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Anopheles gambiae
cluster # 5629 cluster # 5629       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5629#0 length = 1135 sequences # 3  
consensus_5629#1 length = 612 sequences # 1  

consensusID : consensus_5629#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1135
fasta sequence
                              [CCGAATTGATGTCGCGGGTCGGACGCAGTTTTGTTTACCTTTTTTCCCCCCCACGGGTACCGCGAGGCTTTGCGACACACAAAATTTGCTTGGTCCGCGAAAACGGCTCCCCTCGCTGCCCCTCCGCAGAAGGAATTGACAGTAATTCCGCTTTCCCGTTCCTTTGTGTGCACGCAGTAAGGTACCCGGCACGGAGTAAGAAACAATAATGGTGCTGCCAACACCGTACAAGCCATCTTTGCCGCCCGCTTCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGTGTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGACGGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGTGGCGAGCAGACGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTTAACAGGCTGCGCACGGAAGATCTTT-----CCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACC-GGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGAAAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACTGAAAACTATCTGCTGCTCACCAGCATGAACGAGGTGATCTTTTGGGACTGGAAGAACGACAAAACGTACACGACGGGAATGTACAGCGATTGCAAGTGTCGCTTCCTGCACGTGACGCAGGATCTGCGGCTGATTACTGGCATTTCGCAAACGCAAACGCACGTGATGGCGGGCATCGGCAAGAACGTGGAGGAGGTTGAGCCGGAGTATCTGATGGTGTCGTTCCTGCGCAGCCTTAGCTTGATGTTGGACAAGCTCGAGCTGACGCTGTCGACGCAGGTCGACCATCTGCTGCAGCTGGGAATGAGCAAGCAGTGCCTTATCTGGATACATCTGCTGCAAACCATCAA]

[+] EMBL BM651416             [CCGAATTGATGTCGCGGGTCGGACGCAGTTTTGTTTACCTTTTTTCCCCCCCACGGGTACCGCGAGGCTTTGCGACACACAAAATTTGCTTGGTCCGCGAAAACGGCTCCCCTCGCTGCCCCTCCGCAGAAGGAATTGACAGTAATTCCGCTTTCCCGTTCCTTTGTGTGCACGCAGTAAGGTACCCGGCACGGAGTAAGAAACAATAATGGTGCTGCCAACACCGTACAAGCCATCTTTGCCGCCCGCTTCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGTGTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGACGGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGTGGCGAGCAGACGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTTAACAGGCTGCGCACGGAAGATCTTT     CCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGGTCCGTGTGGACGCTGGCTTTTCACCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM636320             [                                                                                                                                                                                                                                                                                                                                                                                                                       ccgCGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTGAACAGGCTGCGCACGGAAGATCTTTGTAAGCCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACC GGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGAAAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACTGAAAACTATCTGCTGCTCACCAGCATGAACGAGGTGATCTTTTGGGACTGGAAGAACGACAAAACGTACACGACGGGAATGTACAGCGATTGCAAGTGTCGCTTCCTGCACGTGACGCAGGATCTGCGGCTGATTACTGGCATTTCGCAAACGCAAACGCACGTGATGGCGGGCATCGGCAAGAACGTGGAGGAGGTTGAGCCGGAGTATCTGATGGTGTCGTTCCTGCGCAGCCTTAGCTTGATGTTGGACAAGCTCG                                                                                           ]
[+] EMBL BX604105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACC GGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGAAAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACTGAAAACTATCTGCTGCTCACCAGCATGAACGAGGTGATCTTTTGGGACTGGAAGAACGACAAAACGTACACGACGGGAATGTACAGCGATTGCAAGTGTCGCTTCCTGCACGTGACGCAGGATCTGCGGCTGATTACTGGCATTTCGCAAACGCAAACGCACGTGATGGCGGGCATCGGCAAGAACGTGGAGGAGGTTGAGCCGGAGTATCTGATGGTGTCGTTCCTGCGCAGCCTTAGCTTGATGTTGGACAAGCTCGAGCTGACGCTGTCGACGCAGGTCGACCATCTGCTGCAGCTGGGAATGAGCAAGCAGTGCCTTATCTGGATACATCTGCTGCAAACCATCAA]


>consensus_5629#0 CCGAATTGATGTCGCGGGTCGGACGCAGTTTTGTTTACCTTTTTTCCCCCCCACGGGTAC CGCGAGGCTTTGCGACACACAAAATTTGCTTGGTCCGCGAAAACGGCTCCCCTCGCTGCC CCTCCGCAGAAGGAATTGACAGTAATTCCGCTTTCCCGTTCCTTTGTGTGCACGCAGTAA GGTACCCGGCACGGAGTAAGAAACAATAATGGTGCTGCCAACACCGTACAAGCCATCTTT GCCGCCCGCTTCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGT GTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGAC GGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGTGGCGAGCAGACGTTTCACCA GCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTTAACAGGCTGCGCACGGAAGATCTTTC CCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACG GACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGT TGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGTCCGTGTGGACGTTGGCTTTTCATC CAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGG AAAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATC CGACTGAAAACTATCTGCTGCTCACCAGCATGAACGAGGTGATCTTTTGGGACTGGAAGA ACGACAAAACGTACACGACGGGAATGTACAGCGATTGCAAGTGTCGCTTCCTGCACGTGA CGCAGGATCTGCGGCTGATTACTGGCATTTCGCAAACGCAAACGCACGTGATGGCGGGCA TCGGCAAGAACGTGGAGGAGGTTGAGCCGGAGTATCTGATGGTGTCGTTCCTGCGCAGCC TTAGCTTGATGTTGGACAAGCTCGAGCTGACGCTGTCGACGCAGGTCGACCATCTGCTGC AGCTGGGAATGAGCAAGCAGTGCCTTATCTGGATACATCTGCTGCAAACCATCAA



consensusID : consensus_5629#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCCATCTTTGCCGCCCGCTCCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGTGTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGACGGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGCGGCGAGCAGACGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTGAACAGGCTGCGCACGGAAGATCTTTGTAAGCCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGACAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACGGAAAACTATCTGCTGCTCACCAGCAT]

[+] EMBL BM587556             [CCGCCCACGCGTCCGCCCACGCGTCCGGCCATCTTTGCCGCCCGCTCCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGTGTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGACGGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGCGGCGAGCAGACGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTGAACAGGCTGCGCACGGAAGATCTTTGTAAGCCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGACAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACGGAAAACTATCTGCTGCTCACCAGCAT]


>consensus_5629#1 CCGCCCACGCGTCCGCCCACGCGTCCGGCCATCTTTGCCGCCCGCTCCAGCAAACCTGCC GAACGAAAGGATGCAAAAAATCGATCGTAATATCGTGTACCAGCTAGACAACCGTGAGCG GGGCTATCGAACGCGCAAGATTCGACGGAATGCGACGGCAATGTCGGCCACCCCGGCCAT CATCAGCGCCGGATGCGGCGAGCAGACGTTTCACCAGCTTGCGATTGAAGTGGCCGAGCA GGTGGTGCTGAACAGGCTGCGCACGGAAGATCTTTGTAAGCCCATCAACGATTTGGCCAG TGAAACGGAATCCGTTTTCAACATCGAACAAAGCCATAACGGACTGCTCACTGCCACCGT ACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGCATCGTTGCAGAAAGTTGTCAAATA TCCCACAGGCGACCGGTCCGTGTGGACGTTGGCTTTTCATCCAACGAACGACCAAATCAT CGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTACGTGGACAACCATCTCGTTGGCAC GCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTTTCATCCGACGGAAAACTATCTGCT GCTCACCAGCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5629#0      CCGAATTGATGTCGCGGGTCGGACGCAGTTTTGTTTACCTTTTTTCCCCCCCACGGGTAC 60
consensus_5629#1      ------------------------------------------------------------
                                                                                  

consensus_5629#0      CGCGAGGCTTTGCGACACACAAAATTTGCTTGGTCCGCGAAAACGGCTCCCCTCGCTGCC 120
consensus_5629#1      ------------------------------------------------------------
                                                                                  

consensus_5629#0      CCTCCGCAGAAGGAATTGACAGTAATTCCGCTTTCCCGTTCCTTTGTGTGCACGCAGTAA 180
consensus_5629#1      ------------------------------------------------------------
                                                                                  

consensus_5629#0      GGTACCCGGCACGGAGTAAGAAACAATAATGGTGCTGCCAACACCGTACAAGCCATCTTT 240
consensus_5629#1      ----------------------CCGCCCACGCGTCCGCCCACGC-GTCCG-GCCATCTTT 36
                                             *    * *   * *** ** * ** *  *********

consensus_5629#0      GCCGCCCGCTTCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGT 300
consensus_5629#1      GCCGCCCGCTCCAGCAAACCTGCCGAACGAAAGGATGCAAAAAATCGATCGTAATATCGT 96
                      ********** *************************************************

consensus_5629#0      GTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGAC 360
consensus_5629#1      GTACCAGCTAGACAACCGTGAGCGGGGCTATCGAACGCGCAAGATTCGACGGAATGCGAC 156
                      ************************************************************

consensus_5629#0      GGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGTGGCGAGCAGACGTTTCACCA 420
consensus_5629#1      GGCAATGTCGGCCACCCCGGCCATCATCAGCGCCGGATGCGGCGAGCAGACGTTTCACCA 216
                      *************************************** ********************

consensus_5629#0      GCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTTAACAGGCTGCGCACGGAAGATCTTT- 479
consensus_5629#1      GCTTGCGATTGAAGTGGCCGAGCAGGTGGTGCTGAACAGGCTGCGCACGGAAGATCTTTG 276
                      ********************************* ************************* 

consensus_5629#0      ----CCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCA 535
consensus_5629#1      TAAGCCCATCAACGATTTGGCCAGTGAAACGGAATCCGTTTTCAACATCGAACAAAGCCA 336
                          ********************************************************

consensus_5629#0      TAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGC 595
consensus_5629#1      TAACGGACTGCTCACTGCCACCGTACAGACCAATCGAAGCGTCAATGTGTTTCAAACGGC 396
                      ************************************************************

consensus_5629#0      ATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGTCCGTGTGGACGTTGGCTTT 655
consensus_5629#1      ATCGTTGCAGAAAGTTGTCAAATATCCCACAGGCGACCGGTCCGTGTGGACGTTGGCTTT 456
                      ************************************************************

consensus_5629#0      TCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTA 715
consensus_5629#1      TCATCCAACGAACGACCAAATCATCGCGTTCGGTACGCTTGGCGGTACGGTCCTGGTGTA 516
                      ************************************************************

consensus_5629#0      CGTGGAAAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTT 775
consensus_5629#1      CGTGGACAACCATCTCGTTGGCACGCTGAACGAGCCGGAACCGATCGGATCGCTTTGCTT 576
                      ****** *****************************************************

consensus_5629#0      TCATCCGACTGAAAACTATCTGCTGCTCACCAGCATGAACGAGGTGATCTTTTGGGACTG 835
consensus_5629#1      TCATCCGACGGAAAACTATCTGCTGCTCACCAGCAT------------------------ 612
                      ********* **************************                        

consensus_5629#0      GAAGAACGACAAAACGTACACGACGGGAATGTACAGCGATTGCAAGTGTCGCTTCCTGCA 895
consensus_5629#1      ------------------------------------------------------------
                                                                                  

consensus_5629#0      CGTGACGCAGGATCTGCGGCTGATTACTGGCATTTCGCAAACGCAAACGCACGTGATGGC 955
consensus_5629#1      ------------------------------------------------------------
                                                                                  

consensus_5629#0      GGGCATCGGCAAGAACGTGGAGGAGGTTGAGCCGGAGTATCTGATGGTGTCGTTCCTGCG 1015
consensus_5629#1      ------------------------------------------------------------
                                                                                  

consensus_5629#0      CAGCCTTAGCTTGATGTTGGACAAGCTCGAGCTGACGCTGTCGACGCAGGTCGACCATCT 1075
consensus_5629#1      ------------------------------------------------------------
                                                                                  

consensus_5629#0      GCTGCAGCTGGGAATGAGCAAGCAGTGCCTTATCTGGATACATCTGCTGCAAACCATCAA 1135
consensus_5629#1      ------------------------------------------------------------
                                                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)