cluster # 5558

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Anopheles gambiae
cluster # 5558 cluster # 5558 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5558#0 length = 921 sequences # 1

consensus_5558#1 length = 674 sequences # 2
consensus_5558#2 length = 633 sequences # 1

consensusID : consensus_5558#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 921
fasta sequence

                              [GCAGAATCGCNCACGAGGGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCAGTGCGCTGGGTTTGTGCTGGTGTACGATCTGTCCGGCATTACGATGGGCATGTTGGGGCTGGTGACGCTGAACGATATACGCGATCTGGCGACGTACCTGAACAATGCGGTGCCGATGCGCATCCAGGAGGCTACACTTTGTCAACACGGCCGGAGCTTTGGCGGCTGGAAGATCGCGAAGAGCTACAACGCCTGGGGCTGGATGAACGAGGAANGCTTCGCAATCGTATCATGTGTCATCGCAGCCTGGAAGATCTGCGACAAAGAAGGTGACAAGCGGGTCATACCCCAGGAGTACGGTGAAAGATCCGCCAAGGAAGGACCNAGCAATTTNGGCCCCCGAGGTTACAAAGACAAGAGCCTGGTCGGCNNATTTTTACCCGGTTCCCCAAGGTTGGGTTGGCCCTTGGGCACGNACGATTGGGACNTANCAGACGGTTTGGGNGCGCGAANATATGGGAGCAGGCTNGGANGAAAGANNCTCANACACG]

[+] EMBL BX467699             [GCAGAATCGCNCACGAGGGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCAGTGCGCTGGGTTTGTGCTGGTGTACGATCTGTCCGGCATTACGATGGGCATGTTGGGGCTGGTGACGCTGAACGATATACGCGATCTGGCGACGTACCTGAACAATGCGGTGCCGATGCGCATCCAGGAGGCTACACTTTGTCAACACGGCCGGAGCTTTGGCGGCTGGAAGATCGCGAAGAGCTACAACGCCTGGGGCTGGATGAACGAGGAANGCTTCGCAATCGTATCATGTGTCATCGCAGCCTGGAAGATCTGCGACAAAGAAGGTGACAAGCGGGTCATACCCCAGGAGTACGGTGAAAGATCCGCCAAGGAAGGACCNAGCAATTTNGGCCCCCGAGGTTACAAAGACAAGAGCCTGGTCGGCNNATTTTTACCCGGTTCCCCAAGGTTGGGTTGGCCCTTGGGCACGNACGATTGGGACNTANCAGACGGTTTGGGNGCGCGAANATATGGGAGCAGGCTNGGANGAAAGANNCTCANACACG]




>consensus_5558#0
GCAGAATCGCNCACGAGGGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCC
TGACCCAGCTGCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACG
CACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACA
TGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACA
TTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGA
AGGATGCACGTGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGT
ACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATG
CGTCGGTGCAGTGCGCTGGGTTTGTGCTGGTGTACGATCTGTCCGGCATTACGATGGGCA
TGTTGGGGCTGGTGACGCTGAACGATATACGCGATCTGGCGACGTACCTGAACAATGCGG
TGCCGATGCGCATCCAGGAGGCTACACTTTGTCAACACGGCCGGAGCTTTGGCGGCTGGA
AGATCGCGAAGAGCTACAACGCCTGGGGCTGGATGAACGAGGAANGCTTCGCAATCGTAT
CATGTGTCATCGCAGCCTGGAAGATCTGCGACAAAGAAGGTGACAAGCGGGTCATACCCC
AGGAGTACGGTGAAAGATCCGCCAAGGAAGGACCNAGCAATTTNGGCCCCCGAGGTTACA
AAGACAAGAGCCTGGTCGGCNNATTTTTACCCGGTTCCCCAAGGTTGGGTTGGCCCTTGG
GCACGNACGATTGGGACNTANCAGACGGTTTGGGNGCGCGAANATATGGGAGCAGGCTNG
GANGAAAGANNCTCANACACG

consensusID : consensus_5558#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 674
fasta sequence

                              [CCGGATCGGTCGACCGGTGCGGTTGGGACTCTCCCGGTGAACAGTGTGTTTGTGCGTTTGTGTGTGCGTGTGAGTGATTGTTCTTTCATTTGTGTTTGTGTGTATCAGTACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGATGCTTCCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCGAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGATATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGTCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGATGATGATGCGTCGGTGCAGTGCGCTGGGTTTGTGCTGGTGTACGA]

[+] EMBL BM637076             [CCGGATCGGTCGACCGGTGCGGTTGGGACTCTCCCGGTGAACAGTGTGTTTGTGCGTTTGTGTGTGCGTGTGAGTGATTGTTCTTTCATTTGTGTTTGTGTGTATCAGTACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGATGCTTCCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCGAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGATATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGTCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGA                                                                                                           ]
[+] EMBL BM589701             [                                                                                                                                                          CCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCGAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGATATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGTCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGATGATGATGCGTCGGTGCAGTGCGCTGGGTTTGTGCTGGTGTACGA]




>consensus_5558#1
CCGGATCGGTCGACCGGTGCGGTTGGGACTCTCCCGGTGAACAGTGTGTTTGTGCGTTTG
TGTGTGCGTGTGAGTGATTGTTCTTTCATTTGTGTTTGTGTGTATCAGTACTAGTAACAT
CCCAGTCATGCCCAGTGACGAGCTAGTGATGCTTCCGGCCCCGAACCTGGACAAAGCGCC
CGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGA
CTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGAT
CGCGAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCT
GCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTG
CCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGATATTGAGGATCGCGAGATGTGTGG
GCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGTCGGACGGT
GATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCG
GATGCATATGCTGGTGGGCGAAACGCTGATGATGATGCGTCGGTGCAGTGCGCTGGGTTT
GTGCTGGTGTACGA

consensusID : consensus_5558#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [CCGCTCCCGGTGAACAGTGTGTTTGTGCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGACTGATTGTTCTTTCATTTGTGTTTGGGGGTATCTGTACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGGTGCTTCCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCA]

[+] EMBL BM582026             [CCGCTCCCGGTGAACAGTGTGTTTGTGCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGACTGATTGTTCTTTCATTTGTGTTTGGGGGTATCTGTACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGGTGCTTCCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCA]




>consensus_5558#2
CCGCTCCCGGTGAACAGTGTGTTTGTGCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGACT
GATTGTTCTTTCATTTGTGTTTGGGGGTATCTGTACTAGTAACATCCCAGTCATGCCCAG
TGACGAGCTAGTGGTGCTTCCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAA
CGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAA
TGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCCAAGCATCCGAA
CATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTA
CTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCC
GCACTGGTTCAAGCGGCTAGACATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGG
CTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGCCGGACGGTGATTTTCGGCGATGC
TGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGT
GGGCGAAACGCTGTACGATGATGCGTCGGTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5558#1      CCGGATCGGTCGACCGGTGCGGTTGGGACTCTCCCGGTGAACAGTGTGTTTGTGCGTTTG 60
consensus_5558#2      ---------------------------CCGCTCCCGGTGAACAGTGTGTTTGTGCGTTTG 33
consensus_5558#0      ------------------------------------------------------------
                                                                                  

consensus_5558#1      TGTGTGCGTGTGAG------------TGATTGTTCTTTCATTTGTGTTTGTGTGTATCAG 108
consensus_5558#2      TGTGTGTGTGTGTGTGTGTGTGTGACTGATTGTTCTTTCATTTGTGTTTGGGGGTATCTG 93
consensus_5558#0      ------------------------------------------------------------
                                                                                  

consensus_5558#1      TACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGATGCTTCCGGCCCCGAACCT 168
consensus_5558#2      TACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGGTGCTTCCGGCCCCGAACCT 153
consensus_5558#0      ------------------------------------------------------------
                                                                                  

consensus_5558#1      GGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCA 228
consensus_5558#2      GGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCA 213
consensus_5558#0      ------------------------------------------------GCAGAATCGCNC 12
                                                                       **   **    

consensus_5558#1      ATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCT 288
consensus_5558#2      ATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCT 273
consensus_5558#0      ACGAGG--GGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCT 70
                      *  **   ****************************************************

consensus_5558#1      GCGTGACTGGATCGCGAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCT 348
consensus_5558#2      GCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCT 333
consensus_5558#0      GCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCT 130
                      *************** ********************************************

consensus_5558#1      GTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCG 408
consensus_5558#2      GTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCG 393
consensus_5558#0      GTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCG 190
                      ************************************************************

consensus_5558#1      CTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGATATTGAGGATCG 468
consensus_5558#2      CTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCG 453
consensus_5558#0      CTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCG 250
                      ************************************************ ***********

consensus_5558#1      CGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACG 528
consensus_5558#2      CGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACG 513
consensus_5558#0      CGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACG 310
                      ************************************************************

consensus_5558#1      TGGTCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGG 588
consensus_5558#2      TGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGG 573
consensus_5558#0      TGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGG 370
                      *** ********************************************************

consensus_5558#1      GCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTG-ATGATGATGCGTCGGTGCA 647
consensus_5558#2      GCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCA 633
consensus_5558#0      GCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCA 430
                      **************************************** * *****************

consensus_5558#1      GTGCGCTGGGTTTGTGCTGGTGTACGA--------------------------------- 674
consensus_5558#2      ------------------------------------------------------------
consensus_5558#0      GTGCGCTGGGTTTGTGCTGGTGTACGATCTGTCCGGCATTACGATGGGCATGTTGGGGCT 490
                                                                                  

consensus_5558#1      ------------------------------------------------------------
consensus_5558#2      ------------------------------------------------------------
consensus_5558#0      GGTGACGCTGAACGATATACGCGATCTGGCGACGTACCTGAACAATGCGGTGCCGATGCG 550
                                                                                  

consensus_5558#1      ------------------------------------------------------------
consensus_5558#2      ------------------------------------------------------------
consensus_5558#0      CATCCAGGAGGCTACACTTTGTCAACACGGCCGGAGCTTTGGCGGCTGGAAGATCGCGAA 610
                                                                                  

consensus_5558#1      ------------------------------------------------------------
consensus_5558#2      ------------------------------------------------------------
consensus_5558#0      GAGCTACAACGCCTGGGGCTGGATGAACGAGGAANGCTTCGCAATCGTATCATGTGTCAT 670
                                                                                  

consensus_5558#1      ------------------------------------------------------------
consensus_5558#2      ------------------------------------------------------------
consensus_5558#0      CGCAGCCTGGAAGATCTGCGACAAAGAAGGTGACAAGCGGGTCATACCCCAGGAGTACGG 730
                                                                                  

consensus_5558#1      ------------------------------------------------------------
consensus_5558#2      ------------------------------------------------------------
consensus_5558#0      TGAAAGATCCGCCAAGGAAGGACCNAGCAATTTNGGCCCCCGAGGTTACAAAGACAAGAG 790
                                                                                  

consensus_5558#1      ------------------------------------------------------------
consensus_5558#2      ------------------------------------------------------------
consensus_5558#0      CCTGGTCGGCNNATTTTTACCCGGTTCCCCAAGGTTGGGTTGGCCCTTGGGCACGNACGA 850
                                                                                  

consensus_5558#1      ------------------------------------------------------------
consensus_5558#2      ------------------------------------------------------------
consensus_5558#0      TTGGGACNTANCAGACGGTTTGGGNGCGCGAANATATGGGAGCAGGCTNGGANGAAAGAN 910
                                                                                  

consensus_5558#1      -----------
consensus_5558#2      -----------
consensus_5558#0      NCTCANACACG 921