cluster # 5632

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Anopheles gambiae
cluster # 5632 cluster # 5632 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5632#0 length = 677 sequences # 1

consensus_5632#1 length = 648 sequences # 3

consensusID : consensus_5632#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [CCGCCCACGCGTCCGCCGAAACCAATTCTACACACTACCTGCGACGATGGATTAAAGCGAAACATCGCAACCCTGAAAAACGCGTAAAAAGAATGTCCTCATACACCGAGTCGAGAGTGGGCGGCAGTTTGGGCGGATTGATCGGCGTCGGTGGAGCGGGAGCGGTCGGCAGCGAGCCACTATGCCTGCAGCGCAAGAGTTCCTGGGTACGGGAGTACCGCGACCTGCAAGCCAACGTCATGTCCGTCGACTGGACCGGCTCGTGGATACTGTTGGCCGGCCGGCGGCTGCTCGCCCTGCAGTCACTGCGCGACTACGAATCGACGGACGCGAGCAACCCGCGGATGGACGACCATCACCATCCGGCGGTCGATTGCGGGCTGCGCAAATTTCAGCGCCACTCCAAGTACGAGGTGACCGCGGCCGAATGGGCCATCTGCCAGCACAGCCAGGAGTACTGCGCGATCGCCACCTGCCAGCAGATCGAGGTCGTCACGTGGCGGTCCGGTGAGCCGACCCTGCAGCACTCGCTTCGAGCGCACACCCGAATGATAACGGACATCGACTGGCACTCGAAGGTGCCGCACCTTCTCGCCAGTTGCTCGATCGACACGTTCACGCATCTGTGGGATCTGCGCGATCCCCGGAAGCCGGTACTGTCGCTGAGTGCCGTCTGT]

[+] EMBL BM587946             [CCGCCCACGCGTCCGCCGAAACCAATTCTACACACTACCTGCGACGATGGATTAAAGCGAAACATCGCAACCCTGAAAAACGCGTAAAAAGAATGTCCTCATACACCGAGTCGAGAGTGGGCGGCAGTTTGGGCGGATTGATCGGCGTCGGTGGAGCGGGAGCGGTCGGCAGCGAGCCACTATGCCTGCAGCGCAAGAGTTCCTGGGTACGGGAGTACCGCGACCTGCAAGCCAACGTCATGTCCGTCGACTGGACCGGCTCGTGGATACTGTTGGCCGGCCGGCGGCTGCTCGCCCTGCAGTCACTGCGCGACTACGAATCGACGGACGCGAGCAACCCGCGGATGGACGACCATCACCATCCGGCGGTCGATTGCGGGCTGCGCAAATTTCAGCGCCACTCCAAGTACGAGGTGACCGCGGCCGAATGGGCCATCTGCCAGCACAGCCAGGAGTACTGCGCGATCGCCACCTGCCAGCAGATCGAGGTCGTCACGTGGCGGTCCGGTGAGCCGACCCTGCAGCACTCGCTTCGAGCGCACACCCGAATGATAACGGACATCGACTGGCACTCGAAGGTGCCGCACCTTCTCGCCAGTTGCTCGATCGACACGTTCACGCATCTGTGGGATCTGCGCGATCCCCGGAAGCCGGTACTGTCGCTGAGTGCCGTCTGT]




>consensus_5632#0
CCGCCCACGCGTCCGCCGAAACCAATTCTACACACTACCTGCGACGATGGATTAAAGCGA
AACATCGCAACCCTGAAAAACGCGTAAAAAGAATGTCCTCATACACCGAGTCGAGAGTGG
GCGGCAGTTTGGGCGGATTGATCGGCGTCGGTGGAGCGGGAGCGGTCGGCAGCGAGCCAC
TATGCCTGCAGCGCAAGAGTTCCTGGGTACGGGAGTACCGCGACCTGCAAGCCAACGTCA
TGTCCGTCGACTGGACCGGCTCGTGGATACTGTTGGCCGGCCGGCGGCTGCTCGCCCTGC
AGTCACTGCGCGACTACGAATCGACGGACGCGAGCAACCCGCGGATGGACGACCATCACC
ATCCGGCGGTCGATTGCGGGCTGCGCAAATTTCAGCGCCACTCCAAGTACGAGGTGACCG
CGGCCGAATGGGCCATCTGCCAGCACAGCCAGGAGTACTGCGCGATCGCCACCTGCCAGC
AGATCGAGGTCGTCACGTGGCGGTCCGGTGAGCCGACCCTGCAGCACTCGCTTCGAGCGC
ACACCCGAATGATAACGGACATCGACTGGCACTCGAAGGTGCCGCACCTTCTCGCCAGTT
GCTCGATCGACACGTTCACGCATCTGTGGGATCTGCGCGATCCCCGGAAGCCGGTACTGT
CGCTGAGTGCCGTCTGT

consensusID : consensus_5632#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 648
fasta sequence

                              [GCGTCCGCAACCCAGCGCGGACTCCAAAATTGCTGCGCATTTTTTCCGAAACCAATTCTACACACTACCTGCGACGATGGATTAAAGCGAAACATCGCAACCCTGAAAAACGCGTAAAAAGAATGTCCTCATACACCGAGTCGAGAGTGGGCGGCAGTTTGGGCGGATTGATCGGCGTCGGTGGAGCGGGAGCGGTCGGCAGCGAGCCACTATGCCTGCAGCGCAAGAGTTCCTGGGTACGGGAGTACCGCGACCTGCAAGCCAACGTCATGTCCGTCGACTGGACCGGCTCGTGGATACTGTTGGCCGGCCGGCGGCTGCTCGCCCTGCAGTCACTGCGCGACTACGAATCGACGGACGCGAGCAACCCGCGGATGGACGACCATCACCATCCGGCGGTCGATTGCGGGCTGCGCAAATTTCAGCGCCACTCCAAGTACGAGGTGACCGCGGCCGAATGGGCCATCTGCCAGCACAGCCAGGAGTACTGCGCGATCGCCACCTGCCAGC-AGATCGAGGTCGTCACGTGGCGGTCCGGTGAGCCGACCCTGCAGCACTCGCTTCGAGCGCACA-CCCGAATGATAACGGACATCGACTGGCACTCGAAGGTGCCGCACCTTCTCGCCAGTTGCTCGATCGACACGTTCA]

[+] EMBL BM600004             [GCGTCCGCAACCCAGCGCGGACTCCAAAATTGCTGCGCATTTTTTCCGAAACCAATTCTACCCACTTTCTGCAACGATGAATTAAAGCGAAACATCGCAACCCTGAAAAACGCGTAACAAGAATGTCCTCATACACCGAGTCGAGAGTGAGCGGCAGTTTGGGCGGCTTGATCGGCGTCGGCGGAGCGGGAGCGGTCGGCAGCGAGCCACTATGCCTGCAGCGCAAAAGTTCCTGGGTGCGGGAGTACCGCGACCTGCAAGCCAACGTCATGTCCGTCGACTGGACCGGCTCGTGGATACTGTTGGCCGGCCGGCGGCTGCTCGCCCTGCAGTCACTGCGCGACTACGAATCGACGGACGCGAGCAACCCGCGCATGGACGACCATCACCATCCGGCGGTCGATTGCGGGCTGCGCAAATTTCAGCGCCACTCCAAGTACGAGGTGACCGCGGCCGAATGGGCCATCTGCCAGCACAGCCAGGAGTACTGCGCGATCGCCACCTGCCAGCGAGATCGAGGTCGTCACGTGGCGGTCCGGTGAGCCGACCCTGCAGCA                                                                                             ]
[+] EMBL BM633882             [         ACCCA CGCG   TCC GAATTGCTGCGCATTTTTTCCGAAACCAATTCTACACACTACCTGCGACGATGGATTAAAGCGAAACATCGCAACCCTGAAAAACGCGTAAAAAGAATGTCCTCATACACCGAGTCGAGAGTGGGCGGCAGTTTGGGCGGATTGATCGGCGTCGGTGGAGCGGGAGCGGTCGGCAGCGAGCCACTATGCCTGCAGCGCAAGAGTTCCTGGGTACGGGAGTACCGCGACCTGCAAGCCAACGTCATGTCCGTCGACTGGACCGGCTCGTGGATACTGTTGGCCGGCCGGCGGCTGCTCGCCCTGCAGTCACTGCGCGACTACGAATCGACGGACGCGAGCAACCCGCGGATGGACGACCATCACCATCCGGCGGTCGATTGCGGGCTGCGCAAATTTCAGCGCCACTCCAAGTACGAGGTGACCGCGGCCGAATGGGCCATCTGCCAGCACAGCCAGGAGTACTGCGCGATCGCCACCTGCCAGC AGATCGAGGTCGTCACGTGGCGGTCCGGTGAGCCGACCCTGCAGCACTCGCTTCGAGCGCACA CCCGAATGATAACGGACATCGACTGGCACTCGAAGGTGCCGCACCTTCTCGCCAGTTGCTCGATCGACACGT   ]
[+] EMBL BM619234             [                     ccgCAAAATTGCTGCGCATTTTTTCCGAAACCAATTCTACACACTACCTGCGACGATGGATTAAAGCGAAACATCGCAACCCTGAAAAACGCGTAAAAAGAATGTCCTCATACACCGAGTCGAGAGTGGGCGGCAGTTTGGGCGGATTGATCGGCGTCGGTGGAGCGGGAGCGGTCGGCAGCGAGCCACTATGCCTGCAGCGCAAGAGTTCCTGGGTACGGGAGTACCGCGACCTGCAAGCCAACGTCATGTCCGTCGACTGGACCGGCTCGTGGATACTGTTGGCCGGCCGGCGGCTGCTCGCCCTGCAGTCACTGCGCGACTACGAATCGACGGACGCGAGCAACCCGCGGATGGACGACCATCACCATCCGGCGGTCGATTGCGGGCTGCGCAAATTTCAGCGCCACTCCAAGTACGAGGTGACCGCGGCCGAATGGGCCATCTGCCAGCACAGCCAGGAGTACTGCGCGATCGCCACCTGCCAGC AGATCGAGGTCGTCACGTGGCGGTCCGGTGAGCCGACCCTGCAGCACTCGCTTCGAGCGCACACCCCGAATGATAACGGACATCGACTGGCACTCGAAGGTGCCGCACCTTCTCGCCAGTTGCTCGATCGACACGTTCA]




>consensus_5632#1
GCGTCCGCAACCCAGCGCGGACTCCAAAATTGCTGCGCATTTTTTCCGAAACCAATTCTA
CACACTACCTGCGACGATGGATTAAAGCGAAACATCGCAACCCTGAAAAACGCGTAAAAA
GAATGTCCTCATACACCGAGTCGAGAGTGGGCGGCAGTTTGGGCGGATTGATCGGCGTCG
GTGGAGCGGGAGCGGTCGGCAGCGAGCCACTATGCCTGCAGCGCAAGAGTTCCTGGGTAC
GGGAGTACCGCGACCTGCAAGCCAACGTCATGTCCGTCGACTGGACCGGCTCGTGGATAC
TGTTGGCCGGCCGGCGGCTGCTCGCCCTGCAGTCACTGCGCGACTACGAATCGACGGACG
CGAGCAACCCGCGGATGGACGACCATCACCATCCGGCGGTCGATTGCGGGCTGCGCAAAT
TTCAGCGCCACTCCAAGTACGAGGTGACCGCGGCCGAATGGGCCATCTGCCAGCACAGCC
AGGAGTACTGCGCGATCGCCACCTGCCAGCAGATCGAGGTCGTCACGTGGCGGTCCGGTG
AGCCGACCCTGCAGCACTCGCTTCGAGCGCACACCCGAATGATAACGGACATCGACTGGC
ACTCGAAGGTGCCGCACCTTCTCGCCAGTTGCTCGATCGACACGTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5632#0      -----------------------------CCGCC-CACGCGTCCGCCGAAACCAATTCTA 30
consensus_5632#1      GCGTCCGCAACCCAGCGCGGACTCCAAAATTGCTGCGCATTTTTTCCGAAACCAATTCTA 60
                                                     **  * *   *   ***************

consensus_5632#0      CACACTACCTGCGACGATGGATTAAAGCGAAACATCGCAACCCTGAAAAACGCGTAAAAA 90
consensus_5632#1      CACACTACCTGCGACGATGGATTAAAGCGAAACATCGCAACCCTGAAAAACGCGTAAAAA 120
                      ************************************************************

consensus_5632#0      GAATGTCCTCATACACCGAGTCGAGAGTGGGCGGCAGTTTGGGCGGATTGATCGGCGTCG 150
consensus_5632#1      GAATGTCCTCATACACCGAGTCGAGAGTGGGCGGCAGTTTGGGCGGATTGATCGGCGTCG 180
                      ************************************************************

consensus_5632#0      GTGGAGCGGGAGCGGTCGGCAGCGAGCCACTATGCCTGCAGCGCAAGAGTTCCTGGGTAC 210
consensus_5632#1      GTGGAGCGGGAGCGGTCGGCAGCGAGCCACTATGCCTGCAGCGCAAGAGTTCCTGGGTAC 240
                      ************************************************************

consensus_5632#0      GGGAGTACCGCGACCTGCAAGCCAACGTCATGTCCGTCGACTGGACCGGCTCGTGGATAC 270
consensus_5632#1      GGGAGTACCGCGACCTGCAAGCCAACGTCATGTCCGTCGACTGGACCGGCTCGTGGATAC 300
                      ************************************************************

consensus_5632#0      TGTTGGCCGGCCGGCGGCTGCTCGCCCTGCAGTCACTGCGCGACTACGAATCGACGGACG 330
consensus_5632#1      TGTTGGCCGGCCGGCGGCTGCTCGCCCTGCAGTCACTGCGCGACTACGAATCGACGGACG 360
                      ************************************************************

consensus_5632#0      CGAGCAACCCGCGGATGGACGACCATCACCATCCGGCGGTCGATTGCGGGCTGCGCAAAT 390
consensus_5632#1      CGAGCAACCCGCGGATGGACGACCATCACCATCCGGCGGTCGATTGCGGGCTGCGCAAAT 420
                      ************************************************************

consensus_5632#0      TTCAGCGCCACTCCAAGTACGAGGTGACCGCGGCCGAATGGGCCATCTGCCAGCACAGCC 450
consensus_5632#1      TTCAGCGCCACTCCAAGTACGAGGTGACCGCGGCCGAATGGGCCATCTGCCAGCACAGCC 480
                      ************************************************************

consensus_5632#0      AGGAGTACTGCGCGATCGCCACCTGCCAGCAGATCGAGGTCGTCACGTGGCGGTCCGGTG 510
consensus_5632#1      AGGAGTACTGCGCGATCGCCACCTGCCAGCAGATCGAGGTCGTCACGTGGCGGTCCGGTG 540
                      ************************************************************

consensus_5632#0      AGCCGACCCTGCAGCACTCGCTTCGAGCGCACACCCGAATGATAACGGACATCGACTGGC 570
consensus_5632#1      AGCCGACCCTGCAGCACTCGCTTCGAGCGCACACCCGAATGATAACGGACATCGACTGGC 600
                      ************************************************************

consensus_5632#0      ACTCGAAGGTGCCGCACCTTCTCGCCAGTTGCTCGATCGACACGTTCACGCATCTGTGGG 630
consensus_5632#1      ACTCGAAGGTGCCGCACCTTCTCGCCAGTTGCTCGATCGACACGTTCA------------ 648
                      ************************************************            

consensus_5632#0      ATCTGCGCGATCCCCGGAAGCCGGTACTGTCGCTGAGTGCCGTCTGT 677
consensus_5632#1      -----------------------------------------------