These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1111 fasta sequence [GAAAGAACTTATTGTAAGCTCATCGGCGTAACTGACGCAAACAAATCGTACAAGTTGTTTCTTTCAAACGGCTTCTTCCTGTTGCCCCCGCTGGTCTACAAGGCATTAAGTGAAAGTTACATAACTTTTAAGCCATGTTAAATCAATACAGTTTGACGAGAGCAGGCATCATTCATCTCCTGGCTCAATGTTCACGCAAGTCACCTTTAAAGGCCTCTTTACACTATGCAATAGAGCGGAACAGATGGTGCTAGCGATAAACGCGTCGTGTCTTACACGAGCGGACGTAGGTTCATTGCTCAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCATTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCATAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCACATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAANGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTTAAGCAAGGAACCGGNCNAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGC-AACTCAGCCTCCTGTACACGCTCCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGAGGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGCCGAGGCAATACCATCATTCCATACTTTGGCCCGTCGATCACGCCGATCGTGGGCCACGTCACGGACTTTGCCCCGGGCCAGCTGCGGCTGAGCACGGACGAGGTGGCCAAAGTGTTTACCGTGCCGGTGGAGCTGTTTGCCAGTGCGGCAAACCGGCGACACACGCAGTACCGGGCCAACTACACCATGCCGGTGTTTGTGAACGGAGACGAGACCGTCTGGG] [+] EMBL BX627408 [GAAAGAACTTATTGTAAGCTCATCGGCGTAACTGACGCAAACAAATCGTACAAGTTGTTTCTTTCAAACGGCTTCTTCCTGTTGCCCCCGCTGGTCTACAAGGCATTAAGTGAAAGTTACATAACTTTTAAGCCATGTTAAATCAATACAGTTTGACGAGAGCAGGCATCATTCATCTCCTGGCTCAATGTTCACGCAAGTCACCTTTAAAGGCCTCTTTACACTATGCAATAGAGCGGAACAGATGGTGCTAGCGATAAACGCGTCGTGTCTTACACGAGCGGACGTAGGTTCATTGCTCAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCATTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCATAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCACATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAANGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTTAAGCAAGGAACCGGNCNAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGC AACTCAGCCTCCTGTACACGCTCCCGGTCT ] [+] EMBL BX618012 [ CGAGCGGACGTAGGTTCATTGCTCAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCATTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCATAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCACATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAAGTTTCCGAGTTGCTGCATCTCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGC ] [+] EMBL BX611109 [ TATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACG TTTAAGCAAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAACTCAGCCTCCTGTACACGCT CCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGAGGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGCCGAGGCAATACCATCATTCCATACTTTGGCCCGTCGATCACGCCGATCGTGGGCCACGTCACGGACTTTGCCCCGGGCCAGCTGCGGCTGAGCACGGACGAGGTGGCCAAAGTGTTTACCGTGCCGGTGGAGCTGTTTGCCAGTGCGGCAAACCGGCGACACACGCAGTACCGGGCCAACTACACCATGCCGGTGTTTGTGAACGGAGACGAGACCGTCTGGG] consensusID : consensus_5626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [TTAACAACATACCCTAGCCCGAATCGTGCACGTTCATCGTAATGCTTCTGCGAAAACCATTCATTTGCCTTCCACATGCCAAATTAAGATATTGCACATTTCCATTCGCATGGGGNTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTAAGCAAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAACTCAGCCTCCTGTACACGCTCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGTTGGTGCACGGTTCAGGCCGAGCTGCCCGCGAGTTGTCCTGTTTTACGCTAATACTAAACGCATCCTCCTCGTTACACAGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGANGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGNCGAGGCAATACCATCATTCCATACTTTGGNCCGTCGAT] [+] EMBL BX620273 [TTAACAACATACCCTAGCCCGAATCGTGCACGTTCATCGTAATGCTTCTGCGAAAACCATTCATTTGCCTTCCACATGCCAAATTAAGATATTGCACATTTCCATTCGCATGGGGNTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTAAGCAAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAACTCAGCCTCCTGTACACGCTCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGTTGGTGCACGGTTCAGGCCGAGCTGCCCGCGAGTTGTCCTGTTTTACGCTAATACTAAACGCATCCTCCTCGTTACACAGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGANGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGNCGAGGCAATACCATCATTCCATACTTTGGNCCGTCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5626#0 GAAAGAACTTATTGTAAGCTCATCGGCGTAACTGACGCAAACAAATCGTACAAGTTGTTT 60 consensus_5626#1 ------------------------------------------------------------ consensus_5626#0 CTTTCAAACGGCTTCTTCCTGTTGCCCCCGCTGGTCTACAAGGCATTAAGTGAAAGTTAC 120 consensus_5626#1 ------------------------------------------------------------ consensus_5626#0 ATAACTTTTAAGCCATGTTAAATCAATACAGTTTGACGAGAGCAGGCATCATTCATCTCC 180 consensus_5626#1 ------------------------------------------------------------ consensus_5626#0 TGGCTCAATGTTCACGCAAGTCACCTTTAAAGGCCTCTTTACACTATGCAATAGAGCGGA 240 consensus_5626#1 ------------------------------------------------------------ consensus_5626#0 ACAGATGGTGCTAGCGATAAACGCGTCGTGTCTTACACGAGCGGACGTAGGTTCATTGCT 300 consensus_5626#1 ------------------------------------------------------------ consensus_5626#0 CAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCA 360 consensus_5626#1 ------------------------------------------------------------ consensus_5626#0 TTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCA 420 consensus_5626#1 --------------TTAACAACATACCCTAGCCCGAATCGTGCAC-------GTTCATCG 39 * *** *** * * * * ** * * consensus_5626#0 TAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCA 480 consensus_5626#1 TAATG--CTTCTGCGAAAACCATTCATTTGCCTTCCACATGCCAAATTA-AGATATTGCA 96 *** * *** ** ** * * * *** * * * * *** ********** consensus_5626#0 CATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTG 540 consensus_5626#1 CATTTCCATTCGCATGGGGNTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTG 156 ******************* **************************************** consensus_5626#0 GTCCCAACACAATGCTGAAGAANGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACG 600 consensus_5626#1 GTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACG 216 ********************** ************************************* consensus_5626#0 TCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTTAAGC 660 consensus_5626#1 TCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTT-AAGC 275 ******************************************************* **** consensus_5626#0 AAGGAACCGGNCNAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAA- 719 consensus_5626#1 AAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAA 335 ********** * ********************************************** consensus_5626#0 CTCAGCCTCCTGTACACGCTCCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTC 779 consensus_5626#1 CTCAGCCTCCTGTACACGCTCC-GGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTC 394 ********************** ************************************* consensus_5626#0 CTTTCCCGG--------------------------------------------------- 788 consensus_5626#1 CTTTCCCGGTTGGTGCACGGTTCAGGCCGAGCTGCCCGCGAGTTGTCCTGTTTTACGCTA 454 ********* consensus_5626#0 ------------------------------CGGCATGAAGGATGCGCGCGATGCCAGCTA 818 consensus_5626#1 ATACTAAACGCATCCTCCTCGTTACACAGGCGGCATGAAGGATGCGCGCGATGCCAGCTA 514 ****************************** consensus_5626#0 CGAAACCTGTGCGGTGCGTGAGTTTGTGGAGGAAACCGGCCTGCCGAGCGAGTCGGTACG 878 consensus_5626#1 CGAAACCTGTGCGGTGCGTGAGTTTGTGGANGAAACCGGCCTGCCGAGCGAGTCGGTACG 574 ****************************** ***************************** consensus_5626#0 CGTTTGGGGCCGAGGCAATACCATCATTCCATACTTTGGCCCGTCGATCACGCCGATCGT 938 consensus_5626#1 CGTTTGGGGNCGAGGCAATACCATCATTCCATACTTTGGNCCGTCGAT------------ 622 ********* ***************************** ******** consensus_5626#0 GGGCCACGTCACGGACTTTGCCCCGGGCCAGCTGCGGCTGAGCACGGACGAGGTGGCCAA 998 consensus_5626#1 ------------------------------------------------------------ consensus_5626#0 AGTGTTTACCGTGCCGGTGGAGCTGTTTGCCAGTGCGGCAAACCGGCGACACACGCAGTA 1058 consensus_5626#1 ------------------------------------------------------------ consensus_5626#0 CCGGGCCAACTACACCATGCCGGTGTTTGTGAACGGAGACGAGACCGTCTGGG 1111 consensus_5626#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||