTGCACCTACGCCATGC 711
consensus_5552#1 AACATCTGCGCTTAATGGCACGTCATATAG------------------------------ 687
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 GTCTCCGCAACGATGCCCGATTAGCCTCCCTAATCGAAGGCATTGCTCCGCTGGACTTTG 771
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 TGGCAGGAGATAAAACGTTCACCAGCTACGATGTGCTGCTAAAGCTGGGCGCCAACAGGC 831
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 TGTACAAGTATCTGGACGATCATCCCGAGCAGCTGGATAGTGAAGCGTTCAAGCGGGACA 891
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 TGAACAATCTACGCCAGCGGTACGGTACAACGCCGATCAGTCTGATGCAGGATTTACTTC 951
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 GTAAGGATGAGACATTCTCGGTCATACTGCACGGTGACTACAACCGCAACAATGTGCTGT 1011
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 TCCGTACGGATGGCGCTGGCAAGCCGGTCGAGCTAAAGATGTTCGACTTTCAGGAAAATT 1071
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 CCTACGCAACGCCCGTTATCGATCTGACGTTTTATATGTACATGAGCATGACGGAGGAGA 1131
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 TGCGCAACCGGTACTGGGATGCGGTCGTACTGGAATATCATACCGCACTGTTGGAAAGTC 1191
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 TGGCCGCAATTTTAAAAGTACCACAAGAGGATGGTCTGCTGGATCCGTATCGCGCTCGAG 1251
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 CCTTTTTTGGAACATTTCAAGCGTCATGCCATGTACGGGGTGATTGTGACGTTACACTTT 1311
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 CTACCCTGGATGATGTGCCCGGAGGAGGAGTGCGAACAGTTGGCGCACCATTTCGCGCGA 1371
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 GACGTACACTCGAAAGAGCTGGCCCACTGGACGCTGGTGTGCGGTGGAGAGGAGGTAGAC 1431
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 AAAAGGCTGGTGGGAGTGTTGCGACATGCCAGCAGCAAGGGATATTTTGAGATCGTGAAG 1491
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 GAGTAGATCACGGTTTTAGAATGATTTACTTTTTTATATTTTGTTTAATCAATTTATGCA 1551
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 GCAAAGTCAGCTAAAATGATTAATTTTTTGTTAATTTTTTTATCACGTCAAAGTGCATTT 1611
consensus_5552#1 ------------------------------------------------------------
consensus_5552#2 ------------------------------------------------------------
consensus_5552#0 ATTTCAAAACAGTCAATAAATCTAGTAATCATACCATTACATAGGGTAAAAAAAAAAAA 1670
consensus_5552#1 -----------------------------------------------------------
consensus_5552#2 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||