These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1215 fasta sequence [ATCGCACNGAAACACCTGCCCCCGCTCGTTGTGCAGGAAGCGAATGTGCTTGTTCAGATNGTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGCTCCAGCCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGTGCACCTTGAGGGCGTAATTGCTCGACAGCACCTTCTTGCAGACGTGGCACTCCGCCTGCACGTGCATCAGCTGGTGCGACCGGAGCAGATACTGCTTCGGATAGGCCAGCCCGCACTGGTCGCACTTGAACGGGCGCTCCTCCTCCGTGCCGTGGCTTTTGGCCATGTGCAGCGCCAGGTAGCGCTTCGTTTTGTACGTTCTGTCGCACACCTCGCACCGGATCGTTCCCCGATGCACCGCGATATGGTCGAGCAGCGTGTAGCGATGGAAGAGCTGCTTGTTGCAGCACCGTATATAGCCGC-GGGTGTCGTGCACCAGCTGGTAGTGCTCCTGCAGCTGCACAAAGTCATCCAACAGGATGGAGCAGATTTCGCACTCCAGCGTGTAGAACTCCTTGATCCGGTCGTCTTTCTCCTGCTGCCGAGCCGCCCCATTCCCTTCCGATTTGTCTTTGCCTCGCTCCGTGCTCTCCTCCTTTCGCTCCTTTCGCTCCTTTCGTTCGCGCGCTTTACGACGGACCTTGCGCCGGGTCGCCACGACGTACTCATCGTCCGTGCTCGCATCCAAGTCCGATTCCGACTGGGCCGTAATGCTTCCATCGTACTCTTCCTTCACATCCACACACTCAATGCCCGGCGGCAGCTCCTCCAGCCTTTCCGCTGGCATGATTTCAATCTGAAGGTCCGGCTCTACCTTGACCGGTTCCGGCTCAACATCCGTATCCTTGGCCAGCTCTAACCGTAGCTGGCGCTGGTTCGCCTCCACCTGCTGGCTGTACACGTGAAACTCGGCCACTGTCGTTTGGCACTGCTGGCATACCTGTTCCGGTAAGGGCTCTTCCGTCGAGATCTCGAATAAAAACACATTTCGCAGCTTTTGCTGAAACGACTCGTCCACTATCGAGACGGCGATGGCACACTGCACTTCCTCCAAACACAGGCGACACTTTTCATTCATTTTATTCGCAATGCTGCGCTATCGCTCCGG] [-] EMBL BX627459 [ATCGCACNGAAACACCTGCCCCCGCTCGTTGTGCAGGAAGCGAATGTGCTTGTTCAGATNGTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGCTCCAGCCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGTGCACCTTGAGGGCGTAATTGCTCGACAGCACCTTCTTGCAGACGTGGCACTCCGCCTGCACGTGCATCAGCTGGTGCGACCGGAGCAGATACTGCTTCGGATAGGCCAGCCCGCACTGGTCGCACTTGAACGGGCGCTCCTCCTCCGTGCCGTGGCTTTTGGCCATGTGCAGCGCCAGGTAGCGCTTCGTTTTGTACGTTCTGTCGCACACCTCGCACCGGATCGTTCCCCGATGCACCGCGATATGGTCGAGCAGCGTGTAGCGATGGAAGAGCTGCTTGTTGCAGCACCGTATATAGCCGC GGGTGTCGTGCACCAGCTGGTAGTGCTCCTGCAGCTGCACAAAGTCATCCAACAGGATGGAGCAGATTTCGCACTCCAGCGTGTAGAACTCCTTGATCCGGTCG ] [-] EMBL BX607227 [ AGATTGTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGCTCCAGCCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGTGCACCTTGAGGGCGTAATTGCTCGACAGCACCTTCTTGCAGACGTGGCACTCCGCCTGCACGTGCATCAGCTGGTGCGACCGGAGCAGATACTGCTTCGGATAGGCCAGCCCGCACTGGTCGCACTTGAACGGGCGCTCCTCCTCCGTGCCGTGGCTTTTGGCCATGTGCAGCGCCAGGTAGCGCTTCGTTTTGTACGTTCTGTCGCACACCTCGCACCGGATCGTTCCCCGATGCACCGCGATATGGTCGAGCAGCGTGTAGCGATGGAAGAGCTGCTTGTTGCAGCACCGTATATAGCCGC GGGTGTCGTGCACCAGCTGGTAGTGCTCCTGCAGCTGCACAAAGTCATCCAACAGGATGGAGCAGATTTCGCA ] [-] EMBL BM586743 [ GTATATAGCCCCGGGGTGTCGTGCACTAGCTGGTAGTGCTCCTGCAGCTGCACAAAGTCATCCAACAGGATGGAGCAGATTTCGCACTCCAGGGTGTAGAACTCCTTGATCCGGTCGTCTTTCTCCTGCTGCCGAGCCGCCCCATTCCCTTCCGATTTGTCTTTGCCTCGCTCCGTGCTCTCCTCCTTTCGCTCCTTTCGCTCCTTTCGTTCGCGCGCTTTACGACGGACCTTGCGCCGGGTCGCCACGACGTACTCATCGTCCGTGCTCGCATCCAAGTCCGATTCCGACTGGGCCGTAATGCTTCCATCGTACTCTTCCTTCACATCCACACACTCAATGCCCGGCGGCAGCTCCTCCAGCCTTTCCGCTGGCATGATTTCAATCTGAAGGTCCGGCTCTACCTTGACCGGTTCCGGCTCAACATCCGTATCCTTGGCCAGCTCTAACCGTAGCTGGCGCTGGTTCGCCTCCACCTGCTGGCTGTACACGTGAAACTCGGCCACTGTCGTTTGGCACTGCTGGCATACCTGTTCCGGTAAGGGCTCTTCCGTCGAGATCTCGAATAAAAACACATTTCGCAGCTTTTGCTGAAACGACTCGTCCACTATCGAGACGGCGATGGCACACTGCACTTCCTCCAAACACAGGCGACACTTTTCATTCATTTTATTCGCAATGCTGCGCTATCGCTCCGG] consensusID : consensus_5613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 824 fasta sequence [CGATTAATCACTTTTCTTGAAGTCGACAAGTAAAATAGCATAACTACTGGGGAACAATCGTTTAATGCCAATTGGCAATGTGCTAAAAATAAGAACGCATTTCTAATGTCTTTGAATAACGAATTGGAACGTTCGCCTATCACTCTAGCGTTTTTCTAACTAAGAGCGGAAAATAATTCACCTATTAATAGCGCCTTTTCTTCACCATTTAATACGCTAATCAAACTCAAGATCCTGCTGCCCTGCAAACCGACCTCAATGCTTGCTCATCTTCTTCAGCATCCGCATTCGCTTGTGCGCTTCCCATTCCTCCGGGTGCTTGTTTTTCCGATGCGTAAAATGGTTCGCGTGCGAGTTAAACTTCATCCCGCAGTACTCGCACGTGTACAGTGGCACGTTCGTGTGCGACGCAATGTGCTCGCGCAGATACAGCTTCCGCTTGAACCGCTTGCCGCACAGCTCACACTCGTGCTTTTCCTGCACATGCACCCGCTGCTTGTGGTACGACAGGGCCCGGCTGTTCGGGCTCTCGTGCGCACACAGATCGCAACGAAACACCTGCCCCCGCTCGTTGTGCAGGAAGCGAATGTGCTTGTTCAGATTGTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGTTCCAGCCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGGGCACCTTGAGGGCGTAATTGCTCCTTTCGCTCCTTTCGTTCGCGCGCTTTACGA] [+] EMBL CNS08GPK [CGATTAATCACTTTTCTTGAAGTCGACAAGTAAAATAGCATAACTACTGGGGAACAATCGTTTAATGCCAATTGGCAATGTGCTAAAAATAAGAACGCATTTCTAATGTCTTTGAATAACGAATTGGAACGTTCGCCTATCACTCTAGCGTTTTTCTAACTAAGAGCGGAAAATAATTCACCTATTAATAGCGCCTTTTCTTCACCATTTAATACGCTAATCAAACTCAAGATCCTGCTGCCCTGCAAACCGACCTCAATGCTTGCTCATCTTCTTCAGCATCCGCATTCGCTTGTGCGCTTCCCATTCCTCCGGGTGCTTGTTTTTCCGATGCGTAAAATGGTTCGCGTGCGAGTTAAACTTCATCCCGCAGTACTCGCACGTGTACAGTGGCACGTTCGTGTGCGACGCAATGTGCTCGCGCAGATACAGCTTCCGCTTGAACCGCTTGCCGCACAGCTCACACTCGTGCTTTTCCTGCACATGCACCCGCTGCTTGTGGTACGACAGGGCCCGGCTGTTCGGGCTCTCGTGCGCACACAGATCGCAACGAAACACCTGCCCCCGCTCGTTGTGCAGGAAGCGAATGTGCTTGTTCAGATTGTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGTTCCAGCCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGGGCACCTTGAGGGCGTAATTGCTCCTTTCGCTCCTTTCGTTCGCGCGCTTTACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5613#0 ATCGCACNGAAACACCTGCCCCCGCTCGTTGTGCAGGAAGCGAATGTGCTTGTTCAGATN 60 consensus_5613#1 ------------------------------------------------------------ consensus_5613#0 GTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGCTCCAG 120 consensus_5613#1 ------------------------------------------------------------ consensus_5613#0 CCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCA 180 consensus_5613#1 ------------------------------------------------------------ consensus_5613#0 CGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGTGCACCTTGAGGGC 240 consensus_5613#1 ------------------------------------------------------------ consensus_5613#0 GTAATTGCTCGACAGCACCTTCTTGCAGACGTGGCACTCCGCCTGCACGTGCATCAGCTG 300 consensus_5613#1 ------------------------------------------------------------ consensus_5613#0 GTGCGACCGGAGCAGATACTGCTTCGGATAGGCCAGCCCGCACTGGTCGCACTTGAACGG 360 consensus_5613#1 --------CGATTAATCACTTTTCTTGA--AGTCGACAAGTAA-AATAGCAT---AACTA 46 ** * *** * ** * * * * * * *** *** consensus_5613#0 GCGCTCCTCCTCCGTGCCGTGGCTTTTGGCCATGTGCAGCGCCAGGTAGCGCTTCGTTTT 420 consensus_5613#1 CTGGGGAACAATCGTTTAATGCCAATTGGCAATGTGCTAA---AAATAAGAACGCATTTC 103 * * *** ** * ***** ****** * ** * *** consensus_5613#0 GTACGTTCTGTCGCACACCTCGCACCGGATCGTTCCCCGATGCACCGCGATATGGTCGAG 480 consensus_5613#1 TAATGTCTT----TGAATAACGAATTGGAACGTTCGCCTAT-CACTCTAGCGTTTTT--C 156 * ** * * ** * *** ***** ** ** *** * * consensus_5613#0 CAGCGTGTAGCGATGGAAGAGCTGCTTGTTGCAGCACCGTATATAGCCGCGGGTGTCGTG 540 consensus_5613#1 TAACTAAGAGCGGAAAATAATTCACCTATT--------------AATAGCGCCTTTTCTT 202 * * **** * * * * ** * *** * * * consensus_5613#0 CACCAGCTGGTAGTGCTCCTGCAGCTGCACAAAGTCATCCAACAGGATGGAGCAGATTTC 600 consensus_5613#1 CACCATTTAATA-CGCTAATCAAACT---CAAGATCCTGCTGCCCTGCAAACCGACCTCA 258 ***** * ** *** * * ** *** ** * * * * * * consensus_5613#0 GCACTCCAGCGTGTAGAACTCCTTGATCCGGTCGTCTTTCTCCTGCTGCCGAGCCGCCCC 660 consensus_5613#1 ATGCT------TGCTCATCTTCTTCAGC--ATCCGCATTCGCTTG-TGCG----CTTCCC 305 ** ** * ** *** * * ** * *** * ** *** * *** consensus_5613#0 ATTCCCTTCCGATTTGTCTTTGCCTCGCTCCGTGCTCTCCTCCTTTCGCTCCTTTCGCTC 720 consensus_5613#1 ATTCC--TCCGGGTGCTTGTTTTTCCGATGCGTAAAATGGTTCGCGTGCGAGTTAAACTT 363 ***** **** * * ** ** * *** * * * ** ** ** consensus_5613#0 CTTTCGTTCGCGCGCTTTACGACGGACCTTGCGCCGGGTCGCCACGACGTACTCATCGTC 780 consensus_5613#1 CATCC---CGCAGTACTCGC-ACGTGTACAGTGGCACGT--TCGTGTGCGACGCAATGTG 417 * * * *** * * *** * * * ** * * ** ** ** consensus_5613#0 CGTGCTCGCATCCAAGTCCGATTCCGACTGG--GCCGTAATGCTTCCA-TCGTACTCTTC 837 consensus_5613#1 CTCGCGCAGATACAGCTTCCGCTTGAACCGCTTGCCGCACAGCTCACACTCGTGCTTTTC 477 * ** * ** ** * * * ** * **** * *** ** **** ** *** consensus_5613#0 CTTCACATCCACACACTCAATGCCCGGCGGCAGCTCCTCCAGCCTTTCCG---CTGGCAT 894 consensus_5613#1 CTGCACATGCACCCGCTGCTTGTGGTACGACAGGGC--CCGGCTGTTCGGGCTCTCGTGC 535 ** ***** *** * ** ** ** *** * ** ** *** * ** * consensus_5613#0 GATTTCAATCTGAAGGTCCGGCTCTACCTTGACCGGTTCCGGCTCAACATCCGTATCCTT 954 consensus_5613#1 GCACACAGATCGCAACGAAACACCTGCCCCCGCTCGTTGTG---CAGGAAGCGAATGT-- 590 * ** * * ** ** * *** * ** * ** ** consensus_5613#0 GGCCAGCTCTAACCGTAGCTGGCGCTGGTTCGCCTCCACCTGCTGGCTGTACACGTGAAA 1014 consensus_5613#1 -GCTTGTTCAGATTGTACTTCCCGTTGAACCACTT-------CTGGCAGTACTCGC--AC 640 ** * ** * *** * ** ** * * * ***** **** ** * consensus_5613#0 CTCGGCCACTGTCGTTTGGCACTGCTGGCATACCTGTTCCGGTAAGGGCTCTTCCGTCGA 1074 consensus_5613#1 TGCATCCGC--TCGATCGGTTCCAGCCCCATA--TGCTCCTTGATGTGCCGCTCCATCGC 696 * ** * *** * ** * **** ** *** * * ** *** *** consensus_5613#0 GATCTCGAATAAAAACACATT-TCGCAGCTTTTGCTGAAACGACTCGTCCACTATCGAGA 1133 consensus_5613#1 CGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTC--CCATCGTCGCTG 754 ** * ** * ** **** * * ** * ** *** *** consensus_5613#0 CGGCGATGGCACACTGCACTTCCTCCAAACACAGGCGACACTTTTCATTCATTTTATTCG 1193 consensus_5613#1 TG-CATCTGCGTGAGGGGCACCTTGAGGGCGTAATTG-CTCCTTTCGCTCCTTTCGTTCG 812 * * ** * * * * * * * * * **** ** *** **** consensus_5613#0 CAATGCTGCGCTATCGCTCCGG 1215 consensus_5613#1 CG-CGCTTTACGA--------- 824 * *** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||