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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1681 fasta sequence
[CAGAACAGGTTATAGTTTTTATTGATCAATTTTTTTCGCTTCATTTTGTTTTTTTCCACATATTTTTTAAAAAAGGAGTTCCGTAATCTGTAAAGATCAATTCAGGTCCCTGTCTTCTAAGTACTTGTATTCAAACGTAAACCCTTCCTTTTTACGCTGGCCCCATTTTTCATAGTCAAAATAGATGTAGGTTCCCTGCTCGTATTCTTCGTTGATCACTTTCGGTTCTTCGTGGCGTTGAAACCACATCATATATTTCGTATGAAATCTCCAGCTCTGCTTTTTCAGCGCCTTCGCGGCTAGATATTGAGCCTTCGTTCCCTCCATGTAGTAAAACACGAAGAAGAGCGTTTCGGGTGACAGACGCTGGAAAAACTCAACCGTTTCAGAATGTGGAAGTTGTTGCTGTGGATAGTGCGGTGGAGTTTGAACAGGTTGACGTTGCAAGTACGGCCTTAGCCTCTCTGAATCGCTTGGTGTTGGCAGATGATAGTAGGCGGCTTCCATGAGTTGGAATTGTATTTGATGCTCCTTCTGCAGCTTGGACGTGCCCAGCGGTGCCACGCCGAGTAGCGGCGGTATGCAGGCCTCGTGCGTACCGGCCGACGGCTTCATGCCTCCGGGGCCGCCGCCGCCACCGCCACCAGCACTGTTCACGTTGGCGGCGTTCGAAATACTAGAGTTAGTGTTGATGATCGTGTTCGGTCCGTTCGTGATGGCGGCAGTAGCCGATGACGTCGGCAACAGGTTGTTGCCCGCGTTGGCTCCCGCCGGCACGCCGCTCGCGTCGACCATTAACGACTGGCCGGCGCCG-CGCCGCCACCGCCACCGGACTGTGGTTGGGGTGTTTGATTCGAAGGAACTGGCCCAGCCTGTCTCGAATCTGCTGGCTGTGGTTGTGGTTGCTGCTGTTGCGATTGTTGCTGCTGCTGTTGTTGCTGCTGTTGCTGCTGCTG-T--TGTTGCTGCTGCTGCTGTAGCTGATCAGCTGCCGCGACAAATGCGGATGCTTGTGCTGCTGCTGCTGCAGCTGCAGCTTGTTGCGCAGTGGTGGCTGCGGCTGCCGCGACCGCCGCTGCACCCTGGGTATTCGACGATTGTTGCTGTTGGCTCTGCTGCTGCTGCTG-T-CTGTTGCTGCTGCATTAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTCTTGCGCGAGTGCTGTGGGACCGTTCAACAACTGT---TGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGGAGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGTACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAGCATGGAATTCTGACCGGGAGGAATCTG---------CTGCTGCTG-TGC---GCTTGCTGCTGCTGTTG-TGCGCCTG-TGCGCCTGC---TGCTGCTGTTGTGAAGATGCGTTCGACTGTGTCGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGGTAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGATGTATTAATAATCTGACTGAGGCTG]
[+] EMBL CNS09ENE [CAGAACAGGTTATAGTTTTTATTGATCAATTTTTTTCGCTTCATTTTGTTTTTTTCCACATATTTTTTAAAAAAGGAGTTCCGTAATCTGTAAAGATCAATTCAGGTCCCTGTCTTCTAAGTACTTGTATTCAAACGTAAACCCTTCCTTTTTACGCTGGCCCCATTTTTCATAGTCAAAATAGATGTAGGTTCCCTGCTCGTATTCTTCGTTGATCACTTTCGGTTCTTCGTGGCGTTGAAACCACATCATATATTTCGTATGAAATCTCCAGCTCTGCTTTTTCAGCGCCTTCGCGGCTAGATATTGAGCCTTCGTTCCCTCCATGTAGTAAAACACGAAGAAGAGCGTTTCGGGTGACAGACGCTGGAAAAACTCAACCGTTTCAGAATGTGGAAGTTGTTGCTGTGGATAGTGCGGTGGAGTTTGAACAGGTTGACGTTGCAAGTACGGCCTTAGCCTCTCTGAATCGCTTGGTGTTGGCAGATGATAGTAGGCGGCTTCCATGAGTTGGAATTGTATTTGATGCTCCTTCTGCAGCTTGGACGTGCCCAGCGGTGCCACGCCGAGTAGCGGCGGTATGCAGGCCTCGTGCGTACCGGCCGACGGCTTCATGCCTCCGGGGCCGCCGCCGCCACCGCCACCAGCACTGTTCACGTTGGCGGCGTTCGAAATACTAGAGTTAGTGTTGATGATCGTGTTCGGTCCGTTCGTGATGGCGGCAGTAGCCGATGACGTCGGCAACAGGTTGTTGCCCGCGTTGGCTCCCGCCGGCACGCCGCTCGCGTCGACCATTAACGACTGGCCGGCGCCG CGCCGCCACCGCCACCGGACTGTGGTTGGGGTGTTTGATTCGAAGGAACTGGCCCAGCCTGTCTCGAATCTGCTGGCTGTGGTT ]
[-] EMBL CNS09END [ CGACCATTAACGACTGGGCCGCGCCGCCGCCGCCACCGCCACCGGACTGTGGTTGGGGTGTTTGATTCGAAGGAACTGGCCCAGCCTGTCTCGAATCTGCTGGCTGTGGTTGTGGTTGCTGCTGTTGCGATTGTTGCTGCTGCTGTTGTTGCTGCTGTTGCTGCTGCTG T TGTTGCTGCTGCTGCTGTAGCTGATCAGCTGCCGCGACAAATGCGGATGCTTGTGCTGCTGCTGCTGCAGCTGCAGCTTGTTGCGCAGTGGTGGCTGCGGCTGCCGCGACCGCCGCTGCACCCTGGGTATTCGACGATTGTTGCTGTTGGCTCTGCTGCTGCTGCTG T CTGTTGCTGCTGCATTAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTCTTGCGCGAGTGCTGTGGGACCGTTCAACAACTGT TGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGGAGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGTACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAGCATGGAATTCTGACCGGGAGGAATCTG CTGCTGCTG TGC GCTTGCTGCTGCTGTTG TGCGCCTG TGCGCCTGC TGCTGCTGTTGTGAAGATGCGTTCGACTGTGTCGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGGTAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGATGTATTAATAATCTGACTGAGGCTG]
[-] EMBL BM587328 [ CGATTGTTGCTGCTGCTGTTGTTGTTGCTGTTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGTAGCTGACCAGCCGCCGCGACAAATGCGGATGCTTGTGCTGCTGCTGCTGCAGCTGCAGCTTGTTGCGCAGTGGTGGCTGCGGCTGCCGCGACCGCCGCTGCACCCTGGGTATTCGACGATTGTTGCTGTTGGCTCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCATTAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTCTTGCGCGAGTGCTGTGGGACCGTTCAACAACTGTTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGGAGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGTACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAGCATGGAATTCTGACCGGGAGGAATCTGCTGCTGGGCCTGCTGCTGCTGCTGTGCTTGCTGCTGCTGTTGCTGCGCCTGCTGCGCCTGCTGTTGCTGCTGTTGTGAAGATGCGTTCGACTGTGTCGAAGACGGCACACCAGCACTACTGCTATTCGCGGCGGCGACAACGGCTGCgg ]
consensusID : consensus_5624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[CTGCTGTTGCTGCTGCATTAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTCTTGCGCGAGTGCTGTGGGACCGTTCAACAGCTGTTGCTGCTGCTGTTGCTGCTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGGAGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGTACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAGCATGGAATTCTGACCGGGAGGAATCTGCTGCTGGGCCTGCTGCTGCTGCTGCGCTTGCTGCTGCTGTTGCTGCGCCTGCTGCGCCTGCTGCTGCTGTTGTGAAGATGCGTTCGACTGTGTCGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGGTAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGCGG]
[-] EMBL BM613903 [CTGCTGTTGCTGCTGCATTAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTCTTGCGCGAGTGCTGTGGGACCGTTCAACAGCTGTTGCTGCTGCTGTTGCTGCTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGGAGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGTACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAGCATGGAATTCTGACCGGGAGGAATCTGCTGCTGGGCCTGCTGCTGCTGCTGCGCTTGCTGCTGCTGTTGCTGCGCCTGCTGCGCCTGCTGCTGCTGTTGTGAAGATGCGTTCGACTGTGTCGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGGTAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5624#0 CAGAACAGGTTATAGTTTTTATTGATCAATTTTTTTCGCTTCATTTTGTTTTTTTCCACA 60
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 TATTTTTTAAAAAAGGAGTTCCGTAATCTGTAAAGATCAATTCAGGTCCCTGTCTTCTAA 120
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 GTACTTGTATTCAAACGTAAACCCTTCCTTTTTACGCTGGCCCCATTTTTCATAGTCAAA 180
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 ATAGATGTAGGTTCCCTGCTCGTATTCTTCGTTGATCACTTTCGGTTCTTCGTGGCGTTG 240
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 AAACCACATCATATATTTCGTATGAAATCTCCAGCTCTGCTTTTTCAGCGCCTTCGCGGC 300
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 TAGATATTGAGCCTTCGTTCCCTCCATGTAGTAAAACACGAAGAAGAGCGTTTCGGGTGA 360
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 CAGACGCTGGAAAAACTCAACCGTTTCAGAATGTGGAAGTTGTTGCTGTGGATAGTGCGG 420
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 TGGAGTTTGAACAGGTTGACGTTGCAAGTACGGCCTTAGCCTCTCTGAATCGCTTGGTGT 480
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 TGGCAGATGATAGTAGGCGGCTTCCATGAGTTGGAATTGTATTTGATGCTCCTTCTGCAG 540
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 CTTGGACGTGCCCAGCGGTGCCACGCCGAGTAGCGGCGGTATGCAGGCCTCGTGCGTACC 600
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 GGCCGACGGCTTCATGCCTCCGGGGCCGCCGCCGCCACCGCCACCAGCACTGTTCACGTT 660
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 GGCGGCGTTCGAAATACTAGAGTTAGTGTTGATGATCGTGTTCGGTCCGTTCGTGATGGC 720
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 GGCAGTAGCCGATGACGTCGGCAACAGGTTGTTGCCCGCGTTGGCTCCCGCCGGCACGCC 780
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 GCTCGCGTCGACCATTAACGACTGGCCGGCGCCGCGCCGCCACCGCCACCGGACTGTGGT 840
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 TGGGGTGTTTGATTCGAAGGAACTGGCCCAGCCTGTCTCGAATCTGCTGGCTGTGGTTGT 900
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 GGTTGCTGCTGTTGCGATTGTTGCTGCTGCTGTTGTTGCTGCTGTTGCTGCTGCTGTTGT 960
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 TGCTGCTGCTGCTGTAGCTGATCAGCTGCCGCGACAAATGCGGATGCTTGTGCTGCTGCT 1020
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 GCTGCAGCTGCAGCTTGTTGCGCAGTGGTGGCTGCGGCTGCCGCGACCGCCGCTGCACCC 1080
consensus_5624#1 ------------------------------------------------------------
consensus_5624#0 TGGGTATTCGACGATTGTTGCTGTTGGCTCTGCTGCTGCTGCTGTCTGTTGCTGCTGCAT 1140
consensus_5624#1 -----------------------------------------CTG-CTGTTGCTGCTGCAT 18
*** ***************
consensus_5624#0 TAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTC 1200
consensus_5624#1 TAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTC 78
************************************************************
consensus_5624#0 TTGCGCGAGTGCTGTGGGACCGTTCAACAACTGTTGCTGCTGCTGCTGCTGTTGCTGTTG 1260
consensus_5624#1 TTGCGCGAGTGCTGTGGGACCGTTCAACAGCTGTTGCTGCTGCTGTTGCTG--------- 129
***************************** *************** *****
consensus_5624#0 CTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGG 1320
consensus_5624#1 CTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGG 189
************************************************************
consensus_5624#0 AGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGT 1380
consensus_5624#1 AGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGT 249
************************************************************
consensus_5624#0 ACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAG 1440
consensus_5624#1 ACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAG 309
************************************************************
consensus_5624#0 CATGGAATTCTGACCGGGAGGAATCTGCTGCTG---CTG----------TGCGCTTGCTG 1487
consensus_5624#1 CATGGAATTCTGACCGGGAGGAATCTGCTGCTGGGCCTGCTGCTGCTGCTGCGCTTGCTG 369
********************************* *** ***********
consensus_5624#0 CTGCTGTTG-TGCGCCTG-TGCGCCTGCTGCTGCTGTTGTGAAGATGCGTTCGACTGTGT 1545
consensus_5624#1 CTGCTGTTGCTGCGCCTGCTGCGCCTGCTGCTGCTGTTGTGAAGATGCGTTCGACTGTGT 429
********* ******** *****************************************
consensus_5624#0 CGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGG 1605
consensus_5624#1 CGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGG 489
************************************************************
consensus_5624#0 TAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGATGTATTAAT 1665
consensus_5624#1 TAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGCGG------- 542
************************************************** *
consensus_5624#0 AATCTGACTGAGGCTG 1681
consensus_5624#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||