These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 724 fasta sequence [CCGCGGACGCGTGGGCGCGTACACCGGATCTGGCAAATCGCCGGCTTGAGAGTGTTCGAGAGCTGGAATTCATTCGTGGCAGCACCATTGTTTTGCCATCGGCAGTAGAGCGAAGGTGGTGCGCGTCGCGTTTTTGGTGCCGTCGTCGATTTAGCGGTGTGTTTTGTCGTCGACCGATACGGGT---TTGTGTTTGGTTGTTTGTAAGTTGTTCACGGAATTAAA--GTGTGTTCGTGCAGCAAAAACGTGTCACCGTCGTGTGGTGAACAGCAGCAGGCCGGCCCAGCACGGCTTGTGTTTGATTTGCGGCTTTAACCGCACGATTACGTTGTGCGCGCGGAATTGATTGCGGGCCCGTCGGTGTCGGTTGGCAAAAAA-AAAACCAGTCTTCAATCGAGCTAATCGTTTGCACCGCTGGGTGTGAGACGGTGAGGAGTGGAGAGGAGTAAAGAGGGGGGAAACTTTATTAAGCAAACACACCAAACAGGACAGGAGAACGAGCAGCCGATGAAGAAAAACGATCAAGCTGAATAAACAAAAAACCTTCTCGAACGCTCCGGTTGGAACAACTGCGGCACAGTCCAATGTAAAGGCATAGACACAGAAAGAGAACGAGAGAAGACTGTCCGCGGCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGG] [+] EMBL BM598229 [CCGCGGACGCGTGGGCGCGTACACCGGATCTGGCAAATCGCCGGCTTGAGAGTGTTCGAGAGCTGGAATTCATTCGTGGCAGCACCATTGTTTTGCCATCGGCAGTAGAGCGAAGGTGGTGCGCGTCGCGTTTTTGGTGCCGTCGTCGATTTAGCGGTGTGTTTTGTCGTCGACCGATACGGGT TTGTGTTTGGTTGTTTGTAAGTTGTTCACGGAATTAAA GTGTGTTCGTGCAGCAAAAACGTGTCACCGTCGTGTGGTGAACAGCAGCAGGCCGGCCCAGCACGGCTTGTGTTTGATTTGCGGCTTTAACCGCACGATTACGTTGTGCGCGCGGAATTGATTGCGGGCCCGTCGGTGTCGGTTGGCAAAAAA AAAACCAGTCTTCAATCGAGCTAATCGTTTGCACCGCTGGGTGTGAGACGGTGAGGAGTGGAGAGGAGTAAAGAGGGGGGAAACTTTATTAAGCAAACACACC ] [+] EMBL BM581698 [ ccGCAGCACCATTGTTTTGCCATCGGCAGTAGAGCGAAGGTGGTGCGCGTCGCGTTTTTGGTGCCGTCGTCGATTTAGCGGTGTGTTTTGTCGTCGACCGATACGGGTTGGTTGTGTTTGGTTGTTTGTAAGTTGTTCACGGAATTAAAGTGTGTGTTCGTGCAGCAAAAACGTGTCACCGTCGAGTGGTGAACAGCAGCGGGCCGGCCCAGCACGGCTTGTGTTTGATTTGCGGCTTTAACCGCACGATTACGTTGTGCGCGCGGAATTGATTGCGGGCCCGTCGGTGTCGGTTGGCAAAAAAGAAAACCAGTCTTCAATCGAGCTAATCGTTTGCACCGCTGGGTGTGAGACGGTGAGGAGTGGAGACGAGTAAAGAGGGGGGAAACTTTGTTAAGCAAATACACCAAACAGGACAGGAGAACGAGCAGCCGATGAAGAAAAACGATCAAGCTGAATAAACAAAAAACCTTCTCGAACGCTCCGGTTGGAACAACTGCGGCACAGTCCAATGTAAAGGCATAGACACAGAAAGAGAACGAGAGAAGACTGTCCGCGGCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGG] consensusID : consensus_5554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [GGCAGAATTCGGCACGATGGTAATAGACACAGAAAGAGAACGAGANNAAGACTGCCCGTGGCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGGTGGAAACTTTGAACAGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGTTTGACCGGACAAACTCTGTCGGTGAACACCGCGGGTGTACGTTTCGCTGTGTCGCCGCCCCCCAATCTGTCCGTGAAAGGAGTTGAACACTCTCCCTCCCAGAGCGGAGATTTCCAATTGCTCCGATATATAGCGGAAGGTGCTGGTTTCGGAAAAAGAAAACAATAACACAAAAAGGGTGAAGGAAGGGAAGTGAAATAAGTTTCGTTATTAGGCAAGGCCAACAAGCANACATCTGCGGCAGCCGGAGNTGGGCATTTGCCGATTNGACCACTTGGTCNTGATGGATTCGGTATNTGGTAACGGTTGGTGCAACAGAGGCCAANGNCGCGAGGGAAAAACAAAAACGGGGNGGGAAACAANAAAGGGGA] [+] EMBL BX468912 [GGCAGAATTCGGCACGATGGTAATAGACACAGAAAGAGAACGAGANNAAGACTGCCCGTGGCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGGTGGAAACTTTGAACAGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGTTTGACCGGACAAACTCTGTCGGTGAACACCGCGGGTGTACGTTTCGCTGTGTCGCCGCCCCCCAATCTGTCCGTGAAAGGAGTTGAACACTCTCCCTCCCAGAGCGGAGATTTCCAATTGCTCCGATATATAGCGGAAGGTGCTGGTTTCGGAAAAAGAAAACAATAACACAAAAAGGGTGAAGGAAGGGAAGTGAAATAAGTTTCGTTATTAGGCAAGGCCAACAAGCANACATCTGCGGCAGCCGGAGNTGGGCATTTGCCGATTNGACCACTTGGTCNTGATGGATTCGGTATNTGGTAACGGTTGGTGCAACAGAGGCCAANGNCGCGAGGGAAAAACAAAAACGGGGNGGGAAACAANAAAGGGGA] consensusID : consensus_5554#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [TTTGAACAGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGATTGACCGGACAAACTCTGTCGGTGAACACCGCGGGTGTACGTTTCGCTGTGCCGCCGCCCCCCAATCTGTCCGTGAAAGGAGTTAACCACTCTCCCTCCCAGAGCGGAGATTTCCAATCGCTCCGATATATAGCGGAAGGAGCTGGTTTCGGAAAAAACAAAACACAAAAAGGGTGTAGGAAGGAAGTGAAATAATTTCGTTATTAGCAGCAAGAACACACACAGCCGCGGCGCGAGCGGCTTGCGTTTTCATGTCTGTGTTCGTTTGTAAGTGGTGAAAAGCAACGGGGGAAAAAAACGGTGGAAAAGAGCAAAAATTTAATCAAAAAATCGGAGCAAATTTTTTGTTCTTTTGCTCTCTCTCTACAGTTTGTTGATTGATAAATTGATTGATCGTTAGTGGTTAAGTGTTGGATAGGCGCCGCCAATCCGAGTGCGTGTGTGTGTTGAGTTTTTTTTTATGTGTGTGCAAGCGGCGCACGAT] [+] EMBL BX625036 [TTTGAACAGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGATTGACCGGACAAACTCTGTCGGTGAACACCGCGGGTGTACGTTTCGCTGTGCCGCCGCCCCCCAATCTGTCCGTGAAAGGAGTTAACCACTCTCCCTCCCAGAGCGGAGATTTCCAATCGCTCCGATATATAGCGGAAGGAGCTGGTTTCGGAAAAAACAAAACACAAAAAGGGTGTAGGAAGGAAGTGAAATAATTTCGTTATTAGCAGCAAGAACACACACAGCCGCGGCGCGAGCGGCTTGCGTTTTCATGTCTGTGTTCGTTTGTAAGTGGTGAAAAGCAACGGGGGAAAAAAACGGTGGAAAAGAGCAAAAATTTAATCAAAAAATCGGAGCAAATTTTTTGTTCTTTTGCTCTCTCTCTACAGTTTGTTGATTGATAAATTGATTGATCGTTAGTGGTTAAGTGTTGGATAGGCGCCGCCAATCCGAGTGCGTGTGTGTGTTGAGTTTTTTTTTATGTGTGTGCAAGCGGCGCACGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5554#1 ------------------------------------------------------------ consensus_5554#2 ------------------------------------------------------------ consensus_5554#0 CCGCGGACGCGTGGGCGCGTACACCGGATCTGGCAAATCGCCGGCTTGAGAGTGTTCGAG 60 consensus_5554#1 ----------GGCAGAATTCGGCACGATGGTAATAGACACAGAAAGAGAACGAGANNAAG 50 consensus_5554#2 ------------------------------------------------------------ consensus_5554#0 AGCTGGAATTCATTCGTGGCAGCACCATTGTTTTGCCATCGGCAGTAGAGCGAAGGTGGT 120 consensus_5554#1 ACTGCCCGTGGCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAG 110 consensus_5554#2 ------------------------------------------------------------ consensus_5554#0 GCGCGTCGCGTTTTTGGTGCCGTCGTCGATTTAGCGGTGTGTTTTGTCGTCGACCGATAC 180 consensus_5554#1 GAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGGTGGAAACTTTGAAC 170 consensus_5554#2 -----------------------------------------------------TTTGAAC 7 consensus_5554#0 GGGT-TTGTGTTTGGTTGTTTGTAAGTTGTT--CACGGAATTAAAGTGTG---TTCGTGC 234 ** * * consensus_5554#1 AGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGTTTGACCGGACAAACTCTGTC 230 consensus_5554#2 AGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGATTGACCGGACAAACTCTGTC 67 consensus_5554#0 AGCAAAAACGTGTCACCGTCGTGTGGTGAACAGCAGCAGGCCGGCCCAGCACGGCTTGTG 294 ** ** * * *** * * *** *** * * * ** ** *** consensus_5554#1 GGTGAAC----------ACCGCGGGTGTACGTTTCGC-TGTGTCGCCGCCCCCCAATCTG 279 consensus_5554#2 GGTGAAC----------ACCGCGGGTGTACGTTTCGC-TGTGCCGCCGCCCCCCAATCTG 116 consensus_5554#0 TTTGATTTGCGGCTTTAACCGCACGATTACGTTGTGCGCGCGGAATTGATTGCGGGCCCG 354 *** ***** * ****** ** * * * * * * consensus_5554#1 TCCGTGAAAGG-AGTTGAACACTCTCCCTCCCAGAGCGGAGATTTCCAATTGCTCCGATA 338 consensus_5554#2 TCCGTGAAAGG-AGTTAACCACTCTCCCTCCCAGAGCGGAGATTTCCAATCGCTCCGATA 175 consensus_5554#0 TCGGTGTCGGTTGGCAAAAAAAAAACCAGTCTTCAATCGAGCTAATCGTTTGCACCGCTG 414 ** *** * * * * ** * * *** * * * ** *** * consensus_5554#1 TATAGCGGAAGGTGCTGGTTTCGGAA----AAAGA----------------AAACAATAA 378 consensus_5554#2 TATAGCGGAAGGAGCTGGTTTCGGAA----AAAAC----------------AAA-----A 210 consensus_5554#0 GGTGTGAGACGGTGAGGAGTGGAGAGGAGTAAAGAGGGGGGAAACTTTATTAAGCAAACA 474 * ** ** * * * ** *** ** * consensus_5554#1 CACAAAAAGGGT--GAAGGAAGGGAAGTGAAATAAGTTTCGTTATTAGGCAAGGCCAACA 436 consensus_5554#2 CACAAAAAGGGT--GTAGGAAGG-AAGTGAAATAA-TTTCGTTATTAGC---AGCAAGAA 263 consensus_5554#0 CACCAAACAGGACAGGAGAACGAGCAGCCGATGAAGAAAAACGATCAAGCTGAATAAACA 534 *** *** ** * ** * * ** * ** ** * * * consensus_5554#1 AGCANACATCTGCGGCAGCCGGAGNTGGGCATTTGCCGATTNGA--CCACTTGGTCNTGA 494 consensus_5554#2 CACACACAGCCGCGGC-GCGAGCGGCTTGCGTTTTCATGTCTGTGTTCGTTTGTAAGTGG 322 consensus_5554#0 AAAAACCTTCTCGAACGCTCCGGTTGGAACAACTGCGGCACAGT--CCAATGTAAAGGCA 592 * * * * * * * * * * * consensus_5554#1 TGGATTCGGTATNTGGTAACGGTTGGTGCAACAGAGGCCAANGNCGCGAGGGAAAAACAA 554 consensus_5554#2 TGAAAAGCAACGGGGGAAAAAAACGGTGGAAAAGAG--CAAAAATTTAATCAAAAAATCG 380 consensus_5554#0 TAGACACAGAAAGAGAACGAGAGAAGACTGTCCGCGGCCAAAACTAAAGATACAAACTGA 652 * * * * * * *** *** consensus_5554#1 AAACGGGGNGGGAAAC--AANAAAGGGGA------------------------------- 581 consensus_5554#2 GAGCAAATTTTTTGTT--CTTTTGCTCTCTCTCTACAGTTTGTTGATTGATAAATTGATT 438 consensus_5554#0 ACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGA 712 * consensus_5554#1 ------------------------------------------------------------ consensus_5554#2 GATCGTTAGTGGTTAAGTGTTGGATAGGCGCCGCCAATCCGAGTGCGTGTGTGTGTTGAG 498 consensus_5554#0 AAGCGATTGTGG------------------------------------------------ 724 consensus_5554#1 --------------------------------- consensus_5554#2 TTTTTTTTTATGTGTGTGCAAGCGGCGCACGAT 531 consensus_5554#0 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||