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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 908 fasta sequence
[CCGCGGACGCGTGGGTGCGCTTCGGGAGAAAATGTGTGTTTATTTTCCGCTATTTTGAAGATTTTCTGGTGTACAATTTCCATCGCCCGTGCAAAATAGCAGCTCGGCAAGCGTGCCCAACGCTTTGGGCGGCAAAAAGTGCGCGTAAAACCACTCACCGTATCGTCCTGGCCGTGTAATCGGTGTGCGAGCGGGGTTGAATTTCAGCTCCGAAGGGCATTGCGTTCGCCGTTCGTCTTTTCAGCACGATAACAACTAAATTTGCCACCATAATGGACTTCAAACAGAACGGGTCGCCAACGGCATCAGCAGCAGCAAGTTCCTCCCAACAGCAACAACCGCTCGTCGGTGGCGTTCTGTACGGTAGCGATGCGCGCAACGGAAGCTCCACCGTTCGCTTGCAATCCCTAAAGCAAAACCAGCTGACGGGGCCGAACCCTTCCTCGACCGCCGGTCCACCGCTGCGCCGAAGATGTCGCAGCGAAAGTCTTCCAATGGCACCGCTCCTGTACGGCTCGGCGGACCAGCAGCAAAGCCGATCGAAAAAGACCACCCTCCAAGGTCACGGCCACCATCCTGCCCACCTCAGTAGCCAACATAGGCAAAAGTTCG-CCCCGGGGCAGGATCATCATCCTGCCGGCGGACCGGGCGGCCTGTACATCGAATCGTTCGCCCTGCAGCAGCAACCACACCCGGGCAACCGGAAAGTTCCACTGCCACTAGCGACCCACGAACTGCTGCCCACGATCGCAACAAGTGCTTCCAATGCTATCGGCAGCAACGGGCAGCAACAGGCGAAGGAAAACGTCGCACAAAACCATCTGTACGGGGCGGGCGTGAACGCGAAGGATGTGTACATGAGCGAGCTGGACGGGCTGCGGAAGGATCGGCGCAACGGGGGCTACTAC]
[+] EMBL BM583660 [CCGCGGACGCGTGGGTGCGCTTCGGGAGAAAATGTGTGTTTATTTTCCGCTATTTTGAAGATTTTCTGGTGTACAATTTCCATCGCCCGTGCAAAATAGCAGCTCGGCAAGCGTGCCCAACGCTTTGGGCGGCAAAAAGTGCGCGTAAAACCACTCACCGTATCGTCCTGGCCGTGTAATCGGTGTGCGAGCGGGGTTGAATTTCAGCTCCGAAGGGCATTGCGTTCGCCGTTCGTCTTTTCAGCACGATAACAACTAAATTTGCCACCATAATGGACTTCAAACAGAACGGGTCGCCAACGGCATCAGCAGCAGCAAGTTCCTCCCAACAGCAACAACCGCTCGTCGGTGGCGTCCTGTACGGTAGCGATGCACGCAACGGAAGCTCCACCGTTCGTTTGCAATCCCTAAAGCAAAACCAGCTCACGGGGCCGAACCCTTCCTCGACCGCCGGTCCACCGCTGCGCCGAAGATGTCGCAGCGAAAGTCTTCCAATGGCACCGCTCCTGTACGGCTCGGCGGACCAGCAGCAAAGCCGATCGAAAAAGAGCACCCTCCAAGGTCACGCCCATCATCCTGCCCACCTCAGTAGCCAACATAGGCAAAAGTTCGCCCCCGGGGCAGGATCATCATCCTGCCGGCGGACCGGGCGGCCTGTACATCGAATCGTTCGCCCTGCAGCAGCAACCACACCCGGGCAACCGGAAAGTTCC ]
[+] EMBL BM587300 [ ccgGATTTTCTGGTGTACAATTTCCATCGCCCGTGCAAAATAGCAGCTCGGCAAGCGTGCCCAACGCTTTGGGCGGCAAAAAGTGCGCGTAAAACCACTCACCGTATCGTCCTGGCCGTGTAATCGGTGTGCGAGCGGGGTTGAATTTCAGCTCCGAAGGGCATTGCGTTCGCCGTTCGTCTTTTCAGCACGATAACAACTAAATTTGCCACCATAATGGACTTCAAACAGAACGGGTCGCCAACGGCATCAGCAGCAGCAAGTTCCTCCCAACAGCAACAACCGCTCGTCGGTGGCGTTCTGTACGGTAGCGATGCGCGCAACGGAAGCTCCACCGTTCGCTTGCAATCCCTAAAGCAAAACCAGCTGACGGGGCCGAACCCTTCCTCGACCGCCGGTCCACCACTGCGCCGAAGATGTCGCAGCGAAAGTCTTCCAATGGCACCGCTCCTGTACGGTTCGGCGGACCAGCAGCAAAGCCGATCGAAAAAGACCACCCTCCAAGGTCACGGCCACCATCCTGCGCACCTCAGTAGCCAACATAGGCAAAAGTTCG CCCCGGGGCAGGATCATCATCCTGCCGGCGGACCGGGCGGCCTGTACATCGAATCGTTCGCCCTGCAGCAGCAACCACACCCGGGCAACCGGAAAGTTCCACTGCCACTAGCGACCCACGAACTGCTGCCCACGATCGCAACAAGTGCTTCCA ]
[+] EMBL BM620584 [ ccgATTTGCCACCATAATGGACTTCAAACAGAACGGGTCGCCAACGGCATCAGCAGCAGCAAGTTCCTCCCAACAGCAACAACCGCTCGTCGGTGGCGTTCTGTACGGTAGCGATGCGCGCAACGGAAGCTCCACCGTTCGCTTGCAATCCCTAAAGCAAAACCAGCTGACGGGGCCAAACCCTTCCTCGACCGCCGGTCCACCGCTGCGCCGAAGATGTCGCAGCGAAAGTCTTCCAATGGCACCGCTCCTGTACGGCTCGGCGGACCAGCAGCAAAGCCGATCGAAAAAGACCTCCCTCCAAGGTCACGGCCACCATCCTGCCCACCTCAGTAACCAACATAGGCAAAAGTTCG CCCCGGGGCAGGATCATCATCCTGCCGGCGGACCGGGCGGCCTGTACATCGAATCGTTCGCCCTGCAGCAGCAACCACACCCGGGCAACCGGAAAGTTCCACTGCCACTAGCGACCCACGAACTGCTGCCCACGATCGCAACGAGCGCTTCCAATGCTATCGGCAGCAACGGGCAGCAACAGGCGAAGGAAAACGTCGCACAAAACCATCTGTACGGGGCGGGCGTGAACGCGAAGGATGTGTACATGAGCGAGCTGGACGGGCTGCGGAAGGATCGGCGCAACGGGGGCTACTAC]
consensusID : consensus_5578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[CCGGAAAATGTGTGTTTATTTTCCGCTATTTTGAAGATTTTCTGGTGTACAATTTCCATCGCCCGTGCAAAATAGCAGCTCGGCAAGCGTGCCCAACGCTTTGGGCGGCAAAAAGTGCGCGTAAAACCACTCACCGTATCGTCCTGGCCGTGTAATCGGTGTGCGAGCGGGGTTGAATTTCAGCTCCGAAGGGCATTGCGTTCGCCGTTCGTCTTTTCAGCACGCGTAATTAGACAAGGCCCCGTGTCCAGTGCGGATCTATAATTAATCCGTGTGCGCCATTTATAAATGGCTACGCTGAAGTGAGTGTTGCAAATGTTGTGATTGTACTGTGTGCCGTGTTTCCTCCATTCCTCTTCCCGCCCAATGTAAAACTAAGGGATTTGCGGTTAACGGAAGAAAAAACCGCGACGCGTGTGCATGTGACACAGTGACGTTGCGCCCGTTTTGCGTCCAAAATAAGGGCATTTTCTTGTTGGCGAACGTTGATTTGCTGACATTGACAACCAGCCCCCGATATTGCGTGTTCG]
[+] EMBL BM601570 [CCGGAAAATGTGTGTTTATTTTCCGCTATTTTGAAGATTTTCTGGTGTACAATTTCCATCGCCCGTGCAAAATAGCAGCTCGGCAAGCGTGCCCAACGCTTTGGGCGGCAAAAAGTGCGCGTAAAACCACTCACCGTATCGTCCTGGCCGTGTAATCGGTGTGCGAGCGGGGTTGAATTTCAGCTCCGAAGGGCATTGCGTTCGCCGTTCGTCTTTTCAGCACGCGTAATTAGACAAGGCCCCGTGTCCAGTGCGGATCTATAATTAATCCGTGTGCGCCATTTATAAATGGCTACGCTGAAGTGAGTGTTGCAAATGTTGTGATTGTACTGTGTGCCGTGTTTCCTCCATTCCTCTTCCCGCCCAATGTAAAACTAAGGGATTTGCGGTTAACGGAAGAAAAAACCGCGACGCGTGTGCATGTGACACAGTGACGTTGCGCCCGTTTTGCGTCCAAAATAAGGGCATTTTCTTGTTGGCGAACGTTGATTTGCTGACATTGACAACCAGCCCCCGATATTGCGTGTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5578#0 CCGCGGACGCGTGGGTGCGCTTCGGGAGAAAATGTGTGTTTATTTTCCGCTATTTTGAAG 60
consensus_5578#1 ------------------------CCGGAAAATGTGTGTTTATTTTCCGCTATTTTGAAG 36
*********************************
consensus_5578#0 ATTTTCTGGTGTACAATTTCCATCGCCCGTGCAAAATAGCAGCTCGGCAAGCGTGCCCAA 120
consensus_5578#1 ATTTTCTGGTGTACAATTTCCATCGCCCGTGCAAAATAGCAGCTCGGCAAGCGTGCCCAA 96
************************************************************
consensus_5578#0 CGCTTTGGGCGGCAAAAAGTGCGCGTAAAACCACTCACCGTATCGTCCTGGCCGTGTAAT 180
consensus_5578#1 CGCTTTGGGCGGCAAAAAGTGCGCGTAAAACCACTCACCGTATCGTCCTGGCCGTGTAAT 156
************************************************************
consensus_5578#0 CGGTGTGCGAGCGGGGTTGAATTTCAGCTCCGAAGGGCATTGCGTTCGCCGTTCGTCTTT 240
consensus_5578#1 CGGTGTGCGAGCGGGGTTGAATTTCAGCTCCGAAGGGCATTGCGTTCGCCGTTCGTCTTT 216
************************************************************
consensus_5578#0 TCAGCACGATAACAACTAAATTTGCCACCATAATGGACTTCAAACAGAACGGGTCGCCAA 300
consensus_5578#1 TCAGCACG--CGTAATTAGACAAGGCCCCGTGTC----------CAGTGCGGATCTATAA 264
******** ** ** * * * ** * *** *** ** **
consensus_5578#0 CGGCATCAGCAGCAGCAAGTTCCTCCCAACAGCAACAACCGCTCGTCGGTGGCGTTCTGT 360
consensus_5578#1 TTAATCCGTGTGCGCCA----TTTATAAATGGCTACGCTGAAGTGAGTGTTGCAAATGTT 320
* ** ** * ** ** ** * ** ** *
consensus_5578#0 ACGGTAGCGATGCGCGCAACGGAAGCTCCACCGTTCG-CTTGCAATCCCTAAAGCAAAAC 419
consensus_5578#1 GTGATTGTACTGTGTGCCGTGTTTCCTCCATTCCTCTTCCCGCCCAATGTAAAACTAAGG 380
* * * ** * ** * ***** ** * ** **** * **
consensus_5578#0 CAGCTGACGGGGCCGAACCCTTCCTCGACCGCCGGTCCACCGCTGCGCCGAAGATGTCGC 479
consensus_5578#1 GATTTGCGGTTAACGGAAGAAAAAACCGCGACGCGTGTGCATGTGACACAGTGACGTTGC 440
* ** * ** * * * * ** * ** * ** ** **
consensus_5578#0 AGCGAAAGT-CTTCCAATGGCACCGCTCCTGTACGGCTCGGCGGACCAGCAGCAAAGCCG 538
consensus_5578#1 GCCCGTTTTGCGTCCAAAATAAGGGCATTTTCTTG--TTGGCGAAC--GTTGATTTGCTG 496
* * * ***** * ** * * * **** ** * * ** *
consensus_5578#0 ATCGAAAAAGACCACCCTCCAAGGTCACGGCCACCATCCTGCCCACCTCAGTAGCCAACA 598
consensus_5578#1 A-CATTGACAACCAGCCCCCGATATTGCGTGTTCG------------------------- 530
* * * **** ** ** * * ** *
consensus_5578#0 TAGGCAAAAGTTCGCCCCGGGGCAGGATCATCATCCTGCCGGCGGACCGGGCGGCCTGTA 658
consensus_5578#1 ------------------------------------------------------------
consensus_5578#0 CATCGAATCGTTCGCCCTGCAGCAGCAACCACACCCGGGCAACCGGAAAGTTCCACTGCC 718
consensus_5578#1 ------------------------------------------------------------
consensus_5578#0 ACTAGCGACCCACGAACTGCTGCCCACGATCGCAACAAGTGCTTCCAATGCTATCGGCAG 778
consensus_5578#1 ------------------------------------------------------------
consensus_5578#0 CAACGGGCAGCAACAGGCGAAGGAAAACGTCGCACAAAACCATCTGTACGGGGCGGGCGT 838
consensus_5578#1 ------------------------------------------------------------
consensus_5578#0 GAACGCGAAGGATGTGTACATGAGCGAGCTGGACGGGCTGCGGAAGGATCGGCGCAACGG 898
consensus_5578#1 ------------------------------------------------------------
consensus_5578#0 GGGCTACTAC 908
consensus_5578#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||