cluster # 5633

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Anopheles gambiae
cluster # 5633 cluster # 5633 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5633#0 length = 735 sequences # 2

consensus_5633#1 length = 674 sequences # 2

consensusID : consensus_5633#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 735
fasta sequence

                              [NNGGAACGCACACTCTGGCACGGAACAGCAGCAGCAGCAGCCGCACAGTTCGCCGTGTTCGGGAACCTGTGCGTCACACGCAGAGTTGGCGGTGTGTGAATGTGAAACGGAGATAGAGAGCGAGCGCACGGCTACGGCATCGAACCGAGAAGCGCTTGTGTGTGAGCGAGCGAGTGTGGAAATTGTATCGCGTTGTGTGTGCGTGTGTGTTTTTTTAACTTCCGCGGTGCGATTTGAGTTGGAATTAACCGGTAACCGGACACCGGCCATTCGATTTGTGCCTGTTTTTTTTTGCTTTCCAACAATCTAACTACACTCAACC-GCTCCGCTTTCAGTGCGGGGTGGGCAACCACCCTCCAGTGACGGTGTGAGCTGTATGTGTGAGTGTGTGCGTTTGCAGAACGTTCTACAAGCACGCACGCACCCTGTGACAGCGCTGGCAAACGTCAAAACGACGGAGGGCTTCACCGAAACAAAAGCGGGCAGCGAACGGCGGAGCCAAACACAAATACAAACGTTCGAAAACAACCACCGGCTCTCGTTCGTTCGTGACAGAAGCGTGTGTGTGTGTGAGTGTGTGTGCGTTTCGTGACAACATTAAAACGTTTCTCCCCTCGGCTGGTGTGTGTTGCAGAACCATCATTGTGTGTGCTTTTGTAGCGGCAGTAGACGACAAACACCACAACGCAGTGGTGCTGGAAGAAAGGGGGGGTGCACACGGGTGCGCACGAAATC]

[+] EMBL BX619479             [NNGGAACGCACACTCTGGCACGGAACAGCAGCAGCAGCAGCCGCACAGTTCGCCGTGTTCGGGAACCTGTGCGTCACACGCAGAGTTGGCGGTGTGTGAATGTGAAACGGAGATAGAGAGCGAGCGCACGGCTACGGCATCGAACCGAGAAGCGCTTGTGTGTGAGCGAGCGAGTGTGGAAATTGTATCGCGTTGTGTGTGCGTGTGTGTTTTTTTAACTTCCGCGGTGCGATTTGAGTTGGAATTAACCGGTAACCGGACACCGGCCATTCGATTTGTGCCTGTTTTTTTTTGCTTTCCAACAATCTAACTACACTCAACC GCTCCGCTTTCAGTGCGGGGTGGGCAACCACCCTCCAGTGACGGTGTGAGCTGTATGTGTGAGTGTGTGCGTTTGCAGAACGTTCTACAAGCACGCACGCACCCTGTGACAGCGCTG                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM587994             [                                            ccgaTTCGCCGTGTTCGGGAACCTGTGCGTCACACACAGAGTTGGCGGTGTGTGAATGTGAAACGGAGATAGAGAGCGAGCGCACGGCTACGGCATCGAACCGAGAAGCGCTTGTGTGTGAGCGAGCGAGTGCGGAAATTGAATCGCGTCGTGT    GTGTGTG TTTTTTAACTTCCGCGGTGCGATTTGAGGTGGAATTAACCGGTAACCGGACACCGGCCATTCGATTTGTGCGTGTTTTTTTTTGCTTTCCCAAAATCTAACTACACCTAACCAGCTCCGCTTTCAGTGCGGGGTGGGCAACCACCCTCCAGTGACGGTGTGAGCTGTATGTGTGAGTGTGTGCGTTTGCAGAACGTTCTACAAGCACGCACGCACCCTGTGACAGCACTGGCAAACGTCAAAACGACGGAGGGCTTCACCGAAACAAAAGCGGGCAGCGAACGGCGGAGCCAAACACAAATACAAACGTTCGAAAACAACCACCGGCTCTCGTTCGTTCGTGACAGAAGCGTGTGTGTGTGTGAGTGTGTGTGCGTTTCGTGACAACATTAAAACGTTTCTCCCCTCGGCTGGTGTGTGTTGCAGAACCATCATTGTGTGTGCTTTTGTAGCGGCAGTAGACGACAAACACCACAACGCAGTGGTGCTGGAAGAAAGGGGGGGTGCACACGGGTGCGCACGAAATC]




>consensus_5633#0
NNGGAACGCACACTCTGGCACGGAACAGCAGCAGCAGCAGCCGCACAGTTCGCCGTGTTC
GGGAACCTGTGCGTCACACGCAGAGTTGGCGGTGTGTGAATGTGAAACGGAGATAGAGAG
CGAGCGCACGGCTACGGCATCGAACCGAGAAGCGCTTGTGTGTGAGCGAGCGAGTGTGGA
AATTGTATCGCGTTGTGTGTGCGTGTGTGTTTTTTTAACTTCCGCGGTGCGATTTGAGTT
GGAATTAACCGGTAACCGGACACCGGCCATTCGATTTGTGCCTGTTTTTTTTTGCTTTCC
AACAATCTAACTACACTCAACCGCTCCGCTTTCAGTGCGGGGTGGGCAACCACCCTCCAG
TGACGGTGTGAGCTGTATGTGTGAGTGTGTGCGTTTGCAGAACGTTCTACAAGCACGCAC
GCACCCTGTGACAGCGCTGGCAAACGTCAAAACGACGGAGGGCTTCACCGAAACAAAAGC
GGGCAGCGAACGGCGGAGCCAAACACAAATACAAACGTTCGAAAACAACCACCGGCTCTC
GTTCGTTCGTGACAGAAGCGTGTGTGTGTGTGAGTGTGTGTGCGTTTCGTGACAACATTA
AAACGTTTCTCCCCTCGGCTGGTGTGTGTTGCAGAACCATCATTGTGTGTGCTTTTGTAG
CGGCAGTAGACGACAAACACCACAACGCAGTGGTGCTGGAAGAAAGGGGGGGTGCACACG
GGTGCGCACGAAATC

consensusID : consensus_5633#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 674
fasta sequence

                              [CCGCCGGAATCCTGCGAGAGAGGAGCGCACACTGGCACGGAACACCCGCAGCAACAGCAGCAGTCGCACATTCGCCGTGTTCGGGAACCTGTGCGTCACACACAGAGTTGGCGGTGTGTGAATGTGAAACGGAGATAGAGAGCGAGCGCACGGCTACGGCATCGAACCGAGAAGCGCTTGTGTGTGAGCGAGCGAGTGCGGAAATTGAATCGCGTCGTGTGTGTGTGTGTTTTTTAACTTCCGCGGTGCGATTTGAGTTGGAATTAACCGGTAACCGGACACCGGGCATTCGATTTGTGCGTGTTTTTTTTGCTTTCCAAAAATCTAACTACACCTAACCCGCTCCGCTTTCAGTGCGGGGTGGACAACCACCCTCCAGTGATGGTGTGAGTGTGTGCGTTTGCAGAACGTTCTACAAGCACGCACGCACCCTGTGACAGCGCTGGCAAACGTCAAAACGACGGAGGGCTTCACCGAAACAAAAGCGGGCAGCGAACGGCGGAGCCAAACACAAATACAAACGTTCGAAAACAACCACCGGCTCTCGTTCGTTCGTGACAGAAGCGTGTGAGTGTGAGTGTGTGTGCGTTTCGTGACAACATTAAAACGTTTCTCCCCTCGGCTGGTGTGTGTTGCAGAACCATCATTGTGTGTGCTTTTGTAGCGGCAGTAGA]

[+] EMBL BM634252             [CCGCCGGAATCCTGCGAGAGAGGAGCGCACACTGGCACGGAACACCCGCAGCAACAGCAGCAGTCGCACATTCGCCGTGTTCGGGAACCTGTGCGTCACACACAGAGTTGGCGGTGTGTGAATGTGAAACGGAGATAGAGAGCGAGCGCACGGCTACGGCATCGAACCGAGAAGCGCTTGTGTGTGAGCGAGCGAGTGCGGAAATTGAATCGCGTCGTGTGTGTGTGTGTTTTTTAACTTCCGCGGTGCGATTTGAGTTGGAATTAACCGGTAACCGGACACCGGGCATTCGATTTGTGCGTGTTTTTTTTGCTTTCCAAAAATCTAACTACACCTAACCCGCTCCGCTTTCAGTGCGGGGTGGACAACCACCCTCCAGTGATGGTGTGAGTGTGTGCGTTTGCAGAACGTTCTACAAGCACGCACGCACCCTGTGACAGCGCTGGCAAACGTCAAAACGACGGAGGGCTTCACCGAAACAAAAGCGGGCAGCGAACGGCGGAGCCAAACACAAATACAAACGTTCGAAAACAACCACCGGCTCTCGTTCGTTCGTGACAGAAGCGTGTGAGTGTGAGTGTGTGTGCGTTTCGTGACAACATTAAAACGTTTCTCCCCTCGGCTGGTGTGTGTTGCAGAACCATCATTGTGTGTGCTTTTGT            ]
[+] EMBL BM640410             [          CCGGCGAGAGAGGAGCGCACACTGGCACGGAACACCCGCAGCAACAGCAGCAGTCGCACATTCGCCGTGTTCGGGAACCTGTGCGTCACACACAGAGTTGGCGGTGTGTGAATGTGAAACGGAGATAGAGAGCGAGCGCACGGCTACGGCATCGAACCGAGAAGCGCTTGTGTGTGAGCGAGCGAGTGCGGAAATTGAATCGCGTCGTGTGTGTGTGTGTTTTTTAACTTCCGCGGTGCGATTTGAGTTGGAATTAACCGGTAACCGGACACCGGGCATTCGATTTGTGCGTGTTTTTTTTGCTTTCCAAAAATCTAACTACACCTAACCCGCTCCGCTTTCAGTGCGGGGTGGACAACCACCCTCCAGTGATGGTGTGAGTGTGTGCGTTTGCAGAACGTTCTACAAGCACGCACGCACCCTGTGACAGCGCTGGCAAACGTCAAAACGACGGAGGGCTTCACCGAAACAAAAGCGGGCAGCGAACGGCGGAGCCAAACACAAATACAAACGTTCGAAAACAACCACCGGCTCTCGTTCGTTCGTGACAGAAGCGTGTGAGTGTGAGTGTGTGTGCGTTTCGTGACAACATTAAAACGTTTCTCCCCTCGGCTGGTGTGTGTTGCAGAACCATCATTGTGTGTGCTTTTGTAGCGGCAGTAGA]




>consensus_5633#1
CCGCCGGAATCCTGCGAGAGAGGAGCGCACACTGGCACGGAACACCCGCAGCAACAGCAG
CAGTCGCACATTCGCCGTGTTCGGGAACCTGTGCGTCACACACAGAGTTGGCGGTGTGTG
AATGTGAAACGGAGATAGAGAGCGAGCGCACGGCTACGGCATCGAACCGAGAAGCGCTTG
TGTGTGAGCGAGCGAGTGCGGAAATTGAATCGCGTCGTGTGTGTGTGTGTTTTTTAACTT
CCGCGGTGCGATTTGAGTTGGAATTAACCGGTAACCGGACACCGGGCATTCGATTTGTGC
GTGTTTTTTTTGCTTTCCAAAAATCTAACTACACCTAACCCGCTCCGCTTTCAGTGCGGG
GTGGACAACCACCCTCCAGTGATGGTGTGAGTGTGTGCGTTTGCAGAACGTTCTACAAGC
ACGCACGCACCCTGTGACAGCGCTGGCAAACGTCAAAACGACGGAGGGCTTCACCGAAAC
AAAAGCGGGCAGCGAACGGCGGAGCCAAACACAAATACAAACGTTCGAAAACAACCACCG
GCTCTCGTTCGTTCGTGACAGAAGCGTGTGAGTGTGAGTGTGTGTGCGTTTCGTGACAAC
ATTAAAACGTTTCTCCCCTCGGCTGGTGTGTGTTGCAGAACCATCATTGTGTGTGCTTTT
GTAGCGGCAGTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5633#0      -----------------NNGGAACGCACACTCTGGCACGGAACA------GCAGCAGCAG 37
consensus_5633#1      CCGCCGGAATCCTGCGAGAGAGGAGCGCACACTGGCACGGAACACCCGCAGCAACAGCAG 60
                                         *    ** *** *************      *** ******

consensus_5633#0      CAGCCGCACAGTTCGCCGTGTTCGGGAACCTGTGCGTCACACGCAGAGTTGGCGGTGTGT 97
consensus_5633#1      CAGTCGCACA-TTCGCCGTGTTCGGGAACCTGTGCGTCACACACAGAGTTGGCGGTGTGT 119
                      *** ****** ******************************* *****************

consensus_5633#0      GAATGTGAAACGGAGATAGAGAGCGAGCGCACGGCTACGGCATCGAACCGAGAAGCGCTT 157
consensus_5633#1      GAATGTGAAACGGAGATAGAGAGCGAGCGCACGGCTACGGCATCGAACCGAGAAGCGCTT 179
                      ************************************************************

consensus_5633#0      GTGTGTGAGCGAGCGAGTGTGGAAATTGTATCGCGTTGTGTGTGCGTGTGTGTTTTTTTA 217
consensus_5633#1      GTGTGTGAGCGAGCGAGTGCGGAAATTGAATCGCGTCGTGTGTGTGTGTGT---TTTTTA 236
                      ******************* ******** ******* ******* ******   ******

consensus_5633#0      ACTTCCGCGGTGCGATTTGAGTTGGAATTAACCGGTAACCGGACACCGGCCATTCGATTT 277
consensus_5633#1      ACTTCCGCGGTGCGATTTGAGTTGGAATTAACCGGTAACCGGACACCGGGCATTCGATTT 296
                      ************************************************* **********

consensus_5633#0      GTGCCTGTTTTTTTTTGCTTTCCAACAATCTAACTACACTCAACC-GCTCCGCTTTCAGT 336
consensus_5633#1      GTGCGTGTTTTTTTT-GCTTTCCAAAAATCTAACTACACCTAACCCGCTCCGCTTTCAGT 355
                      **** ********** ********* *************  **** **************

consensus_5633#0      GCGGGGTGGGCAACCACCCTCCAGTGACGGTGTGAGCTGTATGTGTGAGTGTGTGCGTTT 396
consensus_5633#1      GCGGGGTGGACAACCACCCTCCAGTGATGGTGTGAG-------------TGTGTGCGTTT 402
                      ********* ***************** ********             ***********

consensus_5633#0      GCAGAACGTTCTACAAGCACGCACGCACCCTGTGACAGCGCTGGCAAACGTCAAAACGAC 456
consensus_5633#1      GCAGAACGTTCTACAAGCACGCACGCACCCTGTGACAGCGCTGGCAAACGTCAAAACGAC 462
                      ************************************************************

consensus_5633#0      GGAGGGCTTCACCGAAACAAAAGCGGGCAGCGAACGGCGGAGCCAAACACAAATACAAAC 516
consensus_5633#1      GGAGGGCTTCACCGAAACAAAAGCGGGCAGCGAACGGCGGAGCCAAACACAAATACAAAC 522
                      ************************************************************

consensus_5633#0      GTTCGAAAACAACCACCGGCTCTCGTTCGTTCGTGACAGAAGCGTGTGTGTGTGTGAGTG 576
consensus_5633#1      GTTCGAAAACAACCACCGGCTCTCGTTCGTTCGTGACAGAAGCGTGTGAGTGT--GAGTG 580
                      ************************************************ ****  *****

consensus_5633#0      TGTGTGCGTTTCGTGACAACATTAAAACGTTTCTCCCCTCGGCTGGTGTGTGTTGCAGAA 636
consensus_5633#1      TGTGTGCGTTTCGTGACAACATTAAAACGTTTCTCCCCTCGGCTGGTGTGTGTTGCAGAA 640
                      ************************************************************

consensus_5633#0      CCATCATTGTGTGTGCTTTTGTAGCGGCAGTAGACGACAAACACCACAACGCAGTGGTGC 696
consensus_5633#1      CCATCATTGTGTGTGCTTTTGTAGCGGCAGTAGA-------------------------- 674
                      **********************************                          

consensus_5633#0      TGGAAGAAAGGGGGGGTGCACACGGGTGCGCACGAAATC 735
consensus_5633#1      ---------------------------------------