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Anopheles gambiae
cluster # 5626 cluster # 5626       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5626#0 length = 1111 sequences # 3  
consensus_5626#1 length = 622 sequences # 1  

consensusID : consensus_5626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1111
fasta sequence
                              [GAAAGAACTTATTGTAAGCTCATCGGCGTAACTGACGCAAACAAATCGTACAAGTTGTTTCTTTCAAACGGCTTCTTCCTGTTGCCCCCGCTGGTCTACAAGGCATTAAGTGAAAGTTACATAACTTTTAAGCCATGTTAAATCAATACAGTTTGACGAGAGCAGGCATCATTCATCTCCTGGCTCAATGTTCACGCAAGTCACCTTTAAAGGCCTCTTTACACTATGCAATAGAGCGGAACAGATGGTGCTAGCGATAAACGCGTCGTGTCTTACACGAGCGGACGTAGGTTCATTGCTCAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCATTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCATAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCACATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAANGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTTAAGCAAGGAACCGGNCNAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGC-AACTCAGCCTCCTGTACACGCTCCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGAGGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGCCGAGGCAATACCATCATTCCATACTTTGGCCCGTCGATCACGCCGATCGTGGGCCACGTCACGGACTTTGCCCCGGGCCAGCTGCGGCTGAGCACGGACGAGGTGGCCAAAGTGTTTACCGTGCCGGTGGAGCTGTTTGCCAGTGCGGCAAACCGGCGACACACGCAGTACCGGGCCAACTACACCATGCCGGTGTTTGTGAACGGAGACGAGACCGTCTGGG]

[+] EMBL BX627408             [GAAAGAACTTATTGTAAGCTCATCGGCGTAACTGACGCAAACAAATCGTACAAGTTGTTTCTTTCAAACGGCTTCTTCCTGTTGCCCCCGCTGGTCTACAAGGCATTAAGTGAAAGTTACATAACTTTTAAGCCATGTTAAATCAATACAGTTTGACGAGAGCAGGCATCATTCATCTCCTGGCTCAATGTTCACGCAAGTCACCTTTAAAGGCCTCTTTACACTATGCAATAGAGCGGAACAGATGGTGCTAGCGATAAACGCGTCGTGTCTTACACGAGCGGACGTAGGTTCATTGCTCAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCATTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCATAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCACATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAANGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTTAAGCAAGGAACCGGNCNAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGC AACTCAGCCTCCTGTACACGCTCCCGGTCT                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX618012             [                                                                                                                                                                                                                                                                                     CGAGCGGACGTAGGTTCATTGCTCAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCATTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCATAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCACATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAAGTTTCCGAGTTGCTGCATCTCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX611109             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACG TTTAAGCAAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAACTCAGCCTCCTGTACACGCT CCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGAGGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGCCGAGGCAATACCATCATTCCATACTTTGGCCCGTCGATCACGCCGATCGTGGGCCACGTCACGGACTTTGCCCCGGGCCAGCTGCGGCTGAGCACGGACGAGGTGGCCAAAGTGTTTACCGTGCCGGTGGAGCTGTTTGCCAGTGCGGCAAACCGGCGACACACGCAGTACCGGGCCAACTACACCATGCCGGTGTTTGTGAACGGAGACGAGACCGTCTGGG]


>consensus_5626#0 GAAAGAACTTATTGTAAGCTCATCGGCGTAACTGACGCAAACAAATCGTACAAGTTGTTT CTTTCAAACGGCTTCTTCCTGTTGCCCCCGCTGGTCTACAAGGCATTAAGTGAAAGTTAC ATAACTTTTAAGCCATGTTAAATCAATACAGTTTGACGAGAGCAGGCATCATTCATCTCC TGGCTCAATGTTCACGCAAGTCACCTTTAAAGGCCTCTTTACACTATGCAATAGAGCGGA ACAGATGGTGCTAGCGATAAACGCGTCGTGTCTTACACGAGCGGACGTAGGTTCATTGCT CAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCA TTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCA TAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCA CATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTG GTCCCAACACAATGCTGAAGAANGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACG TCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTTAAGC AAGGAACCGGNCNAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAC TCAGCCTCCTGTACACGCTCCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCC TTTCCCGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAG TTTGTGGAGGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGCCGAGGCAATACC ATCATTCCATACTTTGGCCCGTCGATCACGCCGATCGTGGGCCACGTCACGGACTTTGCC CCGGGCCAGCTGCGGCTGAGCACGGACGAGGTGGCCAAAGTGTTTACCGTGCCGGTGGAG CTGTTTGCCAGTGCGGCAAACCGGCGACACACGCAGTACCGGGCCAACTACACCATGCCG GTGTTTGTGAACGGAGACGAGACCGTCTGGG



consensusID : consensus_5626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence
                              [TTAACAACATACCCTAGCCCGAATCGTGCACGTTCATCGTAATGCTTCTGCGAAAACCATTCATTTGCCTTCCACATGCCAAATTAAGATATTGCACATTTCCATTCGCATGGGGNTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTAAGCAAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAACTCAGCCTCCTGTACACGCTCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGTTGGTGCACGGTTCAGGCCGAGCTGCCCGCGAGTTGTCCTGTTTTACGCTAATACTAAACGCATCCTCCTCGTTACACAGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGANGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGNCGAGGCAATACCATCATTCCATACTTTGGNCCGTCGAT]

[+] EMBL BX620273             [TTAACAACATACCCTAGCCCGAATCGTGCACGTTCATCGTAATGCTTCTGCGAAAACCATTCATTTGCCTTCCACATGCCAAATTAAGATATTGCACATTTCCATTCGCATGGGGNTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTAAGCAAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAACTCAGCCTCCTGTACACGCTCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGTTGGTGCACGGTTCAGGCCGAGCTGCCCGCGAGTTGTCCTGTTTTACGCTAATACTAAACGCATCCTCCTCGTTACACAGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGANGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGNCGAGGCAATACCATCATTCCATACTTTGGNCCGTCGAT]


>consensus_5626#1 TTAACAACATACCCTAGCCCGAATCGTGCACGTTCATCGTAATGCTTCTGCGAAAACCAT TCATTTGCCTTCCACATGCCAAATTAAGATATTGCACATTTCCATTCGCATGGGGNTTAT AAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAGG TTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCG CCCGCTTTCAAGCGCTTCCGAAGCTACGTTTAAGCAAGGAACCGGCCAAGAAGGAAGCGG CGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAACTCAGCCTCCTGTACACGCTCCGGT CTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGTTGGTGCACGGTTCAGG CCGAGCTGCCCGCGAGTTGTCCTGTTTTACGCTAATACTAAACGCATCCTCCTCGTTACA CAGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTG TGGANGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGNCGAGGCAATACCATCA TTCCATACTTTGGNCCGTCGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5626#0      GAAAGAACTTATTGTAAGCTCATCGGCGTAACTGACGCAAACAAATCGTACAAGTTGTTT 60
consensus_5626#1      ------------------------------------------------------------
                                                                                  

consensus_5626#0      CTTTCAAACGGCTTCTTCCTGTTGCCCCCGCTGGTCTACAAGGCATTAAGTGAAAGTTAC 120
consensus_5626#1      ------------------------------------------------------------
                                                                                  

consensus_5626#0      ATAACTTTTAAGCCATGTTAAATCAATACAGTTTGACGAGAGCAGGCATCATTCATCTCC 180
consensus_5626#1      ------------------------------------------------------------
                                                                                  

consensus_5626#0      TGGCTCAATGTTCACGCAAGTCACCTTTAAAGGCCTCTTTACACTATGCAATAGAGCGGA 240
consensus_5626#1      ------------------------------------------------------------
                                                                                  

consensus_5626#0      ACAGATGGTGCTAGCGATAAACGCGTCGTGTCTTACACGAGCGGACGTAGGTTCATTGCT 300
consensus_5626#1      ------------------------------------------------------------
                                                                                  

consensus_5626#0      CAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCA 360
consensus_5626#1      ------------------------------------------------------------
                                                                                  

consensus_5626#0      TTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCA 420
consensus_5626#1      --------------TTAACAACATACCCTAGCCCGAATCGTGCAC-------GTTCATCG 39
                                    *  ***  ***    * *     *  *  **        *    * 

consensus_5626#0      TAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCA 480
consensus_5626#1      TAATG--CTTCTGCGAAAACCATTCATTTGCCTTCCACATGCCAAATTA-AGATATTGCA 96
                      *** *  ***   ** **    *   * *  *** *   * *  * *** **********

consensus_5626#0      CATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTG 540
consensus_5626#1      CATTTCCATTCGCATGGGGNTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTG 156
                      ******************* ****************************************

consensus_5626#0      GTCCCAACACAATGCTGAAGAANGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACG 600
consensus_5626#1      GTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACG 216
                      ********************** *************************************

consensus_5626#0      TCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTTAAGC 660
consensus_5626#1      TCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTT-AAGC 275
                      ******************************************************* ****

consensus_5626#0      AAGGAACCGGNCNAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAA- 719
consensus_5626#1      AAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAA 335
                      ********** * ********************************************** 

consensus_5626#0      CTCAGCCTCCTGTACACGCTCCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTC 779
consensus_5626#1      CTCAGCCTCCTGTACACGCTCC-GGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTC 394
                      ********************** *************************************

consensus_5626#0      CTTTCCCGG--------------------------------------------------- 788
consensus_5626#1      CTTTCCCGGTTGGTGCACGGTTCAGGCCGAGCTGCCCGCGAGTTGTCCTGTTTTACGCTA 454
                      *********                                                   

consensus_5626#0      ------------------------------CGGCATGAAGGATGCGCGCGATGCCAGCTA 818
consensus_5626#1      ATACTAAACGCATCCTCCTCGTTACACAGGCGGCATGAAGGATGCGCGCGATGCCAGCTA 514
                                                    ******************************

consensus_5626#0      CGAAACCTGTGCGGTGCGTGAGTTTGTGGAGGAAACCGGCCTGCCGAGCGAGTCGGTACG 878
consensus_5626#1      CGAAACCTGTGCGGTGCGTGAGTTTGTGGANGAAACCGGCCTGCCGAGCGAGTCGGTACG 574
                      ****************************** *****************************

consensus_5626#0      CGTTTGGGGCCGAGGCAATACCATCATTCCATACTTTGGCCCGTCGATCACGCCGATCGT 938
consensus_5626#1      CGTTTGGGGNCGAGGCAATACCATCATTCCATACTTTGGNCCGTCGAT------------ 622
                      ********* ***************************** ********            

consensus_5626#0      GGGCCACGTCACGGACTTTGCCCCGGGCCAGCTGCGGCTGAGCACGGACGAGGTGGCCAA 998
consensus_5626#1      ------------------------------------------------------------
                                                                                  

consensus_5626#0      AGTGTTTACCGTGCCGGTGGAGCTGTTTGCCAGTGCGGCAAACCGGCGACACACGCAGTA 1058
consensus_5626#1      ------------------------------------------------------------
                                                                                  

consensus_5626#0      CCGGGCCAACTACACCATGCCGGTGTTTGTGAACGGAGACGAGACCGTCTGGG 1111
consensus_5626#1      -----------------------------------------------------
                                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)