These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 585 fasta sequence [CCGCGAGCCCGCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCCAGCTTTCCCACAGGGGAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAGTTTTATTTAATTGTGTGATTTTTGTCTAGTGAAAGAAGCGGAATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTAATAAGCTGAACGCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTCGAGTGGCTTTGATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAAAGGGGCGACAATAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTAGACCACCGGAACACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTATCCTTCGGACCGGCCACTTTATGGCT-GTTTGTTTGTGCCGCGCTTGATGCGGCACTGATGACCAACGCTCAGTATGCAGGGTGTGACTACACGATCGATGTCGCTAGCGGGCAGTC] [+] EMBL BM584477 [CCGCGAGCATCCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCCAGCTTTCCCACAGGGGAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAGTTTTATTTAATTGTGTGATTTTTGTCTAGTGAAAGAAGCGGAATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTAATAAGCTGAACGCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTCGAGTGGCTTTGATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAAAGGGGCGACAATAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTAGACCACCGGAACACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTATCCTTCGGACCGGCCACTTTATGGCT Gg ] [+] EMBL BM596425 [ CCGCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCCAGCTTTCCCACAGGGGAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAGTTTTATTTAATTGTGTGATTTTTGTCTAGTGAAAGAAGCGGAATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTAATAAGCTGAACGCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTCGAGTGGCTTTGATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAAAGGGGCGACAATAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTAGACCACCGGAACACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTATCCTTCGGACCGGCCACTTTATGGCT GTTTGTTTGTGCCGCGCTTGATGCGGCACTGATGACCAACGCTCAGTATGCAGGGTGTGACTACACGATCGATGTCGCTAGCGGGCAGTC] [+] EMBL BM589687 [ CCGCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCCAGCTTTCCCACAGGGGAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAGTTTTATTTAATTGTGTGATTTTTGTCTAGTGAAAGAAGCGGAATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTAATAAGCTGAACGCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTCGAGTGGCTTTGATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAAAGGGGCGACAATAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTAGACCACCGGAACACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTATCCTTCGGACCGGCCCCTTTATGGCTGGTTTGTTTGTGCCGCGCTTGATGCGGCACTGATGACCAACGCTCAGTATGCAGGGTGTGACTACACGATCGA ] consensusID : consensus_5592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [CCGGAGCATCCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCAGCCAGCTTTCCCACAGGGGAAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAAAGTTTTATTTAATTGTGTGAATTTTTTGGTCCTAAGTGAAAGAAGCGGAATTAAACTGTGCGATTGTGTGAGCAAAGGACTAAAAAAAAACTAATAAGCTGAACGCTGAAT] [+] EMBL BM592660 [CCGGAGCATCCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCAGCCAGCTTTCCCACAGGGGAAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAAAGTTTTATTTAATTGTGTGAATTTTTTGGTCCTAAGTGAAAGAAGCGGAATTAAACTGTGCGATTGTGTGAGCAAAGGACTAAAAAAAAACTAATAAGCTGAACGCTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5592#0 CCGCGAGCCCGCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCC---C 57 consensus_5592#1 CCG-GAGCATCCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCAGCC 59 *** **** ********************************************* * consensus_5592#0 AGCTTTCCCACAGGGGA-GCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAG 116 consensus_5592#1 AGCTTTCCCACAGGGGAAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAG 119 ***************** ****************************************** consensus_5592#0 CAGTTCTTTTTTGGTGTCCGTA--GTTTTATTTAATTGTGTGATTTTT---GTCT--AGT 169 consensus_5592#1 CAGTTCTTTTTTGGTGTCCGTAAAGTTTTATTTAATTGTGTGAATTTTTTGGTCCTAAGT 179 ********************** ******************* **** *** *** consensus_5592#0 GAAAGAAGCGGAATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTA 229 consensus_5592#1 GAAAGAAGCGGAATTAAA-CTGTGCGA-TTGTGTGAGCAAA-GGACTAAAAAA-AAACTA 235 ****************** ******** ************* *********** ** *** consensus_5592#0 ATAAGCTGAACGCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTC 289 consensus_5592#1 ATAAGCTGAACGCTGAAT------------------------------------------ 253 ****************** consensus_5592#0 GAGTGGCTTTGATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAA 349 consensus_5592#1 ------------------------------------------------------------ consensus_5592#0 AGGGGCGACAATAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTA 409 consensus_5592#1 ------------------------------------------------------------ consensus_5592#0 GACCACCGGAACACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTA 469 consensus_5592#1 ------------------------------------------------------------ consensus_5592#0 TCCTTCGGACCGGCCACTTTATGGCTGTTTGTTTGTGCCGCGCTTGATGCGGCACTGATG 529 consensus_5592#1 ------------------------------------------------------------ consensus_5592#0 ACCAACGCTCAGTATGCAGGGTGTGACTACACGATCGATGTCGCTAGCGGGCAGTC 585 consensus_5592#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||