cluster # 5563

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Anopheles gambiae
cluster # 5563 cluster # 5563 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5563#0 length = 1159 sequences # 3

consensus_5563#1 length = 613 sequences # 1

consensusID : consensus_5563#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1159
fasta sequence

                              [GTGTAGGGACATTTTTAAAATGATTTAAGTAATTAAAGAAACGAGCAAACGAGATGAAGCGGAAAAAATAAGAAAAAAAGTGCAAAACGTACACACACATTACCTTTTGCCAAAACAAAATAAAATAAATGAAAAAAACAAACTAGACAACAAAACTACGAAATGGGTAGCAAAAATTGTCAAAATAGTAGGTCTAGTTGAAGGAAGAAGGCAAACATAACAAAAAAAAACTTCCCCTGCTCCTCCCTCCCCTTGTGAATTGTATGTGTTAATTTAACTGTGTAGCATTTACCGAACACAATTACATGTTTGCATCATGTTTGCAACAAAAAGTATAAACAATATTATCAAATAATATACACACGCACAGAGAGAGAGAGAAAGAGAACTAGAGAAAAAAAAACAGAAAAAATGGATAGGATGTAAAGCAGAATTGGAAACTTCCAGGCACAAACACTCACACTCACCGTTTACATAATCGTGAGCAAGTGCGTGTGTGTATGAGAAGGAAAAAAAACTGAACTTAGAAAGAAAGAAACAAAAGAAATTAAGATAAAACAAAGGAGAAGAAAGAAAAAAACTCGAACAAACAAAAGAAGTTAATAAAACAATGGAGTGTAAAGGATGAGAAAACCAAATAATATCAAAAACACAGATCCCAACGTATGTTGTGTATGTATGTGTCTGTGTGTGTGTGTTTGTGCGTATGTATGTGCGGCGANGTGTGTAAAACACTGAAANTTTTGTTACAACATTGCCTGTTTAGACCCGCGCGGTGTCGCCAAGTTGGAAAGTACACGAGATAAGAGAAGCAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAATAGAAGAATAAGACCCCGAGAACGCGAAACGTTAACTTAAGCAAAAGAAAGATTAATTCCAGCGTGAACAGGCGAAAGTGATGCGTTTGGGTTGAAGGAAAAACAAACAAAAAATACAAAACCACTCAAACGAACGATAAGGATCGTTGAAGATGCAAAAAAAAACAAAGCAGTAGCGAAACAGAAGGAAAAAGAGGGAGAAAACGGAACAAACAGAAGAAAAAAAAACGTGTATATAACACCGGGTGTTACAAACATTGCAACGTGTTACAAAATAAAAAAATAAAAAAAAAACAAGAAAACATA]

[+] EMBL BX627908             [GTGTAGGGACATTTTTAAAATGATTTAAGTAATTAAAGAAACGAGCAAACGAGATGAAGCGGAAAAAATAAGAAAAAAAGTGCAAAACGTACACACACATTACCTTTTGCCAAAACAAAATAAAATAAATGAAAAAAACAAACTAGACAACAAAACTACGAAATGGGTAGCAAAAATTGTCAAAATAGTAGGTCTAGTTGAAGGAAGAAGGCAAACATAACAAAAAAAAACTTCCCCTGCTCCTCCCTCCCCTTGTGAATTGTATGTGTTAATTTAACTGTGTAGCATTTACCGAACACAATTACATGTTTGCATCATGTTTGCAACAAAAAGTATAAACAATATTATCAAATAATATACACACGCACAGAGAGAGAGAGAAAGAGAACTAGAGAAAAAAAAACAGAAAAAATGGATAGGATGTAAAGCAGAATTGGAAACTTCCAGGCACAAACACTCACACTCACCGTTTACATAATCGTGAGCAAGTGCGTGTGTGTATGAGAAGGAAAAAAAACTGAACTTAGAAAGAAAGAAACAAAAGAAATTAAGATAAAACAAAGGAGAAGAAAGAAAAAAACTCGAACAAACAAAAGAAGTTAATAAAACAATGGAGTGTAAAGGATGAGAAAACCAAATAATATCAAAAACACAGATCCCAACGTATGTTGTGTATGTATGTGTCTGTGTGTGTGTGTTTGTGCGTATGTATGTGCGGCGANGTGTGTAAAACACTGAAANTTTTGTTACAACATTGCCT                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX608389             [                                                                                                                                                                                      AAATAGTAGGTCTAGTTGAAGGAAGAAGGCAAACATAACAAAAAAAAACTTCCCCTGCTCCTCCCTCCCCTTGTGAATTGTATGTGTTAATTTAACTGTGTAGCATTTACCGAACACAATTACATGTTTGCATCATGTTTGCAACAAAAAGTATAAACAATATTATCAAATAATATACACACGCACAGAGAGAGAGAGAAAGAGAACTAGAGAAAAAAAAACAGAAAAAATGGATAGGATGTAAAGCAGAATTGGAAACTTCCAGGCACAAACACTCACACTCACCGTTTACATAATCGTGAGCAAGTGCGTGTGTGTATGAGAAGGAAAAAAAACTGAACTTAGAAAGAAAGAAACAAAAGAAATTAAGATAAAACAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX617081             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAGAAAGAAACAAAAGAAATTAAGATAAAACAAAGGAGAAGAAAGAAAAAAACTCGAACAAACAAAAGAAGTTAATAAAACAATGGAGTGTAAAGGATGAGAAAACAAAATAATATCAAAAACACAGATCCCAACGTATGTTGTGTATGTATGTGTCTGTGTGTGTGTGTTTGTGCGTATGTATGTGCGGCGAGGTGTGTAAAACACTGAAACATTTGTTACAACATTGCCTGTTTAGACCCGCGCGGTGTCGCCAAGTTGGAAAGTACACGAGATAAGAGAAGCAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAATAGAAGAATAAGACCCCGAGAACGCGAAACGTTAACTTAAGCAAAAGAAAGATTAATTCCAGCGTGAACAGGCGAAAGTGATGCGTTTGGGTTGAAGGAAAAACAAACAAAAAATACAAAACCACTCAAACGAACGATAAGGATCGTTGAAGATGCAAAAAAAAACAAAGCAGTAGCGAAACAGAAGGAAAAAGAGGGAGAAAACGGAACAAACAGAAGAAAAAAAAACGTGTATATAACACCGGGTGTTACAAACATTGCAACGTGTTACAAAATAAAAAAATAAAAAAAAAACAAGAAAACATA]




>consensus_5563#0
GTGTAGGGACATTTTTAAAATGATTTAAGTAATTAAAGAAACGAGCAAACGAGATGAAGC
GGAAAAAATAAGAAAAAAAGTGCAAAACGTACACACACATTACCTTTTGCCAAAACAAAA
TAAAATAAATGAAAAAAACAAACTAGACAACAAAACTACGAAATGGGTAGCAAAAATTGT
CAAAATAGTAGGTCTAGTTGAAGGAAGAAGGCAAACATAACAAAAAAAAACTTCCCCTGC
TCCTCCCTCCCCTTGTGAATTGTATGTGTTAATTTAACTGTGTAGCATTTACCGAACACA
ATTACATGTTTGCATCATGTTTGCAACAAAAAGTATAAACAATATTATCAAATAATATAC
ACACGCACAGAGAGAGAGAGAAAGAGAACTAGAGAAAAAAAAACAGAAAAAATGGATAGG
ATGTAAAGCAGAATTGGAAACTTCCAGGCACAAACACTCACACTCACCGTTTACATAATC
GTGAGCAAGTGCGTGTGTGTATGAGAAGGAAAAAAAACTGAACTTAGAAAGAAAGAAACA
AAAGAAATTAAGATAAAACAAAGGAGAAGAAAGAAAAAAACTCGAACAAACAAAAGAAGT
TAATAAAACAATGGAGTGTAAAGGATGAGAAAACCAAATAATATCAAAAACACAGATCCC
AACGTATGTTGTGTATGTATGTGTCTGTGTGTGTGTGTTTGTGCGTATGTATGTGCGGCG
ANGTGTGTAAAACACTGAAANTTTTGTTACAACATTGCCTGTTTAGACCCGCGCGGTGTC
GCCAAGTTGGAAAGTACACGAGATAAGAGAAGCAGAAGAAAAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAAAATAGAAGAATAAGACCCCGAGAACGCGAAACGTTAACTTAAGCAAAAG
AAAGATTAATTCCAGCGTGAACAGGCGAAAGTGATGCGTTTGGGTTGAAGGAAAAACAAA
CAAAAAATACAAAACCACTCAAACGAACGATAAGGATCGTTGAAGATGCAAAAAAAAACA
AAGCAGTAGCGAAACAGAAGGAAAAAGAGGGAGAAAACGGAACAAACAGAAGAAAAAAAA
ACGTGTATATAACACCGGGTGTTACAAACATTGCAACGTGTTACAAAATAAAAAAATAAA
AAAAAAACAAGAAAACATA

consensusID : consensus_5563#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [CCGCGGACGCGTGGGGAGCAAACGAGATGATGCAAAAAGTGCAAAACGTACACACACATTACCTTTTGCCAAAACAAAATAAAATAAATGAAAAACAAACTAGACAACAAAACTACACGCTAAAGGGTAGCGAAAACTGTCAAAATAGTAGGTCTAGTTGAAGGAAGAAGGCAAACATAACAAAAAAAAACTTCCCCTGCTCCTCCCTCCCCTTGTGAATTGTATGTGTTAATTTAACTGTGTAGCATTTACCGAACACAATTACATGTTTGCATCATGTTTGCAACAAAAAGTATAAACAATATTATCAAATAATATACACACGCACAGAGAGAGAGAGAGAGAGAGAAAGAGAACTAGAGAAAAAAAACAGAAAAAATGGATAGGATGTGAAGCAGAATTGGAAACTTCCAGGCACAAACACTCACACTCATTGTTAACATAATCGTGAGCAAGTGCGTGTGTGTATGAGAAGGAAAGAGAAACTAAACTTAGAAAGAAAGATACAAAAGAAAATAAGATAAAACAAAGGAGAAGAAAGAAAAAAACTCGAACAAACAAAAGAAGTTAATAAAACAATGGAGTGTAAAGGATGAGAAAACAAAATAATATC]

[+] EMBL BM582707             [CCGCGGACGCGTGGGGAGCAAACGAGATGATGCAAAAAGTGCAAAACGTACACACACATTACCTTTTGCCAAAACAAAATAAAATAAATGAAAAACAAACTAGACAACAAAACTACACGCTAAAGGGTAGCGAAAACTGTCAAAATAGTAGGTCTAGTTGAAGGAAGAAGGCAAACATAACAAAAAAAAACTTCCCCTGCTCCTCCCTCCCCTTGTGAATTGTATGTGTTAATTTAACTGTGTAGCATTTACCGAACACAATTACATGTTTGCATCATGTTTGCAACAAAAAGTATAAACAATATTATCAAATAATATACACACGCACAGAGAGAGAGAGAGAGAGAGAAAGAGAACTAGAGAAAAAAAACAGAAAAAATGGATAGGATGTGAAGCAGAATTGGAAACTTCCAGGCACAAACACTCACACTCATTGTTAACATAATCGTGAGCAAGTGCGTGTGTGTATGAGAAGGAAAGAGAAACTAAACTTAGAAAGAAAGATACAAAAGAAAATAAGATAAAACAAAGGAGAAGAAAGAAAAAAACTCGAACAAACAAAAGAAGTTAATAAAACAATGGAGTGTAAAGGATGAGAAAACAAAATAATATC]




>consensus_5563#1
CCGCGGACGCGTGGGGAGCAAACGAGATGATGCAAAAAGTGCAAAACGTACACACACATT
ACCTTTTGCCAAAACAAAATAAAATAAATGAAAAACAAACTAGACAACAAAACTACACGC
TAAAGGGTAGCGAAAACTGTCAAAATAGTAGGTCTAGTTGAAGGAAGAAGGCAAACATAA
CAAAAAAAAACTTCCCCTGCTCCTCCCTCCCCTTGTGAATTGTATGTGTTAATTTAACTG
TGTAGCATTTACCGAACACAATTACATGTTTGCATCATGTTTGCAACAAAAAGTATAAAC
AATATTATCAAATAATATACACACGCACAGAGAGAGAGAGAGAGAGAGAAAGAGAACTAG
AGAAAAAAAACAGAAAAAATGGATAGGATGTGAAGCAGAATTGGAAACTTCCAGGCACAA
ACACTCACACTCATTGTTAACATAATCGTGAGCAAGTGCGTGTGTGTATGAGAAGGAAAG
AGAAACTAAACTTAGAAAGAAAGATACAAAAGAAAATAAGATAAAACAAAGGAGAAGAAA
GAAAAAAACTCGAACAAACAAAAGAAGTTAATAAAACAATGGAGTGTAAAGGATGAGAAA
ACAAAATAATATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5563#0      GTGTAGGGACATTTTTAAAATGATTTAAGTAATTAAAGAAACGAGCAAACGAGATGAAGC 60
consensus_5563#1      ----------------------------------------CCGCGGACGCGTGG-GGAGC 19
                                                               ** * *  ** *  * ***

consensus_5563#0      GGAAAAAATAAGAAAAAAAGTGCAAAACGTACACACACATTACCTTTTGCCAAAACAAAA 120
consensus_5563#1      AAACGAGATGATGCAAAAAGTGCAAAACGTACACACACATTACCTTTTGCCAAAACAAAA 79
                        *  * ** *   **********************************************

consensus_5563#0      TAAAATAAATGAAAAAAACAAACTAGACAACAAAACTACGA---AATGGGTAGCAAAAAT 177
consensus_5563#1      TAAAATAAATGAAAA--ACAAACTAGACAACAAAACTACACGCTAAAGGGTAGCGAAAAC 137
                      ***************  **********************     ** ******* **** 

consensus_5563#0      TGTCAAAATAGTAGGTCTAGTTGAAGGAAGAAGGCAAACATAACAAAAAAAAACTTCCCC 237
consensus_5563#1      TGTCAAAATAGTAGGTCTAGTTGAAGGAAGAAGGCAAACATAACAAAAAAAAACTTCCCC 197
                      ************************************************************

consensus_5563#0      TGCTCCTCCCTCCCCTTGTGAATTGTATGTGTTAATTTAACTGTGTAGCATTTACCGAAC 297
consensus_5563#1      TGCTCCTCCCTCCCCTTGTGAATTGTATGTGTTAATTTAACTGTGTAGCATTTACCGAAC 257
                      ************************************************************

consensus_5563#0      ACAATTACATGTTTGCATCATGTTTGCAACAAAAAGTATAAACAATATTATCAAATAATA 357
consensus_5563#1      ACAATTACATGTTTGCATCATGTTTGCAACAAAAAGTATAAACAATATTATCAAATAATA 317
                      ************************************************************

consensus_5563#0      TACACACGCACAGAGAGAGAGAGAAAGAGAACTAGAGAA-------AAAAAAACAGAAAA 410
consensus_5563#1      TACACACGCACAGAGAGAGAGAGAGAGAGAGAAAGAGAACTAGAGAAAAAAAACAGAAAA 377
                      ************************ *****   ******       **************

consensus_5563#0      AATGGATAGGATGTAAAGCAGAATTGGAAACTTCCAGGCACAAACACTCACACTCACCGT 470
consensus_5563#1      AATGGATAGGATGTGAAGCAGAATTGGAAACTTCCAGGCACAAACACTCACACTCATTGT 437
                      ************** *****************************************  **

consensus_5563#0      TTACATAATCGTGAGCAAGTGCGTGTGTGTATGAGAAGGAAAAA-AAACTGAACTTAGAA 529
consensus_5563#1      TAACATAATCGTGAGCAAGTGCGTGTGTGTATGAGAAGGAAAGAGAAACTAAACTTAGAA 497
                      * **************************************** * ***** *********

consensus_5563#0      AGAAAGAAACAAAAGAAATTAAGATAAAACAAAGGAGAAGAAAGAAAAAAACTCGAACAA 589
consensus_5563#1      AGAAAGATACAAAAGAAAATAAGATAAAACAAAGGAGAAGAAAGAAAAAAACTCGAACAA 557
                      ******* ********** *****************************************

consensus_5563#0      ACAAAAGAAGTTAATAAAACAATGGAGTGTAAAGGATGAGAAAACCAAATAATATCAAAA 649
consensus_5563#1      ACAAAAGAAGTTAATAAAACAATGGAGTGTAAAGGATGAGAAAACAAAATAATATC---- 613
                      ********************************************* **********    

consensus_5563#0      ACACAGATCCCAACGTATGTTGTGTATGTATGTGTCTGTGTGTGTGTGTTTGTGCGTATG 709
consensus_5563#1      ------------------------------------------------------------
                                                                                  

consensus_5563#0      TATGTGCGGCGANGTGTGTAAAACACTGAAANTTTTGTTACAACATTGCCTGTTTAGACC 769
consensus_5563#1      ------------------------------------------------------------
                                                                                  

consensus_5563#0      CGCGCGGTGTCGCCAAGTTGGAAAGTACACGAGATAAGAGAAGCAGAAGAAAAAGAAGAA 829
consensus_5563#1      ------------------------------------------------------------
                                                                                  

consensus_5563#0      GAAGAAGAAGAAGAAGAAGAAAAATAGAAGAATAAGACCCCGAGAACGCGAAACGTTAAC 889
consensus_5563#1      ------------------------------------------------------------
                                                                                  

consensus_5563#0      TTAAGCAAAAGAAAGATTAATTCCAGCGTGAACAGGCGAAAGTGATGCGTTTGGGTTGAA 949
consensus_5563#1      ------------------------------------------------------------
                                                                                  

consensus_5563#0      GGAAAAACAAACAAAAAATACAAAACCACTCAAACGAACGATAAGGATCGTTGAAGATGC 1009
consensus_5563#1      ------------------------------------------------------------
                                                                                  

consensus_5563#0      AAAAAAAAACAAAGCAGTAGCGAAACAGAAGGAAAAAGAGGGAGAAAACGGAACAAACAG 1069
consensus_5563#1      ------------------------------------------------------------
                                                                                  

consensus_5563#0      AAGAAAAAAAAACGTGTATATAACACCGGGTGTTACAAACATTGCAACGTGTTACAAAAT 1129
consensus_5563#1      ------------------------------------------------------------
                                                                                  

consensus_5563#0      AAAAAAATAAAAAAAAAACAAGAAAACATA 1159
consensus_5563#1      ------------------------------