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Anopheles gambiae
cluster # 5617 cluster # 5617       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5617#0 length = 1313 sequences # 3  
consensus_5617#1 length = 102 sequences # 1  

consensusID : consensus_5617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1313
fasta sequence
                              [CCGCCCACGCGTCCGAAAATG-G-CGAAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAATAATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAACATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCATTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGAACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTCTGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAACGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGATTTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTTCTGGCGGTGATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCACGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATA-T-CAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAGCTATTCCATTACAGATGGTAGCGAAAAGCTAGCCGATCTTAAGATGGGTGCCTCTAAATCTCCCGCGGTTGCTGTGTTAGCGGCACTCAAGGGCACCTTTTTAAATATCGTCAGCTGGTCAGCTGGTCAACTGTCTGTTCTTAACGGAACGAAACCAGAGGCACACGTATCGCAAACCATGGTGGAGAAAGAGGAGCAGGCGAAGAAAGTGACGAACGCCTCATCGTCGTGCATTCCTATATTCGAAACGACCAGTAATGGAAAGGGTCAACTTACGGTGCCATTGGACTACAGTAGCACGGTCGACGATATTTCCATGACCCCAGCTGGTGTGTATTTCGAGGAAACAGCGCGTAGCGATCGAAACGCGTCACGGCCTGGGCGGCGAAAGCGAAGGAAAGACACATCCAAAAGCAACCAGAACGTACATGCAGGTAGCGAGGGCGGCAGTAGCAAAGGCTGTGGTAAAAATCGAAAAGATAAGAAACGACACGCGCTGCGTAGAGACATTCTGAGCGATAATCTAGCCTTATCTATGGACGATAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATAGCAATCCTGTGATGGAAACACACTCGCTGCCCCAACGATGNTTGTCGTCGAGCTTCAGCCCCGTCATCGACT]

[+] EMBL BM586918             [CCGCCCACGCGTCCGAAAATG G CGAAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAATAATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAACATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCATTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGAACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTCTGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAACGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGATTTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTTCTGGCGGTGATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCACGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATA TCCAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAGCTATTCCATTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM596241             [CCGCCCACGCGTCCGCCCACGCGTCCGAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAATAATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAACATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCATTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGAACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTCTGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAACGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGATTTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTTCTGGCGGTGATTCTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCCCGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATATT CAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAACTATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX621654             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCTCGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATA T CAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAGCTATTCCATTACAGATGGTAGCGAAAAGCTAGCCGATCTTAAGATGGGTGCCTCTAAATCTCCCGCGGTTGCTGTGTTAGCGGCACTCAAGGGCACCTTTTTAAATATCGTCAGCTGGTCAGCTGGTCAACTGTCTGTTCTTAACGGAACGAAACCAGAGGCACACGTATCGCAAACCATGGTGGAGAAAGAGGAGCAGGCGAAGAAAGTGACGAACGCCTCATCGTCGTGCATTCCTATATTCGAAACGACCAGTAATGGAAAGGGTCAACTTACGGTGCCATTGGACTACAGTAGCACGGTCGACGATATTTCCATGACCCCAGCTGGTGTGTATTTCGAGGAAACAGCGCGTAGCGATCGAAACGCGTCACGGCCTGGGCGGCGAAAGCGAAGGAAAGACACATCCAAAAGCAACCAGAACGTACATGCAGGTAGCGAGGGCGGCAGTAGCAAAGGCTGTGGTAAAAATCGAAAAGATAAGAAACGACACGCGCTGCGTAGAGACATTCTGAGCGATAATCTAGCCTTATCTATGGACGATAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATAGCAATCCTGTGATGGAAACACACTCGCTGCCCCAACGATGNTTGTCGTCGAGCTTCAGCCCCGTCATCGACT]


>consensus_5617#0 CCGCCCACGCGTCCGAAAATGGCGAAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAAT AATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAAC ATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCA TTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGA ACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTC TGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAA CGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGAT TTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTT CTGGCGGTGATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCACGTACGCAAT GCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATATCAACGGTTCAGT TCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAG CTATTCCATTACAGATGGTAGCGAAAAGCTAGCCGATCTTAAGATGGGTGCCTCTAAATC TCCCGCGGTTGCTGTGTTAGCGGCACTCAAGGGCACCTTTTTAAATATCGTCAGCTGGTC AGCTGGTCAACTGTCTGTTCTTAACGGAACGAAACCAGAGGCACACGTATCGCAAACCAT GGTGGAGAAAGAGGAGCAGGCGAAGAAAGTGACGAACGCCTCATCGTCGTGCATTCCTAT ATTCGAAACGACCAGTAATGGAAAGGGTCAACTTACGGTGCCATTGGACTACAGTAGCAC GGTCGACGATATTTCCATGACCCCAGCTGGTGTGTATTTCGAGGAAACAGCGCGTAGCGA TCGAAACGCGTCACGGCCTGGGCGGCGAAAGCGAAGGAAAGACACATCCAAAAGCAACCA GAACGTACATGCAGGTAGCGAGGGCGGCAGTAGCAAAGGCTGTGGTAAAAATCGAAAAGA TAAGAAACGACACGCGCTGCGTAGAGACATTCTGAGCGATAATCTAGCCTTATCTATGGA CGATAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATAGCAATCCTGTGATGGAAAC ACACTCGCTGCCCCAACGATGNTTGTCGTCGAGCTTCAGCCCCGTCATCGACT



consensusID : consensus_5617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 102
fasta sequence
                              [ATANTCTAACCNTATCTATGGACGANAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATATGCACTCCTATGATGGAAACACCCTCGGCTGCCCCAACG]

[+] EMBL BX628412             [ATANTCTAACCNTATCTATGGACGANAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATATGCACTCCTATGATGGAAACACCCTCGGCTGCCCCAACG]


>consensus_5617#1 ATANTCTAACCNTATCTATGGACGANAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGT ATATGCACTCCTATGATGGAAACACCCTCGGCTGCCCCAACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5617#0      CCGCCCACGCGTCCGAAAATGGCGAAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAAT 60
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      AATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAAC 120
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      ATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCA 180
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      TTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGA 240
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      ACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTC 300
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      TGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAA 360
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      CGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGAT 420
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      TTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTT 480
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      CTGGCGGTGATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCACGTACGCAAT 540
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      GCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATATCAACGGTTCAGT 600
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      TCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAG 660
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      CTATTCCATTACAGATGGTAGCGAAAAGCTAGCCGATCTTAAGATGGGTGCCTCTAAATC 720
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      TCCCGCGGTTGCTGTGTTAGCGGCACTCAAGGGCACCTTTTTAAATATCGTCAGCTGGTC 780
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      AGCTGGTCAACTGTCTGTTCTTAACGGAACGAAACCAGAGGCACACGTATCGCAAACCAT 840
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      GGTGGAGAAAGAGGAGCAGGCGAAGAAAGTGACGAACGCCTCATCGTCGTGCATTCCTAT 900
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      ATTCGAAACGACCAGTAATGGAAAGGGTCAACTTACGGTGCCATTGGACTACAGTAGCAC 960
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      GGTCGACGATATTTCCATGACCCCAGCTGGTGTGTATTTCGAGGAAACAGCGCGTAGCGA 1020
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      TCGAAACGCGTCACGGCCTGGGCGGCGAAAGCGAAGGAAAGACACATCCAAAAGCAACCA 1080
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      GAACGTACATGCAGGTAGCGAGGGCGGCAGTAGCAAAGGCTGTGGTAAAAATCGAAAAGA 1140
consensus_5617#1      ------------------------------------------------------------
                                                                                  

consensus_5617#0      TAAGAAACGACACGCGCTGCGTAGAGACATTCTGAGCGATAATCTAGCCTTATCTATGGA 1200
consensus_5617#1      --------------------------------------ATANTCTAACCNTATCTATGGA 22
                                                            *** **** ** **********

consensus_5617#0      CGATAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATA-GCAATCCTGTGATGGAAA 1259
consensus_5617#1      CGANAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATATGCACTCCTATGATGGAAA 82
                      *** ************************************* *** **** *********

consensus_5617#0      CACACTCG-CTGCCCCAACGATGNTTGTCGTCGAGCTTCAGCCCCGTCATCGACT 1313
consensus_5617#1      CACCCTCGGCTGCCCCAACG----------------------------------- 102
                      *** **** ***********                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)