These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [CCGCCCACGCGTCCGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCACCAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGATCGGAGTGGTGTGCCGGCCCTGCGCTCCAAGCGCCAATCGTTTGCCGAGGCCAGCGACTCGAAGATGGTGTACATGCAGCGGCGCCGCCGGTCCGCCTACCACGTGCCCGAGTCGGACGATTTTGCGCCGGGCGCGGCGGCCATCGACGGCGGCAGTGCGGCGACCGTCTGCAGCAAGCTAACACTGCCGCTCGAGGTGAAGGCGGACGATATGTTCAAGTACTACAGCTTCAATTTTGCCATTTACGTCGCCACCAAGCAGGAAGAAGGGCTGTACAATCTGTACTTCCACAGCTGCCCGAACTACGCGCCGAACAGTCTGTACGAGCTGAACTTTAACGTCGACATCGAGGAGAAGAACAGTGGCAACTATCTGTCCGCGGGCGAGATGCCGCTGCCGGCCCTGTACTTCATGATGTCGGTGCTGTTCTTCCTGTCCGGTCTGTTCTGGGTGTTTATACTGCGCAAGAGCAAGCATCCGCTGTTCAAGATCCACTATCTGATGGG] [+] EMBL BM585206 [CCGCCCACGCGTCCGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCACCAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGATCGGAGTGGTGTGCCGGCCCTGCGCTCCAAGCGCCAATCGTTTGCCGAGGCCAGCGACTCGAAGATGGTGTACATGCAGCGGCGCCGCCGGTCCGCCTACCACGTGCCCGAGTCGGACGATTTTGCGCCGGGCGCGGCGGCCATCGACGGCGGCAGTGCGGCGACCGTCTGCAGCAAGCTAACACTGCCGCTCGAGGTGAAGGCGGACGATATGTTCAAGTACTACAGCTTCAATTTTGCCATTTACGTCGCCACCAAGCAGGAAGAAGGGCTGTACAATCTGTACTTCCACAGCTGCCCGAACTACGCGCCGAACAGTCTGTACGAGCTGAACTTTAACGTCGACATCGAGGAGAAGAACAGTGGCAACTATCTGTCCGCGGGCGAGATGCCGCTGCCGGCCCTGTACTTCATGATGTCGGTGCTGTTCTTCCTGTCCGGTCTGTTCTGGGTGTTTATACTGCGCAAGAGCAAGCATCCGCTGTTCAAGATCCACTATCTGATGGG] consensusID : consensus_5582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 661 fasta sequence [CCGCCCACGCGTCCGTTGTGTTTATACTGGTCGCCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTCGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCATCAAGACAAATGCATACTGACCGAACCGGTTGCGGTACAGAGTAAC-GGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGATCGGACGCGGTGTGC] [+] EMBL BM593280 [CCGCCCACGCGTCCGTTGTGTTTATACTGGTCGCCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTCGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCATCAAGACAAATGCATACTGACCGAACCGGTTGCGGTACAGAGTAAC GGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGATCGGACGCGGTGTGC] [+] EMBL BM583901 [ ccgTTATACTGGTCGCCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTCGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCATCAAGACAAATGCATACTGACCGAACCGGTTGCGGTACAGAGTAACGGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCAC ] consensusID : consensus_5582#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CCGCCCACGCGTCCGCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTTGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGAACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCACCAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGAATCGGAG] [+] EMBL BM594225 [CCGCCCACGCGTCCGCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTTGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGAACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCACCAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGAATCGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5582#1 CCGCCCACGCGTCCGT-------TGTGTTTATACTGGTCGCCCCGCAGTGAAAACAGCGC 53 consensus_5582#2 CCGCCCACGCGTCCG--------------------------CCCGCAGTGAAAACAGCGC 34 consensus_5582#0 CCGCCCACGCGTCCGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCAC 60 *************** **** * * ** * consensus_5582#1 AAAGG-----GTCGACGGAACTTTGTCATCATTTTTCCGAGC--TGGCACGAGCGCTTGC 106 consensus_5582#2 AAAGG-----GTCGACGGAACTTTGTCATCATTTTTCCGAGC--TGGCACGAGCGCTTGC 87 consensus_5582#0 CAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTC 120 *** * ** ** * ** * * *** ** *** ** * * consensus_5582#1 TGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGA-AGCAGG- 164 consensus_5582#2 TGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGA-AGCAGG- 145 consensus_5582#0 TTCAAGATGG-ACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAA 179 * ** ** * * ** *** * * **** ** * ** **** consensus_5582#1 CATAAGGTAGAAGACAGGGTCAAGGCGCGTAC-GGCACCGAGCTAAACTGCACGCCGCCA 223 consensus_5582#2 CATAAGGTAGAAGACAGGGTCAAGGCGCGTAC-GGCACCGAGCTAAACTGCACGCCGCCA 204 consensus_5582#0 CATTCACCTGTACAAGGATCGGAGTGGTGTGCCGGCCCTGCGCT---CCAAGCGCCAATC 236 *** * * * * ** * ** * *** * * *** * **** consensus_5582#1 GTCCGG-GAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGA 282 consensus_5582#2 GTCCGG-GAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGA 263 consensus_5582#0 GTTTGCCGAGGCCAGCGACTCGAAGATGGTGTACAT-GCAGCGG-CGCCGCCGGT-CCGC 293 ** * *** ** ** ** *** * ** **** ** ** *** * * consensus_5582#1 TCGTTGCACTGCTCGTGTCGGCCGCCGTCGC-CCGA---CGGCA-CCACCTGGAAGTGCG 337 consensus_5582#2 TCGTTGCACTGCTCGTGTCGGCCGCCGTTGC-CCGA---CGGCA-CCACCTGGAAGTGCG 318 consensus_5582#0 CTACCACG-TGCCCGAGTCGGACGATTTTGCGCCGGGCGCGGCGGCCATCGACGGCGGCA 352 * *** ** ***** ** * ** *** **** *** * ** consensus_5582#1 GGATGATTTCCGCCGGTAC--ATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTG 395 consensus_5582#2 GGATGATTTCCGCCGGTAC--ATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTG 376 consensus_5582#0 GTGCGGCGACCGTCTGCAGCAAGCTAACACTGC-CGCTCGAGGTGAAGGCGGACGATATG 411 * * *** * * * * ** * * ** ** *** * * * ** * ** ** consensus_5582#1 CTCGA-CG-TGCGGGT---GTCCCACT-TTCGCGTCGAT-CCGGGCACGGAGGAAAACAT 448 consensus_5582#2 CTCGAACG-TGCGGGT---GTCCCACT-TTCGCGTCGAT-CCGGGCACGGAGGAAAACAT 430 consensus_5582#0 TTCAAGTACTACAGCTTCAATTTTGCCATTTACGTCGCCACCAAGCA-GGAAGAAGGGCT 470 ** * * * * * * * ** ***** ** *** *** *** * consensus_5582#1 GTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAAC---CCGTAC---CTGGA 502 consensus_5582#2 GTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAAC---CCGTAC---CTGGA 484 consensus_5582#0 GTACAATCTGTACTTCCACAGCTGCCCGAACTACGCGCCGAACAGTCTGTACGAGCTGAA 530 ** ** * ** *** * * * * ** **** * **** *** * consensus_5582#1 CTC--GCATCAAGAC-----AAATGCATACTGAC--CGAACCGGTTGCGGTACAGAGTAA 553 consensus_5582#2 CTC--GCACCAAGAC-----AAATGCATACTGAC--CGAACCGGTCGCGGTACAGAGTAA 535 consensus_5582#0 CTTTAACGTCGACATCGAGGAGAAGAACAGTGGCAACTATCTGTCCGCGG-GCGAGATGC 589 ** * * * * * * * * * ** * * * * * **** * * consensus_5582#1 CGG-ACCGATCGTGTTCTTCAAGATG--GACCTCAAGCAGAATGTCGTGCACGTCAGCTG 610 consensus_5582#2 CGG-ACCGATCGTGTTCTTCAAGATG--GACCTCAAGCAGAATGTCGTGCACGTCAGCTG 592 consensus_5582#0 CGCTGCCGGCCCTGTACTTCATGATGTCGGTGCTGTTCTTCCTGTCCGGTCTGTTCTGGG 649 ** *** * *** ***** **** * * **** * ** * consensus_5582#1 TTCCAAGGATTGGCA-GAACATTCACC---TGTACAAGGA-TCGGACGCGGTGTGC 661 consensus_5582#2 TTCCAAGGATTGGCA-GAACATTCACC---TGTACAAGGAATCGGAG--------- 635 consensus_5582#0 TGTTTATACTGCGCAAGAGCAAGCATCCGCTGTTCAAGATCCACTATCTGATGGG- 704 * * * *** ** ** ** * *** **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||