These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 814 fasta sequence [CAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAAGATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCTGTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTGCATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCAAGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGCAAACCACGAATCCAGGAGGCGTATTCCAGTAGAGGCGAAACTTGTTGACTTCCAGTTGGCCCGATTTGCTCCTCCTGTCTTGGATGTTTGGACACTGATTATGCTTTGCAGTACGCGCGCGTTTCGACAGACTACATTTAACAGCTTTGTTGGATTCTTATTATCAAACTTTAGGTAATCTTTTACTATCGAATAGCAATATGAATATTGAACCGATAATATCACGCAACGAATATAGTGCCTCGTGTGACTGTTTTGCATTGGCTGGACTTATCGAGTCTTTGCTCTTCAGCCATCTTACACTGCTACCGAAACAAGCTGCCAAAGATATGTTAAATTGTTCGGAAAATTTTGATAATTTCTTACGTGGCAATGGAAAACTNCCACATCTGCTTACGATACTTCGAGCAAGACCCCAACTATCGGAATTATAATTGACCGAAATTCTGGAAGAATTGGTTGAATCTTTGAAGTAGTGTTTAAAATAACCAAGTGAACCAATCGATACAATCGTGATGCTATCGCTAC] [+] EMBL BX624405 [CAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAAGATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCTGTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTGCATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCAAGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGCAAACCACGAATCCAGGAGGCGTATTCCAGTAGAGGCGAAACTTGTTGACTTCCAGTTGGCCCGATTTGCTCCTCCTGTCTTGGATGTTTGGACACTGATTATGCTTTGCAGTACGCGCGCGTTTCGACAG CTACATTTAACAGCTTTGTTGGATTCTTATTATCAAACTTTAGGTAATCTTTTACTATCGAATAGCAATATGAATATTGAACCGATAATATCACGCAACGAATATAGTGCCTCGTGTGACTGTTTTGCATTGGCTGGACTTATCGAGTCTTTGCTCTTCAGCCATCTTACACTGCTACCGAAACAAGCTGCCAAAGATATGTTAAATT ] [+] EMBL BX619912 [ TTTCGACAGACTACATTTAACAGC TTGTTGGATTCTTATTATCAAACTTTAGGTAATCTTTTACTATCGAATAGCAATATGAATATTGAACCGATAATATCACGCAACGAATATAGTGCCTCGTGTGACTGTTTTGCTTTGGCTGGACTTATCGAGTCTTTGCTCTTCAGCCATCTTACACTGCTACCGAAACAAGCTGCCAAAGATATGTTAAATTGTTCGGAAAATTTTGATAATTTCTTACGTGGCAATGGAAAACTNCCACATCTGCTTACGATACTTCGAGCAAGACCCCAACTATCGGAATTATAATTGACCGAAATT ] [+] EMBL BX619042 [ gCTACATTTAACAGCTTTGTTGGATTCTTATTATCAAACTTTAGGTAATCTTTTACTATCGAATAGCAATATGAATATTGAACCGATAATATCACGCAACGAATATAGTGCCTCGTGTGACTGTTTTGCATTGGCTGGACTTATCGAGTCTTTGCTCTTCAGCCATCTTACACTGCTACCGAAACAAGCTGCCAAAGATATGTTAAATTGTTCGGAAAATTTTGATAATTTCTTACGTGGCAATGGAAAACT CCACATCTGCTTACGATACTTCGAGCAAGACACCAACTATCGGAA TAGAA TGACCGAAATGCTGGAAGAATTGGTTGAATCTTTGAAGTAGTGTTTAAAATAACCAAGTGAACCAATCGATACAATCGTGATGCTATCGCTAC] consensusID : consensus_5618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [CAAGATAAACCTGGAGAACGCGATACAAGTGCTGTGTGAGATGATCAAGCGAATTGAGAAATACGCCAGCTCAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAAGATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCTGTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTGCATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCAAGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGGTGAGCGCCGTGGCCGGAAGCGTTCGTCTATTAAAAAACCAAATCCTTGCGAAGTGCTAAATTTAGGCAACTGGTCCGCACCGGGAGCTTCTCGTCCTTCGAGTTGCATACTGATCGACTTCCAAATTGCGCGCTACGCACCGCCAGCGTACGATATTTTCTCGTTTCTCACATCGACGACGACGCGGGAATTTCGGAAACAGTACCTTGAAGAGCTGCTAGATATCTACTATGAAGCATTGCAATGTGAACTAGATTGGTTTCATCGGGATGTGCGGGAAGTGTTTTTTGGACGGCTTTCAATCATATCGGCACTCCTGCGATCAGTATCAACTCGCTGGACT] [+] EMBL BX626169 [CAAGATAAACCTGGAGAACGCGATACAAGTGCTGTGTGAGATGATCAAGCGAATTGAGAAATACGCCAGCTCAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAAGATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCTGTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTGCATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCAAGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGGTGAGCGCCGTGGCCGGAAGCGTTCGTCTATTAAAAAACCAAATCCTTGCGAAGTGCTAAATTTAGGCAACTGGTCCGCACCGGGAGCTTCTCGTCCTTCGAGTTGCATACTGATCGACTTCCAAATTGCGCGCTACGCACCGCCAGCGTACGATATTTTCTCGTTTCTCACATCGACGACGACGCGGGAATTTCGGAAACAGTACCTTGAAGAGCTGCTAGATATCTACTATGAAGCATTGCAATGTGAACTAGATTGGTTTCATCGGGATGTGCGGGAAGTGTTTTTTGGACGGCTTTCAATCATATCGGCACTCCTGCGATCAGTATCAACTCGCTGGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5618#0 ------------------------------------------------------------ consensus_5618#1 CAAGATAAACCTGGAGAACGCGATACAAGTGCTGTGTGAGATGATCAAGCGAATTGAGAA 60 consensus_5618#0 -----------CAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAA 49 consensus_5618#1 ATACGCCAGCTCAGAGAAATTAGATGAAATATTGCTTAAAGTGCCCGATGTAATACGCAA 120 ************************************************* consensus_5618#0 GATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCT 109 consensus_5618#1 GATATATGACTTTTCCAAGCCGTCGACAGTCTTCCGCAACGTGTTAAATCATGGTGATCT 180 ************************************************************ consensus_5618#0 GTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTG 169 consensus_5618#1 GTGGTGTAACAACGTAATGTTTCGATACGAAATGATACCAACGAGCGTGGACAGTAGTTG 240 ************************************************************ consensus_5618#0 CATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCA 229 consensus_5618#1 CATCAATACTGAAGGGCACCTACCTGAAGGACGCAAAGTGACATCGGACCGTGAGGATCA 300 ************************************************************ consensus_5618#0 AGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGCAAA 289 consensus_5618#1 AGCCGAAACCGGAAAAGACGCAGATGTTTCAAACAGCGCTCTGTTCGTCAGCAACGGTGA 360 ******************************************************** * consensus_5618#0 CCACGAATCCAGGAGGCGTATTCCAGT--AGAGGCGAAACT---------TGTTGACTTC 338 consensus_5618#1 GCGCCGTGGCCGGAAGCGTTCGTCTATTAAAAAACCAAATCCTTGCGAAGTGCTAAATTT 420 * * * *** **** * * * * * *** ** * * ** consensus_5618#0 ---CAGTTGGCCCGATTTGCT--CCTCCTGTCTTGGATGTTTGGACACTGATTATGCTTT 393 consensus_5618#1 AGGCAACTGGTCCGCACCGGGAGCTTCTCGTCCTTCGAGTT-GCATACTGATCGACTTCC 479 ** *** *** * * ** *** * *** * * ****** * consensus_5618#0 GCAGTACGCGC-GCGTTTCGACAGACTACATTTAACAGCTTTGTTGGATTCTTATTATCA 452 consensus_5618#1 AAATTGCGCGCTACGCACCGCCAGCGTACGATA------TTTTCTCGTTTCTCAC-ATCG 532 * * ***** ** ** *** *** * *** * * **** * *** consensus_5618#0 AACTTTAGGTAATCTTTTACTATCGAATAGCAATATGAATATTGAACCGATA-ATATCAC 511 consensus_5618#1 ACGACGACGCGGGAATTTCGGA---AACAGTACCTTGAA----GAGCTGCTAGATATC-T 584 * * * *** * ** ** * **** ** * * ** ***** consensus_5618#0 GCAACGAATATAGTGCCTCGTGTGACTGTTTTGCATTGGCTGGACTTATCGAGTCTTTGC 571 consensus_5618#1 ACTATGAA-GCATTGCAATGTGAACTAGATTGGTTTCATCGGGATGTGCGGGAAG--TGT 641 * * *** * *** *** * ** * * * *** * * ** consensus_5618#0 TCTTCAGCCATCTTACACTGCTACCGAAACAAGCTGCCAAAGATATGTTAAATTGTTCGG 631 consensus_5618#1 TTTTTGGACGGCTTTCAATCATATCGGCACTC-CTGCGATCAGTAT--CAACTCGCTGGA 698 * ** * * *** ** * ** ** ** **** * *** ** * * * * consensus_5618#0 AAAATTTTGATAATTTCTTACGTGGCAATGGAAAACTNCCACATCTGCTTACGATACTTC 691 consensus_5618#1 CT---------------------------------------------------------- 700 consensus_5618#0 GAGCAAGACCCCAACTATCGGAATTATAATTGACCGAAATTCTGGAAGAATTGGTTGAAT 751 consensus_5618#1 ------------------------------------------------------------ consensus_5618#0 CTTTGAAGTAGTGTTTAAAATAACCAAGTGAACCAATCGATACAATCGTGATGCTATCGC 811 consensus_5618#1 ------------------------------------------------------------ consensus_5618#0 TAC 814 consensus_5618#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||