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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCAACAAGTAGCCAGAACACACAAACAAACGCAGCCCCCCCTGGAGGATTGTCGTCGTAATCACGCCGTCACAGTGTCATTTTAGTCCGGCGACCCACGATAACGGCAACATTACTCTTTTTTAAAACCATGTGTTTGTGTGTGTGCGTGTCTTTGTCGAGAAGTGGCTGATTGTACAGTGAAGCTGCTCCCCGGATCGATTATCTCGCTGTGACGCTCGGTGGGTTTTTGTTTCGCGCCATGGTCAACTACCCGATCGTTGTACTGCTTGTCGCCCTGGATCGCTTGTGTCGGGTTGCAGTAACCGCGGGAGCAGATCGAGCCACCGCATCCAGTGTGTGTCTATGAAGGGGGTCCCTGATAGTTGAAAACAGTGTTAATCCCGAAGGAAACCAGTCGTGGGGGTCATCGCGCACCGCACCCCGGCACTCCGGCCCCCCGCTTGAGGTGATGCAATTTATTCGCAACAGCCTTTCGTTTTCGTTCATCAGCAACCCGGGAAGCACCCAGCAGCAGATATCGCCCGAAAATGGACCGTCGGAGGCGATGGCGCCGGACGATGGCAAGCTGCCCCGGTCGGCATCGAACGTGAGCGAACAGACACAGTATGCGACGGTGCGGTCGAAGCTACCGCTGAACCTGGGCAGCCCACCGTCCGCGTACAGCACACCGTTCCAGAGCCCGGTCATCCCT]
[+] EMBL BM586695 [CCGCCCACGCGTCCGCCCACGCGTCCGGCAACAAGTAGCCAGAACACACAAACAAACGCAGCCCCCCCTGGAGGATTGTCGTCGTAATCACGCCGTCACAGTGTCATTTTAGTCCGGCGACCCACGATAACGGCAACATTACTCTTTTTTAAAACCATGTGTTTGTGTGTGTGCGTGTCTTTGTCGAGAAGTGGCTGATTGTACAGTGAAGCTGCTCCCCGGATCGATTATCTCGCTGTGACGCTCGGTGGGTTTTTGTTTCGCGCCATGGTCAACTACCCGATCGTTGTACTGCTTGTCGCCCTGGATCGCTTGTGTCGGGTTGCAGTAACCGCGGGAGCAGATCGAGCCACCGCATCCAGTGTGTGTCTATGAAGGGGGTCCCTGATAGTTGAAAACAGTGTTAATCCCGAAGGAAACCAGTCGTGGGGGTCATCGCGCACCGCACCCCGGCACTCCGGCCCCCCGCTTGAGGTGATGCAATTTATTCGCAACAGCCTTTCGTTTTCGTTCATCAGCAACCCGGGAAGCACCCAGCAGCAGATATCGCCCGAAAATGGACCGTCGGAGGCGATGGCGCCGGACGATGGCAAGCTGCCCCGGTCGGCATCGAACGTGAG ]
[+] EMBL BM630713 [ ccgGGCTGATTGTACAGTGAAGCTGCTCCCCGGATCGATTATCTCGCTGTGACGCTCGGTGGGTTTTTGTTTCGCGCCATGGTCAACTACCCGATCGTCGTACTGCTTGTCGCCCTGGATCGCTTGTGTCGGGTTGCAGTAACCGCGGGAGCAGATCGAGCCACCGCATCCAGTGTGTGTCTATGAAGGCGGTCCCTGATAGTTGAAAACAGTGTTAATCCCGAAGGAAACCAGTCGTGGGGGTCATCGCGCACCGCACCCCGGCACTCCGGCCCCCCGCTTGAGGTGATGCAATTTATTCGCAACAGCCTTTCGTTTTCGTTCATCAGCAACCCGGGAAGCACCCAGCAGC G ATCGCCCGAAAATGGACCGTCGGAGGCGATGGCGCCGGACGATGGCAAGCTGCCCCGGTCGGCATCGAACGTGAGCGAACAGACACAGTATGCGACGGTGCGGTCGAAGCTACCGCTGAACCTGGGCAGCCCACCGTCCGCGTACAGCACACCGTTCCAGAGCCCGGTCATCCCT]
consensusID : consensus_5579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[GTTCATCATACCGGCAAATGACACCCCGCGAAATGCAACGGAACCGAATGGCGTGTCCACTTATCTGCCTGGAAGACTCAACAGACTGCAGCTAGACACAAGCTAGTAAGTGCGTTCCCGTGGTTTATGGGAGACGTTGGTGGTGGTACTGCTTGAGCATCATGGCAGGTTGCTTGGATGAAGTAGCGTTATTATACGGTGACCGTGTGTGGTTTGGGCAAACATTTGTGTGGAACAGCATAATGGATTTATACCACCAGCCGATTCAGTGTGCTGACAACAAGTAGCCAGAACAGACACACAAACGCAGCCCCCCCTGGAGGATTGTCGTCGTAATCACGCCGTCACAGTGTCATTTTGGTCCGGCGACCCACGATAACGGCAACATTACTGTTTTTTTTAAACTATGTGTTTGTGTGTGTGCGTGTCTTTGTCGAGAAGTGGCTGATTGTACAGTGAAGCTGCTCCCCGGATCGATTATCTCGCTGTGACGCTCGGTGGGTTTTTGTTTCGCGCCATGGTCAACTACCCGATCGTTGTACTGCTTGTCGCCCGGGATCGCTTGTGTAAGTTGTTTGGGTGATTGTATTGGGAAATCGCGCATGTATCATTCACGTACCACACTGACTGTACTATCTAATAAACGATAATCCGCCCAGCGGAAGTGCGGACGCGTGGGCGG]
[-] EMBL BM606734 [GTTCATCATACCGGCAAATGACACCCCGCGAAATGCAACGGAACCGAATGGCGTGTCCACTTATCTGCCTGGAAGACTCAACAGACTGCAGCTAGACACAAGCTAGTAAGTGCGTTCCCGTGGTTTATGGGAGACGTTGGTGGTGGTACTGCTTGAGCATCATGGCAGGTTGCTTGGATGAAGTAGCGTTATTATACGGTGACCGTGTGTGGTTTGGGCAAACATTTGTGTGGAACAGCATAATGGATTTATACCACCAGCCGATTCAGTGTGCTGACAACAAGTAGCCAGAACAGACACACAAACGCAGCCCCCCCTGGAGGATTGTCGTCGTAATCACGCCGTCACAGTGTCATTTTGGTCCGGCGACCCACGATAACGGCAACATTACTGTTTTTTTTAAACTATGTGTTTGTGTGTGTGCGTGTCTTTGTCGAGAAGTGGCTGATTGTACAGTGAAGCTGCTCCCCGGATCGATTATCTCGCTGTGACGCTCGGTGGGTTTTTGTTTCGCGCCATGGTCAACTACCCGATCGTTGTACTGCTTGTCGCCCGGGATCGCTTGTGTAAGTTGTTTGGGTGATTGTATTGGGAAATCGCGCATGTATCATTCACGTACCACACTGACTGTACTATCTAATAAACGATAATCCGCCCAGCGGAAGTGCGGACGCGTGGGCGG]
consensusID : consensus_5579#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[CCGGTAACGTGACAGTAGTACCGCGGTGTCCGGCTCGGTCAAACACGGTCAAGCTCATCTCACCTTCTGGATCAGTGACGGAAGCTTGAATACGATTCACAAGGAATTATCTTAAGAGCATCACGGATCACATCTTTACCGGCAAATGACACCCCGCGAAATGCAACGGAACCGAATGGCGTGTCCACTTATCTGCCTGGAAGACTCAACAGACTGCAGCTAGACACAAGCTAGTCGGGTTGCAGTAACCGCGGGAGCAGATCGAGCCACCGCATCCAGTGTGTGTCTATGAAGGGGGTCCCTGATAGTTGAAAACAGTGTTAATCCCGAAGGAAACCAGTCGTGGGGGTCATCGCGCACCGCACCCCGGCACTCCGGCCCCCCGCTTGAGGTGATGCAATTTATTCGCAACAGCCTTTCGTTTTCGTTCATCAGCAACCCGGGAAGCACCCAGCAGCAGATATCGCCCGAAAATGGACCGTCGGAGGCGATGGCGCCGGACGATGGCAAGCTGCCCCGGTCGGCATCGAACGTGAGCGAACAGACACAGTATGCGACGGTGCGGTCGAAGCTACCGCTG]
[+] EMBL BM583759 [CCGGTAACGTGACAGTAGTACCGCGGTGTCCGGCTCGGTCAAACACGGTCAAGCTCATCTCACCTTCTGGATCAGTGACGGAAGCTTGAATACGATTCACAAGGAATTATCTTAAGAGCATCACGGATCACATCTTTACCGGCAAATGACACCCCGCGAAATGCAACGGAACCGAATGGCGTGTCCACTTATCTGCCTGGAAGACTCAACAGACTGCAGCTAGACACAAGCTAGTCGGGTTGCAGTAACCGCGGGAGCAGATCGAGCCACCGCATCCAGTGTGTGTCTATGAAGGGGGTCCCTGATAGTTGAAAACAGTGTTAATCCCGAAGGAAACCAGTCGTGGGGGTCATCGCGCACCGCACCCCGGCACTCCGGCCCCCCGCTTGAGGTGATGCAATTTATTCGCAACAGCCTTTCGTTTTCGTTCATCAGCAACCCGGGAAGCACCCAGCAGCAGATATCGCCCGAAAATGGACCGTCGGAGGCGATGGCGCCGGACGATGGCAAGCTGCCCCGGTCGGCATCGAACGTGAGCGAACAGACACAGTATGCGACGGTGCGGTCGAAGCTACCGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5579#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCAACAAGTAGCCAGAACACACAAACAAACGCA 60
consensus_5579#2 ------------------------------------------------------------
consensus_5579#1 ----------------------------GTTCATCATACCGGCAAATGACACCCCGCGAA 32
consensus_5579#0 GCCCCCCCTGGAGGATTGTCGTCGTAATCACGCCGTCACAGTGTCATTTTAGTCCG--GC 118
consensus_5579#2 ---------------CCGGTAACGTGACAGTAGTACCGCGGTGTC----CGGCTCG--GT 39
consensus_5579#1 ATGCAACGGAACCGAATGGCGTGTCCACTTATCTGCCTGGAAGACTCAACAGACTGCAGC 92
* * * * * * * *
consensus_5579#0 GACCCACGATAACGGCAAC---ATTACTCTTTTTTAAAACCATGTGTTTGTGTGT-GTGC 174
consensus_5579#2 CAAACACGGTCAAGCTCAT---CTCACC---TTCTGGATCAGTG---ACGGAAGC-TTGA 89
consensus_5579#1 TAGACACAAGCTAGTAAGTGCGTTCCCGTGGTTTATGGGAGACGTTGGTGGTGGTACTGC 152
* *** * * * ** * * * **
consensus_5579#0 GTGTCTTTGTCGAGAAGTGGC--TGATTGTACAGTGA-AGCTGCTCCCCGG-ATCGATTA 230
consensus_5579#2 ATACGATTCACAAGGAATTATCTTAAGAGCATCACGG-ATCACATCTTTACCGGCAAATG 148
consensus_5579#1 TTGAGCATCATGGCAGGTTGCTTGGATGAAGTAGCGTTATTATACGGTGACCGTGTGTGG 212
* * * * * *
consensus_5579#0 TCTCGCTGTGACGCTCGGTGGGTTTTTGTTTCGCGCCATGGTCAACTACCCGATCG-TTG 289
consensus_5579#2 ACACCCCGCGAAATGCAACGGAACCGAATGGCGTGTC-CACTTATCTGCCTGGAAGACTC 207
consensus_5579#1 TTTGGGCAAACATTTGTGTGGAACAGCATAATGGATT-TATACCACCAGCCGATTCAGTG 271
** * * * * * *
consensus_5579#0 TACTGCTTGTCGCCCTGGATCGCTTGTGTCGGGTTGCAGTAACCGCGGGAGCAG-ATCG- 347
consensus_5579#2 AACAGACTGCAGCTAGACACAAGCTA-GTCGGGTTGCAGTAACCGCGGGAGCAG-ATCG- 264
consensus_5579#1 TGCTGACAACAAGTAGCCAGAACAGACACACAAACGCAGCCCCCCCTGGAGGATTGTCGT 331
* * * **** ** * **** * ***
consensus_5579#0 ---AGCCACCGCATC-CAGTGTGTGTCTATGAAGGGGGTCCCTGATAGTTGAAAA--CAG 401
consensus_5579#2 ---AGCCACCGCATC-CAGTGTGTGTCTATGAAGGGGGTCCCTGATAGTTGAAAA--CAG 318
consensus_5579#1 CGTAATCACGCCGTCACAGTGTCATTTTGGTCCGGCGACCCACGATAACGGCAACATTAC 391
* *** * ** ****** * * ** * ** **** * ** *
consensus_5579#0 TGTTAATCCCGAAGGAAACCAGT-----CGTGGGGGTCATCG-CGCACCGCACCC----- 450
consensus_5579#2 TGTTAATCCCGAAGGAAACCAGT-----CGTGGGGGTCATCG-CGCACCGCACCC----- 367
consensus_5579#1 TGTTTTTTTTAAACTATGTGTTTGTGTGTGTGCGTGTCTTTGTCGAGAAGTGGCTGATTG 451
**** * ** * * *** * *** * * ** * *
consensus_5579#0 --CGGCACTCCGGCCCCCCGCTTGAGGTGATGCAATTT-ATTCGCAACAGCCTTTCGTTT 507
consensus_5579#2 --CGGCACTCCGGCCCCCCGCTTGAGGTGATGCAATTT-ATTCGCAACAGCCTTTCGTTT 424
consensus_5579#1 TACAGTGAAGCTGCTCCCCGGATCGATTATCTCGCTGTGACGCTCGGTGGGTTTTTGTTT 511
* * * ** ***** * * * * * * * * * *** ****
consensus_5579#0 TCGTTCAT---CAGCAACCCGG-----GAAGCACCCAGCAGCAGATATCGCCCGAAAATG 559
consensus_5579#2 TCGTTCAT---CAGCAACCCGG-----GAAGCACCCAGCAGCAGATATCGCCCGAAAATG 476
consensus_5579#1 CGCGCCATGGTCAACTACCCGATCGTTGTACTGCTTGTCGCCCGGGATCGCTTGTG--TA 569
*** ** * ***** * * * * * * ***** * *
consensus_5579#0 GACCGTCGGAGGCGATGGCGCCGGACGATGGCAAGCTGCCCCGGTCG-GCATCGAACGTG 618
consensus_5579#2 GACCGTCGGAGGCGATGGCGCCGGACGATGGCAAGCTGCCCCGGTCG-GCATCGAACGTG 535
consensus_5579#1 AGTTGTTTG-GGTGATTGTATTGGGAAATCGCGCA-TGTATCATTCACGTACCACAC-TG 626
** * ** *** * ** ** ** ** * ** * * * ** **
consensus_5579#0 AGCGAACAGACACAGTATGCGACGGTGCGGTCGAAGCTACCGCTGAACCTGGGCAGCCCA 678
consensus_5579#2 AGCGAACAGACACAGTATGCGACGGTGCGGTCGAAGCTACCGCTG--------------- 580
consensus_5579#1 ACTGTACTATC-TAATAAACGATAATCCGCCCAGCGGAAGTGCGGACGCGTGGGCGG--- 682
* * ** * * ** *** * ** * * * ** *
consensus_5579#0 CCGTCCGCGTACAGCACACCGTTCCAGAGCCCGGTCATCCCT 720
consensus_5579#2 ------------------------------------------
consensus_5579#1 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||