These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1135 fasta sequence [CCGAATTGATGTCGCGGGTCGGACGCAGTTTTGTTTACCTTTTTTCCCCCCCACGGGTACCGCGAGGCTTTGCGACACACAAAATTTGCTTGGTCCGCGAAAACGGCTCCCCTCGCTGCCCCTCCGCAGAAGGAATTGACAGTAATTCCGCTTTCCCGTTCCTTTGTGTGCACGCAGTAAGGTACCCGGCACGGAGTAAGAAACAATAATGGTGCTGCCAACACCGTACAAGCCATCTTTGCCGCCCGCTTCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGTGTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGACGGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGTGGCGAGCAGACGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTTAACAGGCTGCGCACGGAAGATCTTT-----CCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACC-GGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGAAAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACTGAAAACTATCTGCTGCTCACCAGCATGAACGAGGTGATCTTTTGGGACTGGAAGAACGACAAAACGTACACGACGGGAATGTACAGCGATTGCAAGTGTCGCTTCCTGCACGTGACGCAGGATCTGCGGCTGATTACTGGCATTTCGCAAACGCAAACGCACGTGATGGCGGGCATCGGCAAGAACGTGGAGGAGGTTGAGCCGGAGTATCTGATGGTGTCGTTCCTGCGCAGCCTTAGCTTGATGTTGGACAAGCTCGAGCTGACGCTGTCGACGCAGGTCGACCATCTGCTGCAGCTGGGAATGAGCAAGCAGTGCCTTATCTGGATACATCTGCTGCAAACCATCAA] [+] EMBL BM651416 [CCGAATTGATGTCGCGGGTCGGACGCAGTTTTGTTTACCTTTTTTCCCCCCCACGGGTACCGCGAGGCTTTGCGACACACAAAATTTGCTTGGTCCGCGAAAACGGCTCCCCTCGCTGCCCCTCCGCAGAAGGAATTGACAGTAATTCCGCTTTCCCGTTCCTTTGTGTGCACGCAGTAAGGTACCCGGCACGGAGTAAGAAACAATAATGGTGCTGCCAACACCGTACAAGCCATCTTTGCCGCCCGCTTCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGTGTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGACGGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGTGGCGAGCAGACGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTTAACAGGCTGCGCACGGAAGATCTTT CCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGGTCCGTGTGGACGCTGGCTTTTCACCCAA ] [+] EMBL BM636320 [ ccgCGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTGAACAGGCTGCGCACGGAAGATCTTTGTAAGCCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACC GGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGAAAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACTGAAAACTATCTGCTGCTCACCAGCATGAACGAGGTGATCTTTTGGGACTGGAAGAACGACAAAACGTACACGACGGGAATGTACAGCGATTGCAAGTGTCGCTTCCTGCACGTGACGCAGGATCTGCGGCTGATTACTGGCATTTCGCAAACGCAAACGCACGTGATGGCGGGCATCGGCAAGAACGTGGAGGAGGTTGAGCCGGAGTATCTGATGGTGTCGTTCCTGCGCAGCCTTAGCTTGATGTTGGACAAGCTCG ] [+] EMBL BX604105 [ GTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACC GGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGAAAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACTGAAAACTATCTGCTGCTCACCAGCATGAACGAGGTGATCTTTTGGGACTGGAAGAACGACAAAACGTACACGACGGGAATGTACAGCGATTGCAAGTGTCGCTTCCTGCACGTGACGCAGGATCTGCGGCTGATTACTGGCATTTCGCAAACGCAAACGCACGTGATGGCGGGCATCGGCAAGAACGTGGAGGAGGTTGAGCCGGAGTATCTGATGGTGTCGTTCCTGCGCAGCCTTAGCTTGATGTTGGACAAGCTCGAGCTGACGCTGTCGACGCAGGTCGACCATCTGCTGCAGCTGGGAATGAGCAAGCAGTGCCTTATCTGGATACATCTGCTGCAAACCATCAA] consensusID : consensus_5629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCCATCTTTGCCGCCCGCTCCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGTGTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGACGGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGCGGCGAGCAGACGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTGAACAGGCTGCGCACGGAAGATCTTTGTAAGCCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGACAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACGGAAAACTATCTGCTGCTCACCAGCAT] [+] EMBL BM587556 [CCGCCCACGCGTCCGCCCACGCGTCCGGCCATCTTTGCCGCCCGCTCCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGTGTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGACGGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGCGGCGAGCAGACGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTGAACAGGCTGCGCACGGAAGATCTTTGTAAGCCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGACAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACGGAAAACTATCTGCTGCTCACCAGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5629#0 CCGAATTGATGTCGCGGGTCGGACGCAGTTTTGTTTACCTTTTTTCCCCCCCACGGGTAC 60 consensus_5629#1 ------------------------------------------------------------ consensus_5629#0 CGCGAGGCTTTGCGACACACAAAATTTGCTTGGTCCGCGAAAACGGCTCCCCTCGCTGCC 120 consensus_5629#1 ------------------------------------------------------------ consensus_5629#0 CCTCCGCAGAAGGAATTGACAGTAATTCCGCTTTCCCGTTCCTTTGTGTGCACGCAGTAA 180 consensus_5629#1 ------------------------------------------------------------ consensus_5629#0 GGTACCCGGCACGGAGTAAGAAACAATAATGGTGCTGCCAACACCGTACAAGCCATCTTT 240 consensus_5629#1 ----------------------CCGCCCACGCGTCCGCCCACGC-GTCCG-GCCATCTTT 36 * * * * *** ** * ** * ********* consensus_5629#0 GCCGCCCGCTTCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGT 300 consensus_5629#1 GCCGCCCGCTCCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGT 96 ********** ************************************************* consensus_5629#0 GTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGAC 360 consensus_5629#1 GTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGAC 156 ************************************************************ consensus_5629#0 GGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGTGGCGAGCAGACGTTTCACCA 420 consensus_5629#1 GGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGCGGCGAGCAGACGTTTCACCA 216 *************************************** ******************** consensus_5629#0 GCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTTAACAGGCTGCGCACGGAAGATCTTT- 479 consensus_5629#1 GCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTGAACAGGCTGCGCACGGAAGATCTTTG 276 ********************************* ************************* consensus_5629#0 ----CCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCA 535 consensus_5629#1 TAAGCCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCA 336 ******************************************************** consensus_5629#0 TAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGC 595 consensus_5629#1 TAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGC 396 ************************************************************ consensus_5629#0 ATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGTCCGTGTGGACGTTGGCTTT 655 consensus_5629#1 ATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGTCCGTGTGGACGTTGGCTTT 456 ************************************************************ consensus_5629#0 TCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTA 715 consensus_5629#1 TCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTA 516 ************************************************************ consensus_5629#0 CGTGGAAAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTT 775 consensus_5629#1 CGTGGACAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTT 576 ****** ***************************************************** consensus_5629#0 TCATCCGACTGAAAACTATCTGCTGCTCACCAGCATGAACGAGGTGATCTTTTGGGACTG 835 consensus_5629#1 TCATCCGACGGAAAACTATCTGCTGCTCACCAGCAT------------------------ 612 ********* ************************** consensus_5629#0 GAAGAACGACAAAACGTACACGACGGGAATGTACAGCGATTGCAAGTGTCGCTTCCTGCA 895 consensus_5629#1 ------------------------------------------------------------ consensus_5629#0 CGTGACGCAGGATCTGCGGCTGATTACTGGCATTTCGCAAACGCAAACGCACGTGATGGC 955 consensus_5629#1 ------------------------------------------------------------ consensus_5629#0 GGGCATCGGCAAGAACGTGGAGGAGGTTGAGCCGGAGTATCTGATGGTGTCGTTCCTGCG 1015 consensus_5629#1 ------------------------------------------------------------ consensus_5629#0 CAGCCTTAGCTTGATGTTGGACAAGCTCGAGCTGACGCTGTCGACGCAGGTCGACCATCT 1075 consensus_5629#1 ------------------------------------------------------------ consensus_5629#0 GCTGCAGCTGGGAATGAGCAAGCAGTGCCTTATCTGGATACATCTGCTGCAAACCATCAA 1135 consensus_5629#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||