cluster # 5593

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5593 cluster # 5593 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5593#0 length = 1246 sequences # 3

consensus_5593#1 length = 618 sequences # 1

consensusID : consensus_5593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1246
fasta sequence

                              [CCGCGCTTGGCATTGTCTCGAGAGTGCCCGAGAGCTACACGGGGTTCACCTGCACCACATCCGGAGAACTGGGAAAAGGGAAAACAATAGGAAGCGGATTCTAGCGATTGCCGACCGAGCTGGAAAAGAAGACAGGCAGGATGTCGTCAAAAAACATACCAGCTGATAAGATAAATCTGCGACTAATACTCGTCAGTGGCAAGACGAAAGAATTCCTCTTCAGTCAGACGGACTCAGCCGGCGACATAGCACTCACAGTATTCGAAAATTGGCCCGATGATTGGGAAGCGGAAGCGGTAGCCAAGGCCGAAATCTTAAGACTAATATACCAGGGACGCTTTCTACACTGCAACGTAACGTTAGGGGCGCTGGGGCTACCATTAGGCAAAACAACCGTGATGCACTTGGTACCGCGTGATAATTTACCCGAGCCAAACTCACAGGACCAGCGACAAAAGAGCAAAGGCGGTTCCAGTAGATGTTGTTCCACGAGTTGTTGTATACTGTAACCACCATCACGACGACGAAGAGATGACACAGGTGCTGCTCCGGATCGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCGGACTATATGCAGCTACATAGAGGGGCGGAGAGAACAAGTGAACGTTGAATCATCGATTGGAGGCGATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCGAGGAACCAATAACGTCACCGAGAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGTATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTATATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCGGGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCCCGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAAGCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCATGTAGCCCCGAGAGTAGCGCCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGAATTTCCGTAAATGTTATTATTAGAGAGATAGANAGAGAGAGGGATAGAGTGTGGGGAA]

[+] EMBL BM602922             [CCGCGCTTGGCATTGTCTCGAGAGTGCCCGAGAGCTACACGGGGTTCACCTGCACCACATCCGGAGAACTGGGAAAAGGGAAAACAATAGGAAGCGGATTCTAGCGATTGCCGACCGAGCTGGAAAAGAAGACAGGCAGGATGTCGTCAAAAAACATACCAGCTGATAAGATAAATCTGCGACTAATACTCGTCAGTGGCAAGACGAAAGAATTCCTCTTCAGTCAGACGGACTCAGCCGGCGACATAGCACTCACAGTATTCGAAAATTGGCCCGATGATTGGGAAGCGGAAGCGGTAGCCAAGGCCGAAATCTTAAGACTAATATACCAGGGACGCTTTCTACACTGCAACGTAACGTTAGGGGCGCTGGGGCTACCATTAGGCAAAACAACCGTGATGCACTTGGTACCGCGTGATAATTTACCCGAGCCAAACTCACAGGACCAGCGACAAAAGAGCAAAGGCGGTTCCAGTAGATGTTGTTCCACGAGTTGTTGTATACTGTAACCACCATCACGACGACGAAGAGATGACACAGGTGCTGCTCCGGATCGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM584613             [                                                                                             cCGGATTCTAGCGATTGCCGACCGAGCTGGAAAAGAAGACAGGCAGGATGTCGTCAAAAAACATACCAGCTGATAAGATAAATCTGCGACTAATACTCGTCAGTGGCAAGACGAAAGAATTCCTCTTCAGTCAGACGGACTCAGCCGGCGACATAGCACTCACAGTATTCGAAAATTGGCCCGATGATTGGGAAGCGGAAGCGGTAGCCAAGGCCGAAATCTTAAGACTAATATACCAGGGACGCTTTCTACACTGCAACGTAACGTTAGGGGCGCTGGGGCTACCATTAGGCAAAACAACCGTGATGCACTTGGTACCGCGTGATAATTTACCCGAGCCAAACTCACAGGACCAGCGACAAAAGAGCAAAGGCGGTTCCAGTAGATGTTGTTCCACGAGTTGTTGTATACTGTAACCACCATCACGACGACGAAGAGATGACACAGGTGCTGCTCCGGATCGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCGGACTATATGCAGCTACATAGAGGGGCGGAGAGAACAAGTGAACGTTGAATCATCGATTGGAGGCGATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX620291             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCCGGAACGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCGGACTATATGCAGCTACATAGAGGGGCGGAGAGAACAAGTGAACGTTGANTCATCGATTGGAGGCGATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCGAGGAACCAATAACGTCACCGAGAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGTATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTATATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCGGGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCCCGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAAGCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCATGTAGCCCCGAGAGTAGCGCCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGAATTTCCGTAAATGTTATTATTAGAGAGATAGANAGAGAGAGGGATAGAGTGTGGGGAA]




>consensus_5593#0
CCGCGCTTGGCATTGTCTCGAGAGTGCCCGAGAGCTACACGGGGTTCACCTGCACCACAT
CCGGAGAACTGGGAAAAGGGAAAACAATAGGAAGCGGATTCTAGCGATTGCCGACCGAGC
TGGAAAAGAAGACAGGCAGGATGTCGTCAAAAAACATACCAGCTGATAAGATAAATCTGC
GACTAATACTCGTCAGTGGCAAGACGAAAGAATTCCTCTTCAGTCAGACGGACTCAGCCG
GCGACATAGCACTCACAGTATTCGAAAATTGGCCCGATGATTGGGAAGCGGAAGCGGTAG
CCAAGGCCGAAATCTTAAGACTAATATACCAGGGACGCTTTCTACACTGCAACGTAACGT
TAGGGGCGCTGGGGCTACCATTAGGCAAAACAACCGTGATGCACTTGGTACCGCGTGATA
ATTTACCCGAGCCAAACTCACAGGACCAGCGACAAAAGAGCAAAGGCGGTTCCAGTAGAT
GTTGTTCCACGAGTTGTTGTATACTGTAACCACCATCACGACGACGAAGAGATGACACAG
GTGCTGCTCCGGATCGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCGGAC
TATATGCAGCTACATAGAGGGGCGGAGAGAACAAGTGAACGTTGAATCATCGATTGGAGG
CGATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCAT
GTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCGAGGAACCAATAACGTCACCG
AGAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGTATTTCCCGTAGG
ATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTATATTCTATGCAT
GTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCGGGTGCGTAGTTT
GTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCCCGCCAGCAACAC
CCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAAGCTTTGCAAAGA
TTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCATGTAGCCCCGAGA
GTAGCGCCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGAATTTCCGTAAAT
GTTATTATTAGAGAGATAGANAGAGAGAGGGATAGAGTGTGGGGAA

consensusID : consensus_5593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGGCCGGCGGACCATATGCAGCTACATAGAGGGGCGGAGAGCGAGAGAGAGAGAGCAAGTGAACGTTGAATCATCGATTGGAGGCAATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCAAGGAACCAATAACGTCACCGAAAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGTATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTATATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCGGGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCCCGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAAGCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCATGTAGCCCCGAGAGTAGCGCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGAATTTCG]

[+] EMBL BM624353             [CCGGCCGGCGGACCATATGCAGCTACATAGAGGGGCGGAGAGCGAGAGAGAGAGAGCAAGTGAACGTTGAATCATCGATTGGAGGCAATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCAAGGAACCAATAACGTCACCGAAAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGTATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTATATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCGGGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCCCGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAAGCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCATGTAGCCCCGAGAGTAGCGCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGAATTTCG]




>consensus_5593#1
CCGGCCGGCGGACCATATGCAGCTACATAGAGGGGCGGAGAGCGAGAGAGAGAGAGCAAG
TGAACGTTGAATCATCGATTGGAGGCAATTGATCTGATATGTTGTGTACATTGTGTCATG
TTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGG
AAGCAAGGAACCAATAACGTCACCGAAAGAATGGCACCGAATAGCAAAGTGTTGTTGTTA
TTTGGTTGTTCGTATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCA
ACGGTGGGGTCTATATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGAT
AGTAGTGGATGCGGGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATA
GAGGAATAGCCCCCGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCA
GTCGGCTTCAAAAGCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCA
AACGCGACGTCATGTAGCCCCGAGAGTAGCGCCGTTGTGTTGTGGCGCTTTTGTATTATT
AGGAAGCAGCGAATTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5593#0      CCGCGCTTGGCATTGTCTCGAGAGTGCCCGAGAGCTACACGGGGTTCACCTGCACCACAT 60
consensus_5593#1      ------------------------------------------------------------
                                                                                  

consensus_5593#0      CCGGAGAACTGGGAAAAGGGAAAACAATAGGAAGCGGATTCTAGCGATTGCCGACCGAGC 120
consensus_5593#1      ------------------------------------------------------------
                                                                                  

consensus_5593#0      TGGAAAAGAAGACAGGCAGGATGTCGTCAAAAAACATACCAGCTGATAAGATAAATCTGC 180
consensus_5593#1      ------------------------------------------------------------
                                                                                  

consensus_5593#0      GACTAATACTCGTCAGTGGCAAGACGAAAGAATTCCTCTTCAGTCAGACGGACTCAGCCG 240
consensus_5593#1      ------------------------------------------------------------
                                                                                  

consensus_5593#0      GCGACATAGCACTCACAGTATTCGAAAATTGGCCCGATGATTGGGAAGCGGAAGCGGTAG 300
consensus_5593#1      ------------------------------------------------------------
                                                                                  

consensus_5593#0      CCAAGGCCGAAATCTTAAGACTAATATACCAGGGACGCTTTCTACACTGCAACGTAACGT 360
consensus_5593#1      ------------------------------------------------------------
                                                                                  

consensus_5593#0      TAGGGGCGCTGGGGCTACCATTAGGCAAAACAACCGTGATGCACTTGGTACCGCGTGATA 420
consensus_5593#1      ------------------------------------------------------------
                                                                                  

consensus_5593#0      ATTTACCCGAGCCAAACTCACAGGACCAGCGACAAAAGAGCAAAGGCGGTTCCAGTAGAT 480
consensus_5593#1      ------------------------------------------------------------
                                                                                  

consensus_5593#0      GTTGTTCCACGAGTTGTTGTATACTGTAACCACCATCACGACGACGAAGAGATGACACAG 540
consensus_5593#1      ------------------------------------------------------------
                                                                                  

consensus_5593#0      GTGCTGCTCCGGATCGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCGGAC 600
consensus_5593#1      -----------------------------------------------CCGGCCGGCGGAC 13
                                                                     *  **********

consensus_5593#0      TATATGCAGCTACATAGAGGGGCGGAGAG------------AACAAGTGAACGTTGAATC 648
consensus_5593#1      CATATGCAGCTACATAGAGGGGCGGAGAGCGAGAGAGAGAGAGCAAGTGAACGTTGAATC 73
                       ****************************            * *****************

consensus_5593#0      ATCGATTGGAGGCGATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACA 708
consensus_5593#1      ATCGATTGGAGGCAATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACA 133
                      ************* **********************************************

consensus_5593#0      ACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCGAGGAACCA 768
consensus_5593#1      ACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCAAGGAACCA 193
                      *************************************************** ********

consensus_5593#0      ATAACGTCACCGAGAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGT 828
consensus_5593#1      ATAACGTCACCGAAAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGT 253
                      ************* **********************************************

consensus_5593#0      ATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTA 888
consensus_5593#1      ATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTA 313
                      ************************************************************

consensus_5593#0      TATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCG 948
consensus_5593#1      TATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCG 373
                      ************************************************************

consensus_5593#0      GGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCC 1008
consensus_5593#1      GGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCC 433
                      ************************************************************

consensus_5593#0      CGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAA 1068
consensus_5593#1      CGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAA 493
                      ************************************************************

consensus_5593#0      GCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCAT 1128
consensus_5593#1      GCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCAT 553
                      ************************************************************

consensus_5593#0      GTAGCCCCGAGAGTAGCGCCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGA 1188
consensus_5593#1      GTAGCCCCGAGAGTAGCGCC-GTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGA 612
                      ******************** ***************************************

consensus_5593#0      ATTTCCGTAAATGTTATTATTAGAGAGATAGANAGAGAGAGGGATAGAGTGTGGGGAA 1246
consensus_5593#1      ATTTCG---------------------------------------------------- 618
                      *****