|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 814 fasta sequence
[CAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAAGATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCTGTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTGCATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCAAGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGCAAACCACGAATCCAGGAGGCGTATTCCAGTAGAGGCGAAACTTGTTGACTTCCAGTTGGCCCGATTTGCTCCTCCTGTCTTGGATGTTTGGACACTGATTATGCTTTGCAGTACGCGCGCGTTTCGACAGACTACATTTAACAGCTTTGTTGGATTCTTATTATCAAACTTTAGGTAATCTTTTACTATCGAATAGCAATATGAATATTGAACCGATAATATCACGCAACGAATATAGTGCCTCGTGTGACTGTTTTGCATTGGCTGGACTTATCGAGTCTTTGCTCTTCAGCCATCTTACACTGCTACCGAAACAAGCTGCCAAAGATATGTTAAATTGTTCGGAAAATTTTGATAATTTCTTACGTGGCAATGGAAAACTNCCACATCTGCTTACGATACTTCGAGCAAGACCCCAACTATCGGAATTATAATTGACCGAAATTCTGGAAGAATTGGTTGAATCTTTGAAGTAGTGTTTAAAATAACCAAGTGAACCAATCGATACAATCGTGATGCTATCGCTAC]
[+] EMBL BX624405 [CAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAAGATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCTGTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTGCATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCAAGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGCAAACCACGAATCCAGGAGGCGTATTCCAGTAGAGGCGAAACTTGTTGACTTCCAGTTGGCCCGATTTGCTCCTCCTGTCTTGGATGTTTGGACACTGATTATGCTTTGCAGTACGCGCGCGTTTCGACAG CTACATTTAACAGCTTTGTTGGATTCTTATTATCAAACTTTAGGTAATCTTTTACTATCGAATAGCAATATGAATATTGAACCGATAATATCACGCAACGAATATAGTGCCTCGTGTGACTGTTTTGCATTGGCTGGACTTATCGAGTCTTTGCTCTTCAGCCATCTTACACTGCTACCGAAACAAGCTGCCAAAGATATGTTAAATT ]
[+] EMBL BX619912 [ TTTCGACAGACTACATTTAACAGC TTGTTGGATTCTTATTATCAAACTTTAGGTAATCTTTTACTATCGAATAGCAATATGAATATTGAACCGATAATATCACGCAACGAATATAGTGCCTCGTGTGACTGTTTTGCTTTGGCTGGACTTATCGAGTCTTTGCTCTTCAGCCATCTTACACTGCTACCGAAACAAGCTGCCAAAGATATGTTAAATTGTTCGGAAAATTTTGATAATTTCTTACGTGGCAATGGAAAACTNCCACATCTGCTTACGATACTTCGAGCAAGACCCCAACTATCGGAATTATAATTGACCGAAATT ]
[+] EMBL BX619042 [ gCTACATTTAACAGCTTTGTTGGATTCTTATTATCAAACTTTAGGTAATCTTTTACTATCGAATAGCAATATGAATATTGAACCGATAATATCACGCAACGAATATAGTGCCTCGTGTGACTGTTTTGCATTGGCTGGACTTATCGAGTCTTTGCTCTTCAGCCATCTTACACTGCTACCGAAACAAGCTGCCAAAGATATGTTAAATTGTTCGGAAAATTTTGATAATTTCTTACGTGGCAATGGAAAACT CCACATCTGCTTACGATACTTCGAGCAAGACACCAACTATCGGAA TAGAA TGACCGAAATGCTGGAAGAATTGGTTGAATCTTTGAAGTAGTGTTTAAAATAACCAAGTGAACCAATCGATACAATCGTGATGCTATCGCTAC]
consensusID : consensus_5618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[CAAGATAAACCTGGAGAACGCGATACAAGTGCTGTGTGAGATGATCAAGCGAATTGAGAAATACGCCAGCTCAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAAGATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCTGTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTGCATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCAAGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGGTGAGCGCCGTGGCCGGAAGCGTTCGTCTATTAAAAAACCAAATCCTTGCGAAGTGCTAAATTTAGGCAACTGGTCCGCACCGGGAGCTTCTCGTCCTTCGAGTTGCATACTGATCGACTTCCAAATTGCGCGCTACGCACCGCCAGCGTACGATATTTTCTCGTTTCTCACATCGACGACGACGCGGGAATTTCGGAAACAGTACCTTGAAGAGCTGCTAGATATCTACTATGAAGCATTGCAATGTGAACTAGATTGGTTTCATCGGGATGTGCGGGAAGTGTTTTTTGGACGGCTTTCAATCATATCGGCACTCCTGCGATCAGTATCAACTCGCTGGACT]
[+] EMBL BX626169 [CAAGATAAACCTGGAGAACGCGATACAAGTGCTGTGTGAGATGATCAAGCGAATTGAGAAATACGCCAGCTCAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAAGATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCTGTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTGCATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCAAGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGGTGAGCGCCGTGGCCGGAAGCGTTCGTCTATTAAAAAACCAAATCCTTGCGAAGTGCTAAATTTAGGCAACTGGTCCGCACCGGGAGCTTCTCGTCCTTCGAGTTGCATACTGATCGACTTCCAAATTGCGCGCTACGCACCGCCAGCGTACGATATTTTCTCGTTTCTCACATCGACGACGACGCGGGAATTTCGGAAACAGTACCTTGAAGAGCTGCTAGATATCTACTATGAAGCATTGCAATGTGAACTAGATTGGTTTCATCGGGATGTGCGGGAAGTGTTTTTTGGACGGCTTTCAATCATATCGGCACTCCTGCGATCAGTATCAACTCGCTGGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5618#0 ------------------------------------------------------------
consensus_5618#1 CAAGATAAACCTGGAGAACGCGATACAAGTGCTGTGTGAGATGATCAAGCGAATTGAGAA 60
consensus_5618#0 -----------CAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAA 49
consensus_5618#1 ATACGCCAGCTCAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAA 120
*************************************************
consensus_5618#0 GATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCT 109
consensus_5618#1 GATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCT 180
************************************************************
consensus_5618#0 GTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTG 169
consensus_5618#1 GTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTG 240
************************************************************
consensus_5618#0 CATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCA 229
consensus_5618#1 CATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCA 300
************************************************************
consensus_5618#0 AGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGCAAA 289
consensus_5618#1 AGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGGTGA 360
******************************************************** *
consensus_5618#0 CCACGAATCCAGGAGGCGTATTCCAGT--AGAGGCGAAACT---------TGTTGACTTC 338
consensus_5618#1 GCGCCGTGGCCGGAAGCGTTCGTCTATTAAAAAACCAAATCCTTGCGAAGTGCTAAATTT 420
* * * *** **** * * * * * *** ** * * **
consensus_5618#0 ---CAGTTGGCCCGATTTGCT--CCTCCTGTCTTGGATGTTTGGACACTGATTATGCTTT 393
consensus_5618#1 AGGCAACTGGTCCGCACCGGGAGCTTCTCGTCCTTCGAGTT-GCATACTGATCGACTTCC 479
** *** *** * * ** *** * *** * * ****** *
consensus_5618#0 GCAGTACGCGC-GCGTTTCGACAGACTACATTTAACAGCTTTGTTGGATTCTTATTATCA 452
consensus_5618#1 AAATTGCGCGCTACGCACCGCCAGCGTACGATA------TTTTCTCGTTTCTCAC-ATCG 532
* * ***** ** ** *** *** * *** * * **** * ***
consensus_5618#0 AACTTTAGGTAATCTTTTACTATCGAATAGCAATATGAATATTGAACCGATA-ATATCAC 511
consensus_5618#1 ACGACGACGCGGGAATTTCGGA---AACAGTACCTTGAA----GAGCTGCTAGATATC-T 584
* * * *** * ** ** * **** ** * * ** *****
consensus_5618#0 GCAACGAATATAGTGCCTCGTGTGACTGTTTTGCATTGGCTGGACTTATCGAGTCTTTGC 571
consensus_5618#1 ACTATGAA-GCATTGCAATGTGAACTAGATTGGTTTCATCGGGATGTGCGGGAAG--TGT 641
* * *** * *** *** * ** * * * *** * * **
consensus_5618#0 TCTTCAGCCATCTTACACTGCTACCGAAACAAGCTGCCAAAGATATGTTAAATTGTTCGG 631
consensus_5618#1 TTTTTGGACGGCTTTCAATCATATCGGCACTC-CTGCGATCAGTAT--CAACTCGCTGGA 698
* ** * * *** ** * ** ** ** **** * *** ** * * * *
consensus_5618#0 AAAATTTTGATAATTTCTTACGTGGCAATGGAAAACTNCCACATCTGCTTACGATACTTC 691
consensus_5618#1 CT---------------------------------------------------------- 700
consensus_5618#0 GAGCAAGACCCCAACTATCGGAATTATAATTGACCGAAATTCTGGAAGAATTGGTTGAAT 751
consensus_5618#1 ------------------------------------------------------------
consensus_5618#0 CTTTGAAGTAGTGTTTAAAATAACCAAGTGAACCAATCGATACAATCGTGATGCTATCGC 811
consensus_5618#1 ------------------------------------------------------------
consensus_5618#0 TAC 814
consensus_5618#1 ---
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||