These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1197 fasta sequence [CCGGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAGGGTAGGTCTCGGGCCAGACAGCATGGTACATTGCTCAGCAGCTGAGCGCAGCGTAGGTACAGTTGAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGTACGGTTTGTACACCAACTCAGTGCATATGCAATATAATTATAAGGCTCTACTAATGCACATCTGTTATGGAGGCGTTTTAGGGCGAATTACGGAAAGTGAGTCAACCTGCGTATACGGTTCGGCTCCGACTGGCTGGTCACTCAGCGAGCCGAGAGGCCACTCAGCACGATCGAAAGGACGATCGTGCTCTCTTGGATTAAGGCGGCCGA-GCG-GGACGGACACACACAAAAAGGGCTTAGGATTAATAAATTATATATTACTGTTTTGTTTTTTTAATAAGTACAACGTCGTTTTAGCAAAGCCCCACAAAGATCACAAAAGTGGCGACGAGAAAAGTTAATGTGATCGTTTCGTGTTGTAAAGTGCTGACCAAATTTTAATTCGTTTTTTGTTCGTTTTCTTCCGTGTCCCGCTCACACACATACACCCACACAATTGCGCCACCACGTCCCAAGAAGCGCAAGATGAACCCCGCTGATGCAACGATGGATTTACCGACGGAGGAGGAGCAGCGACGTGCATCCTTAGGCCGGCCGGGATTTNTCAACCCGGCGGTGATGCAGCAACCCGGAGCATCGCGAGCCGCACGTTCCCTCCGTGCACGAAGTAGCGTTCCATCATCAGGTGTCCCCAAATGGGCACCTCTATCCGGCATCGCNCAATTGGGACCCGCATCAGCGCCGCCGGTATCAGCGCCATCGCAAGTTTGNGCAACCGGCATCGCAAAACGGGGCTCAGCTNGTAGTGGATAACCGCCGTACTNCCTGGCAAACNGCTGAANATTGATGCAGGGGAACCAAAAGTTGGAGCCGCNAGGGCGAAGCAAGGGCAGGGCNTCTNATTTGACGGTAAAACAGTAAAGTGNACCCANGGGGANAAGGCAAGGCGAAGGCGCGGGAGTTATAGACGGCCAGANGTTNGCAATCCGAGCAGGCAAGGGCAAGGGGGAAGGAATAGGGCCA] [+] EMBL BM641240 [CCGGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAGGGTAGGTCTCGGGCCAGACAGCATGGTACATTGCTCAGCAGCTGAGCGCAGCGTAGGTACAGTTGAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGTACGGTTTGTACACCAACTCAGTGCATATGCAATATAATTATAAGGCTCTACTAATGCACATCTGTTATGGAGGCGTTTTAGGGCGAATTACGGAAAGTGAGTCAACCTGCGTATACGGTTCGGCTCCGACTGGCTGGTCACTCAGCGAGCCGAGAGGCCACTCAGCACGATCGAAAGGACGATCGTGCTCTCTTGGATTAAGGCGGCCGA GCG GGACGGACACACACAAAAAGGGCTTAGGATTAATAAATTATATATTACTGTTTTGTTTTTTTAATAAGTACAACGTCGTTTTAGCAAAGCCCCACAAAGATCACAAAAGTGGCGACGAGAAAAGTTAATGTGATCGTTTCGTGTTGTAAAGTGCTGACCAAATTTTAATTCGTTTTTTGTTCGTTTTCTTCCGTGTCCCGCTCACACACATACACCCACACAATTGCGCCACCACGTCCCAAGAAGCGCAAGATGAACCCCGCTGA ] [+] EMBL BX468335 [ gcaagaatCGGCCGAGGCGNNGACGGTCACACAC AAAAGGGCTTAGGATTAATAAAT TATATTATTGTATTG TTTTAAATAAGTACAAAATCGTTTTAGCCAAGCCCCACAAATATCACAAAAGTGGCGACGAGAAAAGTTAATGTGATCGTTTCGTGTTGTAAAGTGCTGACCAAATTTTAATTCGTTTTTTGTTCGTTTTCTTCCGTGTCCCGCTCACACACATACACCCACACAATTGCGCCACCACGTCCCAAGAAGCGCAAGATGAACCCCGCTGATGCAACGATGGATTTACCGACGGAGGAGGAGCAGCGACGTGCATCCTTAGGCCGGCCGGGATTTNTCAACCCGGCGGTGATGCAGCAACCCGGAGCATCGCGAGCCGCACGTTCCCTCCGTGCACGAAGTAGCGTTCCATCATCAGGTGTCCCCAAATGGGCACCTCTATCCGGCATCGCNCAATTGGGACCCGCATCAGCGCCGCCGGTATCAGCGCCATCGCAAGTTTGNGCAACCGGCATCGCAAAACGGGGCTCAGCTNGTAGTGGATAACCGCCGTACTNCCTGGCAAACNGCTGAANATTGATGCAGGGGAACCAAAAGTTGGAGCCGCNAGGGCGAAGCAAGGGCAGGGCNTCTNATTTGACGGTAAAACAGTAAAGTGNACCCANGGGGANAAGGCAAGGCGAAGGCGCGGGAGTTATAGACGGCCAGANGTTNGCAATCCGAGCAGGCAAGGGCAAGGGGGAAGGAATAGGGCCA] consensusID : consensus_5589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 926 fasta sequence [CGAGGAACACGTTCGTCACGATCGCCACTTCGTACGAGCGCGTAATCAGCTGTACGCAGTGGTCTAGCTGTAGGTAAAGGTGCTTGATCTCCTGCAACCGTACTGCGCGATGCTTGCCAATGGCAGTGCGCAGCTGTTGGTTAACTGTATGCTGCAGCTTGTAAATTAGTACCGTACCGGCATAGTACTGTGCTAGCGACATGCTCGCCAGCATGTTCGGCAGCACATAGGCGCCCATGGTGAACAGTGTAGACCAAATGCCCCCATAGAACAAGTGAGCCACCGCGAGCCCCACACCGGAGGTAAGGGTAAAAAATATCCCAAACCAGTACAGCCTGAGGCGAAGGTAGAGCAGCAGTTCAGTCCACTCGGACGACGACACTGTCGCGGCAACGGTAACGATCCGCTCTAGACATTGGCTGTACCGTACCGTCTCACTGTAGCCCCTGAGCATGGTCTGCACGGTGATGCATAGGTTCAGCACCATCTCGTTCACGTACAGTACGGCGGTAAAGAACGGAATCGGCAGTTCGAGCAGCTTTACGGTCGCTTGGTAGCAGCACAGTATCACCCAGATGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAAGGTAGGTCTCGGGCCAGACAGCATGGTACATTGCTCAGGAGTGCGCGCAGCGTAGGTACAGTTGAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGCACGGTTTGTGCACCAACTCGGTGCATATGCAATGTAATTATAAGGCTCTACTAATACACATCATTACGTGATGGTAAATAGATGAATAAATAAATAAATGCCCGTTCGATAGCAAATGA] [-] EMBL CNS09OVJ [CGAGGAACACGTTCGTCACGATCGCCACTTCGTACGAGCGCGTAATCAGCTGTACGCAGTGGTCTAGCTGTAGGTAAAGGTGCTTGATCTCCTGCAACCGTACTGCGCGATGCTTGCCAATGGCAGTGCGCAGCTGTTGGTTAACTGTATGCTGCAGCTTGTAAATTAGTACCGTACCGGCATAGTACTGTGCTAGCGACATGCTCGCCAGCATGTTCGGCAGCACATAGGCGCCCATGGTGAACAGTGTAGACCAAATGCCCCCATAGAACAAGTGAGCCACCGCGAGCCCCACACCGGAGGTAAGGGTAAAAAATATCCCAAACCAGTACAGCCTGAGGCGAAGGTAGAGCAGCAGTTCAGTCCACTCGGACGACGACACTGTCGCGGCAACGGTAACGATCCGCTCTAGACATTGGCTGTACCGTACCGTCTCACTGTAGCCCCTGAGCATGGTCTGCACGGTGATGCATAGGTTCAGCACCATCTCGTTCACGTACAGTACGGCGGTAAAGAACGGAATCGGCAGTTCGAGCAGCTTTACGGTCGCTTGGTAGCAGCACAGTATCACCCAGATGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAAGGTAGGTCTCGGGCCAGACAGCATGGTACATTGCTCAGGAGTGCGCGCAGCGTAGGTACAGTTGAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGCACGGTTTGTGCACCAACTCGGTGCATATGCAATGTAATTATAAGGCTCTACTAATACACATCATTACGTGATGGTAAATAGATGAATAAATAAATAAATGCCCGTTCGATAGCAAATGA] [-] EMBL CNS092M2 [ GGTAGCAGAACAGTATCACCCAGATGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAAGGTAGGTCTCGGGCCAGACAGCATGGTACATTGCTCAGGAGTGCGCGCCGCGTAGGTACAGTTGAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGCACGGTTTGTGCACCAACTCGGTGCATATGCAATGTAATTATAAGGCTCTACTAATACACATCATTACGTGATGGTAAATAGATGAATAAATAAATAAATGCCCGTTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5589#0 CCGGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAGGGTAG 60 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 GTCTCGGGCCAGACAGCATGGT-ACATTGCTCAGCAGCTGAGCGCAGCGTAGGTACAGTT 119 consensus_5589#1 ---------CGAGGAACACGTTCGTCACGATCGCCACTTCGTACGAGCGCGTAATCAGCT 51 * * ** * * * ** ** * **** *** * consensus_5589#0 GAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGG 179 consensus_5589#1 GTACGCAGTGGTCTAGCTGTAGGTA---AAGGTGCTTGATCTCCTGCAACCGTACTGCGC 108 * * * **** ** ** ** * ******** * ** ** * * * consensus_5589#0 CGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGTACGGT 239 consensus_5589#1 GATGCTTG----------CCAATGGCAGTGCGCAGCTGTTGGTTAACTGTATGCTGCAGC 158 ****** ** * * ** ** ** * * * * consensus_5589#0 TTGTACACCAACTCAGTGCATATGCAATATAATTATAAGGCTCTACTAATGCACATCTGT 299 consensus_5589#1 TTGTAAATTAGTACCGTACCGGCATAGTACTGTGCTAGCGACATGCT--CGCCAGCATGT 216 ***** * * * ** * * ** * ** * * ** ** *** consensus_5589#0 TATGGAGGCGTTTTAGGGCGAATTACGGAAAGTG-AGTCAACCTGCGTATACGGTTCGGC 358 consensus_5589#1 T-CGGCAGCACATAGGCGCCCATGGTGAACAGTGTAGACCAAATGCCCCCATAGAACAAG 275 * ** ** * * ** ** * * **** ** * * *** * * * consensus_5589#0 TCCGAC-TGGCTGGTCACTCAGCGAGCCGAGAGGCCACTCAGCACGATCGAAAGGACGAT 417 consensus_5589#1 TGAGCCACCGCGAGCCCCACACCGGAGGTAAGGGTAA---AAAATATCCCAAACCA---- 328 * * * ** * * * ** ** * ** * * * * *** * consensus_5589#0 CGTGCTCTCTTGGATTAAGGCGGCCGAGCGGGACGGACACACACAAAAAGGGCTTAGGAT 477 consensus_5589#1 -GTACAGCCTGAGGCGAAGGTAGAGCAGCAGTTCAGTC-CACTCGGACGACGACACTGTC 386 ** * ** * **** * *** * * * * *** * * * * consensus_5589#0 TAATAAATTATATATTACTGTTTTGTTTTTTTAATAAGTACAACGTCGTTTTAGCAAAGC 537 consensus_5589#1 GCGGCAACGGTAACGATCCGCTCTAGACATTGGCT--GTACCGTACCGTCTCACTGTAGC 444 ** ** * * * * ** * **** *** * * *** consensus_5589#0 CCCACAAAGATCACAAAAGTGGCGACGAGAAAAGTTAATGTGATC--GTTT-CGTGTTGT 594 consensus_5589#1 CCC-TGAGCATGGTCTGCACGGTGATGCATAGGTTCAGCACCATCTCGTTCACGTACAGT 503 *** * ** ** ** * * * * *** *** *** ** consensus_5589#0 AAAGTGCTGACCAAATTTTAATTCGTTTTTTGTTCG--TTTTCTTCCGTGTCCCGCTCAC 652 consensus_5589#1 ACGGCGGTAA--AGAACGGAATCGGCAGTTCGAGCAGCTTTACGGTCGCTTGGTAGCAGC 561 * * * * * * * *** * ** * * *** * ** * * consensus_5589#0 ACACATACACCCACACAATTGCGCCACCACGTCCCAAGAAGCGCAAGATGAACCCCGCTG 712 consensus_5589#1 ACAGTATCACCCAGATGAACGTGCCGGCG-------GTGAGCAGACATCGGGCCTGCTTA 614 *** ****** * * * *** * *** * * ** * consensus_5589#0 ATGCA-ACGATGGATTTACCGACGGAGGAGGAGCAGCGACGTGCATCCTTAGGCCGGCCG 771 consensus_5589#1 AAGTACGCCCTAGAAGGTAGGTCTCGGGCCAGACAGCATGGTACAT--------TGCTCA 666 * * * * * ** * * ** **** ** *** * * consensus_5589#0 GGATTTNTCAACCCGGCGGTGATGCAGCAACCCGGAGCATCGCGAGCCGCACGTTCCCTC 831 consensus_5589#1 GGA---GTGCGCGCAGCGTAGGTACAGTTGAAAAGATTGGTAC-AGTTGCAGCTTCCTAA 722 *** * * * *** * * *** ** * ** *** **** consensus_5589#0 CGTGCACGAAGTAGCGTTCCATCATCA-GGTGTCCCCAAATGGGCACCTCTATCCGGCAT 890 consensus_5589#1 GGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGAC 782 **** * * *** ** * ** ** ** * * ** * ** * * * consensus_5589#0 CGCNCAATTGGGACCCGCATCAGCGCCGC-CGGTATCAGCGCCATCGCAAGTTTGNGCAA 949 consensus_5589#1 CACAC----GTGCCACACAATACTGGCGCACGGTTTGTGCACCAACTCG-----GTGCAT 833 * * * * * * * ** * * *** **** * ** *** * * * *** consensus_5589#0 CCGGCATCGCAAAACGGGGCTCAGCTNGTAGTGGATAACCGCCGTACTNCCTGGCAAACN 1009 consensus_5589#1 ATGCAATGTAATTATAAGGCTCTACTAATAC------ACATCATTACGTGATGGTAAATA 887 * ** * * ***** ** ** ** * *** *** *** consensus_5589#0 GCTGAANATTGATGCAGGGGAACCAAAAGTTGGAGCCGCNAGGGCGAAGCAAGGGCAGGG 1069 consensus_5589#1 GATGAATA--AATAAATAAATGCCC---GTTCGA-TAGCAAATGA--------------- 926 * **** * ** * ** *** ** ** * * consensus_5589#0 CNTCTNATTTGACGGTAAAACAGTAAAGTGNACCCANGGGGANAAGGCAAGGCGAAGGCG 1129 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 CGGGAGTTATAGACGGCCAGANGTTNGCAATCCGAGCAGGCAAGGGCAAGGGGGAAGGAA 1189 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 TAGGGCCA 1197 consensus_5589#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||