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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1649 fasta sequence
[ATAAGTGTGCAGGGGCAAGGCTAAACTCTAATTCGTACACATAGCGCATAGCGGCTGTCGCGGCAACGAAGCTTTAGAGCCAATGTGACCAGAAACGATGTAGNAGAATACACAAATCCACTTTGTAAAAATGGGAAGAAATACTCTCCCTTCCGTAAACCCCCCCTTTCAACTGGATCAATTTAGTTGGGATGGGATGAAGAAGCTTNAGGAGATTAGTGTGTGTTTGTGCTACTATCTCGCAGCTTCTCCTACTACCTACTACTACTACTACCACTATTATACTAGGAAGCGGAACCTAACAACTATCGCTCTTACTGCAGCAACCACAACTACTTCGGTTGCTACGATCACTGTGTGTTGTGTTAGAATAGTTCACGTGTTTCGATGTGCATGGATGTGTCTTTTACTGTGTGAGCGTGTGTGTGTGTGAGTGTCTCCTTTTGTGTCCTTTCGTGTGGTCGCGTATGTGTGTGTATGTTCACAGCAGAAGTAGTAGAACACGCCACAACACGGAGGCAAAAGGAATACCCACAGTACCAATTAATGTCAACCACAAAGTAATGTAGCAGAAGCGTTTGTGTTTAATATAGTGCAATANAAGGGAGGGTTTCGTTGCGGGAAAGAATCAAGGGCCGAGTGGTAGAAAGAACCCAAAACTGGCATTCAACCATGGGAAACAATTTTACACGAGCGTATAGTCACGAGTAGTCAGCAATAGTCAGCAAAAAAAAGGCAAATTACACTTCACAGGAGCTTAGAGGATAGAAAAAAAAGCAAAAGGGAACAGTTCCATGCTGTTAAAGGGGGGGCACTTGCATTCGGTGCAAACATGAAACAGACAGAGTAAAGGGCACACAAACAAAAACAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAGTAAAAAATGCAGAGAATAAGAGGAAAAAAAAACACACACACATACACACATACAAACAAACGAAACAGGATAGTTTATGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCC-CGGATAGAGGGTTTACAGGAGCGGAGCGAAGCTGAAGAAAGAAGCTG-AAAGG-AAACTGGAAAACGAAGCTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATGCACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCAAACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGGAGATGTAAGGTGTGTAAGGTGGGGACAGTGTTGCAAACAGGAGGGAGAGTGGAAATGGAACAGCGCAATCAGTCAGAGAAGGGAGCAATGGAATGGAATGTGTGCGTGTGCGTATGTCTGTGTGTGTATTTATCATTTTTAATAGATTAGGAAGAGGTAGGTAATTTTTACTATCTGTCCTCTTCCCACAGACAGAAGACGCAAAGTGAAGGCCAGAGACATGAAACGAAACAGTTACAAAGAAAACTAGAAACGTTTACACAACGAATGTGTCTTGCGTGCGTGCGTGTGTGTGTTGGACAGAACTTCACACTACCATCCCTACCCTATTTGT]
[+] EMBL BX620565 [ATAAGTGTGCAGGGGCAAGGCTAAACTCTAATTCGTACACATAGCGCATAGCGGCTGTCGCGGCAACGAAGCTTTAGAGCCAATGTGACCAGAAACGATGTAGNAGAATACACAAATCCACTTTGTAAAAATGGGAAGAAATACTCTCCCTTCCGTAAACCCCCCCTTTCAACTGGATCAATTTAGTTGGGATGGGATGAAGAAGCTTNAGGAGATTAGTGTGTGTTTGTGCTACTATCTCGCAGCTTCTCCTACTACCTACTACTACTACTACCACTATTATACTAGGAAGCGGAACCTAACAACTATCGCTCTTACTGCAGCAACCACAACTACTTCGGTTGCTACGATCACTGTGTGTTGTGTTAGAATAGTTCACGTGTTTCGATGTGCATGGATGTGTCTTTTACTGTGTGAGCGTGTGTGTGTGTGAGTGTCTCCTTTTGTGTCCTTTCGTGTGGTCGCGTATGTGTGTGTATGTTCACAGCAGAAGTAGTAGAACACGCCACAACACGGAGGCAAAAGGAATACCCACAGTACCAATTAATGTCAACCACAAAGTAATGTAGCAGAAGCGTTTGTGTTTAATATAGTGCAATANAAGGGAG ]
[+] EMBL BM647377 [ ccGAGCGTGTGTGTGTGTGAGTGTCTCCTTTTGTGTCCTTTTGTGTGTTCGCGTGTGTGTGTGTATGTTCACAGCAGAAGTAGTAGAACACGCCACAACACGGAGGCAAAAGGAATACCCACAGTACCAATTAATGTCAACCACAAAGTAATGTAGCAGAAGCGTTTGTGTTTAATATAGTGCAATAGAAGGGAGGGTTTCGTTGCGGGAAAGAATCAAGGGCCGAGTGGTAGAAAGAACCCAAAACTGGCATTCAACCATGGGAAACAATTTTACACGAGCGTATAGTCACGAGTAGTCAGCAATAGTCAGCAAAAAAAAGGCAAATTACACTTCACAGGAGCTTAGAGGATAGAAAAAAAAGCAAAAGGGAACAGTTCCATGCTGTTAAAGGGGGGGCACTTGCATTCGGTGCAAACATGAAACAGACAGAGTAAAGGGCACACAAACAAAAACAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAGTAAAAAATGCAGAGAATAAGAGGAAAAAAAAACACACACACATACACACATACAAACAAACGAAACAGGATAGTTTATGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCC CGGATAGAGGGTTTACAGGAGCGGAGCGAAGCTGAAGAAAGAAGCTG AAAGG AAACTG ]
[+] EMBL BM606284 [ ccgATACAAACAAACGAAACAGGATAGTTTATGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCCACGGATAGAGGGTTTACAGCA AGGAGCGAAGCTGAAGAAAGAAGCTGAAAAGGAAAACTGGAAAACGAAGCTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATGCACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCAAACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGGAGATGTAAGGTGTGTAAGGTGGGGACAGTGTTGCAAACAGGAGGGAGAGTGGAAATGGAACAGCGCAATCAGTCAGAGAAGGGAGCAATGGAATGGAATGTGTGCGTGTGCGTATGTCTGTGTGTGTATTTATCATTTTTAATAGATTAGGAAGAGGTAGGTAATTTTTACTATCTGTCCTCTTCCCACAGACAGAAGACGCAAAGTGAAGGCCAGAGACATGAAACGAAACAGTTACAAAGAAAACTAGAAACGTTTACACAACGAATGTGTCTTGCGTGCGTGCGTGTGTGTGTTGGACAGAACTTCACACTACCATCCCTACCCTATTTGT]
consensusID : consensus_5616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CCGGGAACAGTTCCATGCTGTTAAAGGGGGGGCACTTGCATTCGGTGCAAACATGAAACAGACAGAGCAAAGGGCAGACAAACAAAAAAAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAATAAAAAAAAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAATAAAAAAATGCAGAAAATAAGAGGAAAAAAAACACACATACACATACACACATACAAACAAACGAAACAGGATAGTTTATGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCCACGGATAGAGGGTTTACAGCAAGGAGCGAAGCTGAAGAAAGAAGCTGAAAAGGAAAACTGGAAAACGAAGCTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATGCACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCAAACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGGAGATGTAAGGTGGTGTAAGGGTGGGGACAGTGTTGCAAACAGGGAGGGC]
[+] EMBL BM586905 [CCGGGAACAGTTCCATGCTGTTAAAGGGGGGGCACTTGCATTCGGTGCAAACATGAAACAGACAGAGCAAAGGGCAGACAAACAAAAAAAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAATAAAAAAAAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAATAAAAAAATGCAGAAAATAAGAGGAAAAAAAACACACATACACATACACACATACAAACAAACGAAACAGGATAGTTTATGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCCACGGATAGAGGGTTTACAGCAAGGAGCGAAGCTGAAGAAAGAAGCTGAAAAGGAAAACTGGAAAACGAAGCTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATGCACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCAAACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGGAGATGTAAGGTGGTGTAAGGGTGGGGACAGTGTTGCAAACAGGGAGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5616#0 ATAAGTGTGCAGGGGCAAGGCTAAACTCTAATTCGTACACATAGCGCATAGCGGCTGTCG 60
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 CGGCAACGAAGCTTTAGAGCCAATGTGACCAGAAACGATGTAGNAGAATACACAAATCCA 120
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 CTTTGTAAAAATGGGAAGAAATACTCTCCCTTCCGTAAACCCCCCCTTTCAACTGGATCA 180
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 ATTTAGTTGGGATGGGATGAAGAAGCTTNAGGAGATTAGTGTGTGTTTGTGCTACTATCT 240
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 CGCAGCTTCTCCTACTACCTACTACTACTACTACCACTATTATACTAGGAAGCGGAACCT 300
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 AACAACTATCGCTCTTACTGCAGCAACCACAACTACTTCGGTTGCTACGATCACTGTGTG 360
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 TTGTGTTAGAATAGTTCACGTGTTTCGATGTGCATGGATGTGTCTTTTACTGTGTGAGCG 420
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 TGTGTGTGTGTGAGTGTCTCCTTTTGTGTCCTTTCGTGTGGTCGCGTATGTGTGTGTATG 480
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 TTCACAGCAGAAGTAGTAGAACACGCCACAACACGGAGGCAAAAGGAATACCCACAGTAC 540
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 CAATTAATGTCAACCACAAAGTAATGTAGCAGAAGCGTTTGTGTTTAATATAGTGCAATA 600
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 NAAGGGAGGGTTTCGTTGCGGGAAAGAATCAAGGGCCGAGTGGTAGAAAGAACCCAAAAC 660
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 TGGCATTCAACCATGGGAAACAATTTTACACGAGCGTATAGTCACGAGTAGTCAGCAATA 720
consensus_5616#1 -------------CCGGGAACAGTTCCATGC-------TGTTAAAGGGGGGGCACTTGCA 40
** **** ** * * * * * * * * ** *
consensus_5616#0 GTCAGCAAAAAAAAGGCAAATTACACTTCACAGGAGCTTAGAGGATAGAAAAAAAAGCAA 780
consensus_5616#1 TTCGGTGCAAACA---TGAAACAGAC------AGAGC--AAAGGGCAGACAAA----CAA 85
** * *** * ** * ** **** * *** *** *** ***
consensus_5616#0 AAGGGAACAGTTCCATGCTGTTAAAGGGGGGGCACTTGCATTCGGTGCAAACATGAAACA 840
consensus_5616#1 AAAAAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTC-TTCAGTCAC-AAACA 143
** * ** ** *** * ** * ** * ** * * ** ** *****
consensus_5616#0 GACAGAGTAAAGGGCACACAAACAAAAACAATCATTTGAATGTACTACAAAGAGGATTAT 900
consensus_5616#1 GACT---TCGGTAGTGCATAATAAAAAAAAATCATTTGAATGTACTACAAAGAGGATTAT 200
*** * * ** ** ***** *******************************
consensus_5616#0 TTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAGTAAAAAA-TGCAGAGAATA 959
consensus_5616#1 TTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAATAAAAAAATGCAGAAAATA 260
**************************************** ******* ****** ****
consensus_5616#0 AGAGGAAAAAAAA-ACACACACACATACACACATACAAACAAACGAAACAGGATAGTTTA 1018
consensus_5616#1 AGAGGAAAAAAAACACACATACACATACACACATACAAACAAACGAAACAGGATAGTTTA 320
************* ***** ****************************************
consensus_5616#0 TGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCC-CGGATAGAGG 1077
consensus_5616#1 TGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCCACGGATAGAGG 380
************************************************* **********
consensus_5616#0 GTTTACAGGAGCGGAGCGAAGCTGAAGAAAGAAGCTGAAAGG--AAACTGGAAAACGAAG 1135
consensus_5616#1 GTTTACAGCAA-GGAGCGAAGCTGAAGAAAGAAGCTGAAAAGGAAAACTGGAAAACGAAG 439
******** * **************************** * ****************
consensus_5616#0 CTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATG 1195
consensus_5616#1 CTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATG 499
************************************************************
consensus_5616#0 CACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCA 1255
consensus_5616#1 CACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCA 559
************************************************************
consensus_5616#0 AACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGG 1315
consensus_5616#1 AACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGG 619
************************************************************
consensus_5616#0 AGATGTAAGGTG-TGTAAGG-TGGGGACAGTGTTGCAAACAGGAGGGAGAGTGGAAATGG 1373
consensus_5616#1 AGATGTAAGGTGGTGTAAGGGTGGGGACAGTGTTGCAAACAGGGAGGGC----------- 668
************ ******* ********************** **
consensus_5616#0 AACAGCGCAATCAGTCAGAGAAGGGAGCAATGGAATGGAATGTGTGCGTGTGCGTATGTC 1433
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 TGTGTGTGTATTTATCATTTTTAATAGATTAGGAAGAGGTAGGTAATTTTTACTATCTGT 1493
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 CCTCTTCCCACAGACAGAAGACGCAAAGTGAAGGCCAGAGACATGAAACGAAACAGTTAC 1553
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 AAAGAAAACTAGAAACGTTTACACAACGAATGTGTCTTGCGTGCGTGCGTGTGTGTGTTG 1613
consensus_5616#1 ------------------------------------------------------------
consensus_5616#0 GACAGAACTTCACACTACCATCCCTACCCTATTTGT 1649
consensus_5616#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||