cluster # 5606

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Anopheles gambiae
cluster # 5606 cluster # 5606 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5606#0 length = 765 sequences # 3

consensus_5606#1 length = 389 sequences # 1

consensusID : consensus_5606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 765
fasta sequence

                              [TTTGGAGACGGACTTAAGAAGATCGTCCTCCTTACAAACTTTCTTTTGCTCAGTACTTTGTTATATTATTCCTTTTAGTAGTTCTTGGCGCCAGAACAAACGTCTTACCCTTGCGTGCAATGTCAGTAAGCACATAAACGCATAATGTGACATTTCTCATAGGCGAAAGAAGTTCGGCTTCGGTGTTTCCGCTCACTCCGTCGCGATGTATTATGATTCATTCCATAGTAAAACGATAGTCGATTTTATTTTATATAGTTTTTATTTTACCTGCGTTGCCGTTTCGGTTCGTCAGGATTAGCATCGTCGACGCGGACAGACTATACGTTCACATACATGGCAAAAGGAAAAATTCTGAAACTCGTAAATGAAATCTAGTAGAAAGAAAAGATAAGAAGGCGGTGAAGTGTGGGGGCAGCATACATTTCTATGCACTATTGGCGCACAGTTTA-GTGGTGAGGCAAACGAGGAAGAAAGAGCAACAATGTAGCATAACAATAAGACAAAATAAAAAGGAAAACAAAAAGGAAAAATCATGACTTCATGTTGCTGTAGAACATCCAGGATTGCGCAAGTGCAGAAGCAGCGTGAAAATGGAAACGGTGTGTGATGGTTAATGTTAGGAAAAGCTAATGAAATGAATAAGCAAGTCGAAACAAAAGTGTAACAGCGCGTATACAACACAACGTCGTACGCAAGGAAATATTGTGTAATATTAAATACATTTGAAAAGTATATATGATACAATAAAAAATGTAACTAAAA]

[+] EMBL BX614872             [TTTGGAGACGGACTTAAGAAGATCGTCCTCCTTACAAACTTTCTTTTGCTCAGTACTTTGTTATATTATTCCTTTTAGTAGTTCTTGGCGCCAGAACAAACGTCTTACCCTTGCGTGCAATGTCAGTAAGCACATAAACGCATAATGTGACATTTCTCATAGGCGAAAGAAGTTCGGCTTCGGTGTTTCCGCTCACTCCGTCGCGATGTATTATGATTCATTCCATAGTAAAACGATAGTCGATTTTATTTTATATAGTTTTTATTTTACCTGCGTTGCCGTTTCGGTTCGTCAGGATTAGCATCGTCGACGCGGACAGACTATACGTTCACATACATGGCAAAAGGAAAAATTCTGAAACTCGTAAATGAAATCTAGTAGAAAGAAAAGATAAGAAGGCGGTGAAGTGTGGGGGCAGCATACATTTCTATGCACTATTGGCGCACAGTTTA GTGGTGAGGCAAACGAGGAAGAAAGAGCAACAATGTAGCATAACAATAAGACAAAATAAAAAGGAAAACAAAAAGGAAAAATCATGACTTCATGTTGCTGTAGAACATCCAGGATTGCGCAAGTGCAGAAGCAGCG                                                                                                                                                                                 ]
[+] EMBL BX609007             [                                                                      CCTTTTAGTAGTTCTTGGCGCCAGAACAAACGTCTTACCCTTGCGTGCAATGTCAGTAAGCACATAAACTCATAATGTGACATTTCTCATAGGCGAAAGAAGTTCGGCTTCGGTGTTTCCGCTCACTCCGTCGCGATGTATTATGATTCTTTCCATAGTAAAACGATAGTCGATTTTATTTTATATAGTTTTTATTTTACCTGCGTTGCCGTTTCGGTTCGTCAGGATTAGCATCGTCGACGCGGACAGACTATACGTTCACATACATGGCAAAAGGAAAAATTCTGAAACTCGTAAATGAAATCTAGTAGAAAGAAAAGATAAGAAGGCGGTGAAGTGTGGGGGCAGCATACATTTCTATGCACTATTGGCGCACAGTTTA GTGGTGAGGCAAACGAGGAAGAAAGAGCAACAATGTAGCATAACAATAAGACAAAATAAAAAGGAAAACAAAAAGGAAAAATCATGACTTCATGTTGCTGTAGAACATCCAGGATTGCGCAAGTGCAGAAGCAGCGTGAAAATGGAAACGGTGTGTGATGGTTAATGTTAGGAAAAGCTAATGAAATGAATAAGCAAGTCGAAACAAAAGTGTAACAGCGCGTATACAACACAACGTCGTACGCAAGGAAATATTGTGTAATATTAAATACATTTGAAAAGTATATATGATACAATAAAAAATGTAACTAAAA]
[+] EMBL BX614446             [                                                                                                         TACCCTTGCGTGCAATGTCAGTAAGCACATAAACGCATAATGTGACATTTCTCATAGGCGAAAGAAGTTCGTCTTCGGTGTTTCCGCTCACTCCGTCGCGATGTATTATGATTCATTCCATAGTAAAACGATAGTCGATTTTATTTTATATAGTTTTTATTTTACCTGCGTTGCCGTTTCGGTTCGTCAGGATTAGCATCGTCGACGCGGACAGACTATACGTTCACATACATGGGAAAAGGAAAAATTCTGAAACTCGTAAATGAAATCTAGTAGAAAGAAAAGATAAGAAGGCGGTGAAATGTGGGGGCAGCATACATTTCTATGCACTATTGGCGCACAGTTTAGGTGGTGAGGCAAACGAGGAAGAAAGAGCAACA                                                                                                                                                                                                                                                                                         ]




>consensus_5606#0
TTTGGAGACGGACTTAAGAAGATCGTCCTCCTTACAAACTTTCTTTTGCTCAGTACTTTG
TTATATTATTCCTTTTAGTAGTTCTTGGCGCCAGAACAAACGTCTTACCCTTGCGTGCAA
TGTCAGTAAGCACATAAACGCATAATGTGACATTTCTCATAGGCGAAAGAAGTTCGGCTT
CGGTGTTTCCGCTCACTCCGTCGCGATGTATTATGATTCATTCCATAGTAAAACGATAGT
CGATTTTATTTTATATAGTTTTTATTTTACCTGCGTTGCCGTTTCGGTTCGTCAGGATTA
GCATCGTCGACGCGGACAGACTATACGTTCACATACATGGCAAAAGGAAAAATTCTGAAA
CTCGTAAATGAAATCTAGTAGAAAGAAAAGATAAGAAGGCGGTGAAGTGTGGGGGCAGCA
TACATTTCTATGCACTATTGGCGCACAGTTTAGTGGTGAGGCAAACGAGGAAGAAAGAGC
AACAATGTAGCATAACAATAAGACAAAATAAAAAGGAAAACAAAAAGGAAAAATCATGAC
TTCATGTTGCTGTAGAACATCCAGGATTGCGCAAGTGCAGAAGCAGCGTGAAAATGGAAA
CGGTGTGTGATGGTTAATGTTAGGAAAAGCTAATGAAATGAATAAGCAAGTCGAAACAAA
AGTGTAACAGCGCGTATACAACACAACGTCGTACGCAAGGAAATATTGTGTAATATTAAA
TACATTTGAAAAGTATATATGATACAATAAAAAATGTAACTAAAA

consensusID : consensus_5606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [TTAAGAAGATCGTCCTCCTTACAAACTTTCTTTTGCTCAGTACTTTGTTATATTATTCCTTTTAGTAGTTCTTGGCGCCAGAACAAACGTCTTACCCTTGCGTGCAATGTCAGTAAGCACATAAACGCATAATGTGACATTTCTCATAGGCGAAAGAAGTTCGGCTTCGGTGTTTCCGCTCACTCCGTCGCGATGTATTATGATTCATTCCATAGTAAAACGATAGTCGATTTTATTTTATATAGTTTTTATTTTACCTGCGTTGCCGTTTCGGTTCGTCAGGATTAGCATCGTCGACGCGGACAGACTATACACAATATACACACATTCGTCGTACCCTTACGGAGTGGATTGCATACGTTCACATACATGGCAAAAGGAAAAATTCT]

[+] EMBL BM585786             [TTAAGAAGATCGTCCTCCTTACAAACTTTCTTTTGCTCAGTACTTTGTTATATTATTCCTTTTAGTAGTTCTTGGCGCCAGAACAAACGTCTTACCCTTGCGTGCAATGTCAGTAAGCACATAAACGCATAATGTGACATTTCTCATAGGCGAAAGAAGTTCGGCTTCGGTGTTTCCGCTCACTCCGTCGCGATGTATTATGATTCATTCCATAGTAAAACGATAGTCGATTTTATTTTATATAGTTTTTATTTTACCTGCGTTGCCGTTTCGGTTCGTCAGGATTAGCATCGTCGACGCGGACAGACTATACACAATATACACACATTCGTCGTACCCTTACGGAGTGGATTGCATACGTTCACATACATGGCAAAAGGAAAAATTCT]




>consensus_5606#1
TTAAGAAGATCGTCCTCCTTACAAACTTTCTTTTGCTCAGTACTTTGTTATATTATTCCT
TTTAGTAGTTCTTGGCGCCAGAACAAACGTCTTACCCTTGCGTGCAATGTCAGTAAGCAC
ATAAACGCATAATGTGACATTTCTCATAGGCGAAAGAAGTTCGGCTTCGGTGTTTCCGCT
CACTCCGTCGCGATGTATTATGATTCATTCCATAGTAAAACGATAGTCGATTTTATTTTA
TATAGTTTTTATTTTACCTGCGTTGCCGTTTCGGTTCGTCAGGATTAGCATCGTCGACGC
GGACAGACTATACACAATATACACACATTCGTCGTACCCTTACGGAGTGGATTGCATACG
TTCACATACATGGCAAAAGGAAAAATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5606#0      TTTGGAGACGGACTTAAGAAGATCGTCCTCCTTACAAACTTTCTTTTGCTCAGTACTTTG 60
consensus_5606#1      -------------TTAAGAAGATCGTCCTCCTTACAAACTTTCTTTTGCTCAGTACTTTG 47
                                   ***********************************************

consensus_5606#0      TTATATTATTCCTTTTAGTAGTTCTTGGCGCCAGAACAAACGTCTTACCCTTGCGTGCAA 120
consensus_5606#1      TTATATTATTCCTTTTAGTAGTTCTTGGCGCCAGAACAAACGTCTTACCCTTGCGTGCAA 107
                      ************************************************************

consensus_5606#0      TGTCAGTAAGCACATAAACGCATAATGTGACATTTCTCATAGGCGAAAGAAGTTCGGCTT 180
consensus_5606#1      TGTCAGTAAGCACATAAACGCATAATGTGACATTTCTCATAGGCGAAAGAAGTTCGGCTT 167
                      ************************************************************

consensus_5606#0      CGGTGTTTCCGCTCACTCCGTCGCGATGTATTATGATTCATTCCATAGTAAAACGATAGT 240
consensus_5606#1      CGGTGTTTCCGCTCACTCCGTCGCGATGTATTATGATTCATTCCATAGTAAAACGATAGT 227
                      ************************************************************

consensus_5606#0      CGATTTTATTTTATATAGTTTTTATTTTACCTGCGTTGCCGTTTCGGTTCGTCAGGATTA 300
consensus_5606#1      CGATTTTATTTTATATAGTTTTTATTTTACCTGCGTTGCCGTTTCGGTTCGTCAGGATTA 287
                      ************************************************************

consensus_5606#0      GCATCGTCGACGCGGACAGACTATACGTT-CACATACATGGCAAAAGGAAAAATTCTGAA 359
consensus_5606#1      GCATCGTCGACGCGGACAGACTATACACAATATACACACATTCGTCGTACCCTTACGGAG 347
                      **************************     * * ***        * *    * * ** 

consensus_5606#0      ACTCGTAAATGAAATCTAGTAGAAAGAAAAGATAAGAAGGCGGTGAAGTGTGGGGGCAGC 419
consensus_5606#1      TGGATTGCATACGTTCACATACATGGCAAAAGGAAAAATTCT------------------ 389
                           *  **    **   ** *  * ***   ** **  *                   

consensus_5606#0      ATACATTTCTATGCACTATTGGCGCACAGTTTAGTGGTGAGGCAAACGAGGAAGAAAGAG 479
consensus_5606#1      ------------------------------------------------------------
                                                                                  

consensus_5606#0      CAACAATGTAGCATAACAATAAGACAAAATAAAAAGGAAAACAAAAAGGAAAAATCATGA 539
consensus_5606#1      ------------------------------------------------------------
                                                                                  

consensus_5606#0      CTTCATGTTGCTGTAGAACATCCAGGATTGCGCAAGTGCAGAAGCAGCGTGAAAATGGAA 599
consensus_5606#1      ------------------------------------------------------------
                                                                                  

consensus_5606#0      ACGGTGTGTGATGGTTAATGTTAGGAAAAGCTAATGAAATGAATAAGCAAGTCGAAACAA 659
consensus_5606#1      ------------------------------------------------------------
                                                                                  

consensus_5606#0      AAGTGTAACAGCGCGTATACAACACAACGTCGTACGCAAGGAAATATTGTGTAATATTAA 719
consensus_5606#1      ------------------------------------------------------------
                                                                                  

consensus_5606#0      ATACATTTGAAAAGTATATATGATACAATAAAAAATGTAACTAAAA 765
consensus_5606#1      ----------------------------------------------