cluster # 564

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Anopheles gambiae
cluster # 564 cluster # 564 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_564#0 length = 652 sequences # 1

consensus_564#1 length = 599 sequences # 1

consensusID : consensus_564#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGACAGTCCGGAAACAACTTGGATCAATTTAAGGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAGGCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTCCCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACCTCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAAGAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGCAACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCCAAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAGATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATATGAAAAAAGGGGGGGTGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTCGACCGATTTCCACATCGAGCATGCTGCGGTTGCGGCGCAACTGGAGGCTGAAGAA]

[+] EMBL BM633894             [CCGCCCACGCGTCCGCCCACGCGTCCGGGACAGTCCGGAAACAACTTGGATCAATTTAAGGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAGGCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTCCCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACCTCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAAGAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGCAACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCCAAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAGATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATATGAAAAAAGGGGGGGTGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTCGACCGATTTCCACATCGAGCATGCTGCGGTTGCGGCGCAACTGGAGGCTGAAGAA]




>consensus_564#0
CCGCCCACGCGTCCGCCCACGCGTCCGGGACAGTCCGGAAACAACTTGGATCAATTTAAG
GGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAGG
CACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTCC
CACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACCT
CCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAAG
AATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGCA
ACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCCA
AGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAGA
TGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATATGAAAAAAGG
GGGGGTGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTCGAC
CGATTTCCACATCGAGCATGCTGCGGTTGCGGCGCAACTGGAGGCTGAAGAA

consensusID : consensus_564#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [CCGATTTTGTGTACGAGGACAGTCCGGAAACAACTTGGATCAATTTAAGGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAGGCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTCCCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACCTCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAAGAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGCAACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCCAAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAGATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATACTGCAAAAGTGGGGGGTGGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTCGACCGATTTCC]

[+] EMBL BM621579             [CCGATTTTGTGTACGAGGACAGTCCGGAAACAACTTGGATCAATTTAAGGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAGGCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTCCCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACCTCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAAGAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGCAACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCCAAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAGATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATACTGCAAAAGTGGGGGGTGGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTCGACCGATTTCC]




>consensus_564#1
CCGATTTTGTGTACGAGGACAGTCCGGAAACAACTTGGATCAATTTAAGGGGAAAATTAC
TAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAGGCACCGATAGAA
AATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTCCCACCGACCCTC
TCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACCTCCAGCGATATC
GATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAAGAATCGAAAGAC
CCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGCAACAAGCTGAAG
GAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCCAAGGAAAAGCGC
TACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAGATGGTACTGGTG
TACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATACTGCAAAAGTGGGGGGTGGGA
GCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTCGACCGATTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_564#0      CCGCCCACGCGTCCGCCCACGCGTCCG-GGACAGTCCGGAAACAACTTGGATCAATTTAA 59
consensus_564#1      ------------CCGATTTTGTGTACGAGGACAGTCCGGAAACAACTTGGATCAATTTAA 48
                                 ***     * ** ** ********************************

consensus_564#0      GGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAG 119
consensus_564#1      GGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAG 108
                     ************************************************************

consensus_564#0      GCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTC 179
consensus_564#1      GCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTC 168
                     ************************************************************

consensus_564#0      CCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACC 239
consensus_564#1      CCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACC 228
                     ************************************************************

consensus_564#0      TCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAA 299
consensus_564#1      TCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAA 288
                     ************************************************************

consensus_564#0      GAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGC 359
consensus_564#1      GAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGC 348
                     ************************************************************

consensus_564#0      AACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCC 419
consensus_564#1      AACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCC 408
                     ************************************************************

consensus_564#0      AAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAG 479
consensus_564#1      AAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAG 468
                     ************************************************************

consensus_564#0      ATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATA-TGAAAAAA 538
consensus_564#1      ATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATACTGCAAAAG 528
                     *************************************************** ** **** 

consensus_564#0      GGGGGGGTGG-AGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTC 597
consensus_564#1      TGGGGGGTGGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTC 588
                      ********* *************************************************

consensus_564#0      GACCGATTTCCACATCGAGCATGCTGCGGTTGCGGCGCAACTGGAGGCTGAAGAA 652
consensus_564#1      GACCGATTTCC-------------------------------------------- 599
                     ***********