These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1682 fasta sequence [TATGTGAAGTATTTTTCCTTCTCAAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAAGTTATTCGCAAGTGATACACTGACTGATCGTGCGTAAGCGTAAGGTGTTATTTAGCGTATCCGCGTCGGGGCCAGTGCGTAAAAGCTGGCAGCGAAAAAGTTAGTTTTCCTCAGGCAGGGCGAGAAGCAAAAGCGAGGTTGCTACCAACACTCACACACATACACACACGGATACACCTTTCTCGGGGTGGCCTACGGTTCTTTTTCGGTGTGTCGACTTGCGGACGGAAAGAGATAGAGTCGCGCTGGTTGGTATACACGACGAGTTGGGTGCGAGAAGCGCAAGCGAGAAAGAGAAGCCCGGGCGACGATGGTGTGGTGCGCCGTTTGTGAATGATGTGCAGTGTGCGTGATGGTGTGTGTGTGACGATCGCCTTCTAGGCAGGTAGGGAAAAGAAGAGGAAGAAGCGGAAGAAGACGGGCGGTGCGGTCGGGTCAGCAGCAATAATATCGGCAGTGACAGGAACAGTAGCAGCAGTGCCAGTGGGGCAAAAGCAACAGCACACGAGCAGTGGAGTAGTGGACGCAGGAGTAGAGGAGGCGAAGAAGCGGGAGCAATTGAGGAAGGGCGGAGAACCCCGTCAAGGAAGACGCGGGAAGGCAAAAGAAAACGCGTAAAAAGAAGCCCGAAACAGCAGCGCAAAATTTGCTCCGAACTCCTCCCGGTGTGTGTGTGCTCGGAGAAGAAGACGTGTGCGTGCGTGCGTGTTTGTGTGTATGTGTGCGGTTGGTAGACGGTCGACGTCGTCGTACAAAATTCTAGCGACACCAGTTACTCCTAACGCGCCGTGTGCGCCATTAAAGCCACACTAGCTACACTTCCGCCCGTTTTTCGGTTCCGCCGTGCACGAGTGTTTGTGGAGGACAAGTGCGGTGGCCTGGAAGCACAGCAACCTCGAAGGGACAACAACGCTGATTGCATTTGCTGAGGCAACATCATCAATATTCCGGAACCGTACAGTTCTTCGTTCAGCTTCATTCCTTCGTCCAGGAAGGCCTGCAAAACTGCGCAAACTTTGCACACACGCT--CACACACACACACGGCCAAGTTTCTGCTCAACACAACTGGGATGTGGATGTGTATGTGTGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAAATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCCCCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGTGCCAGAGAGCAACACACGGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCTGTCAGGCCAAAGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGTGATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTTTGCAGACTAGTGGTCCCACAGACGGTGCGCGTACACTTTTCGCAGTGCAAGCGTCGTTTTGCGCCAGTTCTGTTGTCTGTAGTGTCGGTTTGTCCGAACACCGGAAACACGAAACGGAGAAAAGAAACTTACAACATAAAAAGAAACTGCTTTCACCACACCCGCGTTCACCGTGCAGTGATTTA] [+] EMBL BM588479 [TATGTGAAGTATTTTTCCTTCTCAAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAAGTTATTCGCAAGTGATACACTGACTGATCGTGCGTAAGCGTAAGGTGTTATTTAGCGTATCCGCGTCGGGGCCAGTGCGTAAAAGCTGGCAGCGAAAAAGTTAGTTTTCCTCAGGCAGGGCGAGAAGCAAAAGCGAGGTTGCTACCAACACTCACACACATACACACACGGATACACCTTTCTCGGGGTGGCCTACGGTTCTTTTTCGGTGTGTCGACTTGCGGACGGAAAGAGATAGAGTCGCGCTGGTTGGTATACACGACGAGTTGGGTGCGAGAAGCGCAAGCGAGAAAGAGAAGCCCGGGCGACGATGGTGTGGTGCGCCGTTTGTGAATGATGTGCAGTGTGCGTGATGGTGTGTGTGTGACGATCGCCTTCTAGGCAGGTAGGGAAAAGAAGAGGAAGAAGCGGAAGAAGACGGGCGGTGCGGTCGGGTCAGCAGCAATAATATCGGCAGTGACAGGAACAGTAGCAGCAGTGCCAGTGGGGCAAAAGCAACAGCACACGAGCAGTGGAGTAGTGGACGCAGGAGTAGAGGAGGCGAAGAAGCGGGAGCAATTGAGGAAGGGCGGAGAACCCCGTCAAGGAAGACGCGGGAAG ] [+] EMBL BM597603 [ ccgCACGAGCAGTGGAGTAGTGGACGCAGGAGTAGAGGAGGCGAAGAAGCGGGAGCAATTGAGGAAGGGCGGAGAACCCCGTCAAGGAAGACGCGGGAAGGCAAAAGAAAACGCGTAAAAAGAAGCCCGAAACAGCAGCGCAAAATTTGCTCCGAACTCCTCCCGGTGTGTGTGTGCTCGGAGAAGAAGACGTGTGCGTGCGTGCGTGTTTGTGTGTATGTGTGCGGTTGGTAGACGGTCGACGTCGTCGTACAAAATTCTAGCGACACCAGTTACTCCTAACGCGCCGTGTGCGCCATTAAAGCCACACTAGCTACACTTCCGCCCGTTTTTCGGTTCCGCCGTGCACGAGTGTTTGTGGAGGACAAGTGCGGTGGCCTGGAAGCACAGCAACCTCGAAGGGACAACAACGCTGATTGCATTTGCTGAGGCAACATCATCAATATTCCGGAACCGTACAGTTCTTCGTTCAGCTTCATTCCTTCGTCCAGGAAGGCCTGCAAAACTGCGCAAACTTTGCACACACGCT CACACACACACACGGCCAAGTTTCTGCTCAACACAACTGGGATGTGGATGTGTATGTGTGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAAATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCCCCTTC ] [+] EMBL BM633433 [ ccgCATTCCTTCGTCCAGGAAGGCCTGCAAAACTGCGCAAACTTTGCACACACGCTCACACACACACACACGGGCAAGTTTCTGCTCAACACAACT GGATGTGGATGTGTATGTGTGAGTTGCATGATTCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAAATAAATCATCAGTCTTGAACTTCCAAATCTACACTAGTGCGCTGTGATTAATCCCCGTCCCCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGTGCCAGAGAGCAACACACGGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCTGTCAGGCCAAAGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGTGATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTTTGCAGACTAGTGGTCCCACAGACGGTGCGCGTACACTTTTCGCAGTGCAAGCGTCGTTTTGCGCCAGTTCTGTTGTCTGTAGTGTCGGTTTGTCCGAACACCGGAAACACGAAACGGAGAAAAGAAACTTACAACATAAAAAGAAACTGCTTTCACCACACCCGCGTTCACCGTGCAGTGATTTA] consensusID : consensus_5642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [CCGGTCGAGAAATGGCTACAGTATATGTGAAGTATTTTTCCTTCTCAAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAAGTTATTCGCAAGTGATACACTGACTGATCGTGCGTAAGCGTAAGGTGTTATTTAGCGTATCCGCGTCGGGGCCAGTGCGTAAAAGCTGGCAGCGAAAAAGTTAGTTTTCCTCAGGCAGGGCAAGAAGCAAAAGCGAGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAAATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCCCCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGCGCCAGAGAGCAACACACGGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCTGTCAGGCCAATAGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGTGATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTTTGCAGACTAGTGGTCCCACAGACGGTGCGCGT] [+] EMBL BM609719 [CCGGTCGAGAAATGGCTACAGTATATGTGAAGTATTTTTCCTTCTCAAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAAGTTATTCGCAAGTGATACACTGACTGATCGTGCGTAAGCGTAAGGTGTTATTTAGCGTATCCGCGTCGGGGCCAGTGCGTAAAAGCTGGCAGCGAAAAAGTTAGTTTTCCTCAGGCAGGGCAAGAAGCAAAAGCGAGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAAATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCCCCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGCGCCAGAGAGCAACACACGGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCTGTCAGGCCAATAGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGTGATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTTTGCAGACTAGTGGTCCCACAGACGGTGCGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5642#0 TATGTGAAGTATTTTTCCTTCTCAAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAA 60 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 GTTATTCGCAAGTGATACACTGACTGATCGTGCGTAAGCGTAAGGTGTTATTTAGCGTAT 120 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 CCGCGTCGGGGCCAGTGCGTAAAAGCTGGCAGCGAAAAAGTTAGTTTTCCTCAGGCAGGG 180 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 CGAGAAGCAAAAGCGAGGTTGCTACCAACACTCACACACATACACACACGGATACACCTT 240 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 TCTCGGGGTGGCCTACGGTTCTTTTTCGGTGTGTCGACTTGCGGACGGAAAGAGATAGAG 300 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 TCGCGCTGGTTGGTATACACGACGAGTTGGGTGCGAGAAGCGCAAGCGAGAAAGAGAAGC 360 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 CCGGGCGACGATGGTGTGGTGCGCCGTTTGTGAATGATGTGCAGTGTGCGTGATGGTGTG 420 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 TGTGTGACGATCGCCTTCTAGGCAGGTAGGGAAAAGAAGAGGAAGAAGCGGAAGAAGACG 480 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 GGCGGTGCGGTCGGGTCAGCAGCAATAATATCGGCAGTGACAGGAACAGTAGCAGCAGTG 540 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 CCAGTGGGGCAAAAGCAACAGCACACGAGCAGTGGAGTAGTGGACGCAGGAGTAGAGGAG 600 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 GCGAAGAAGCGGGAGCAATTGAGGAAGGGCGGAGAACCCCGTCAAGGAAGACGCGGGAAG 660 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 GCAAAAGAAAACGCGTAAAAAGAAGCCCGAAACAGCAGCGCAAAATTTGCTCCGAACTCC 720 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 TCCCGGTGTGTGTGTGCTCGGAGAAGAAGACGTGTGCGTGCGTGCGTGTTTGTGTGTATG 780 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 TGTGCGGTTGGTAGACGGTCGACGTCGTCGTACAAAATTCTAGCGACACCAGTTACTCCT 840 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 AACGCGCCGTGTGCGCCATTAAAGCCACACTAGCTACACTTCCGCCCGTTTTTCGGTTCC 900 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 GCCGTGCACGAGTGTTTGTGGAGGACAAG-TGCGGTGGCCTGGAAGCACAGCAACCTCGA 959 consensus_5642#1 --------------CCGGTCGAGAAATGGCTACAGTATATGTGAAGTATTTTTCCTTCTC 46 ** *** * * * * ** **** * * ** consensus_5642#0 AGGGA-CAACAACGCTGATTGCATTTGCTGAGGCAACATCATCAATATTCCGGAACCGTA 1018 consensus_5642#1 AAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAAGTTATTCGCAAGTGATACACTGA 106 * * * ** * * * ** * * ** * ** * * * * consensus_5642#0 CAGTTCTTCGTTCAGCTTCATTCCTTCGTCCAGGAAGGCCTGCAAAACTGCGCAAACTTT 1078 consensus_5642#1 CTGATCGTGCGTAAGCGTAAGGTGTT-ATTTAGCGTATCC------GCGTCGGGGCCAGT 159 * * ** * * *** * * ** * ** ** * ** * * consensus_5642#0 GCACACACGCTCACACACACACACGGCCAAGTTTCTGCTCAACACAACTGGGATGTGGAT 1138 consensus_5642#1 GCGTAAAAGCTGGCA-------GCGAAAAAGTTAGTTTTC--CTCAGGCAGGGCA-AGAA 209 ** * * *** ** ** ***** * ** * ** ** ** consensus_5642#0 GTGTATGTGTGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAA 1198 consensus_5642#1 GCAAAAGCGAGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAA 269 * * * * ************************************************** consensus_5642#0 ATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCC 1258 consensus_5642#1 ATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCC 329 ************************************************************ consensus_5642#0 CCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGTGCCAGAGAGCAACACAC 1318 consensus_5642#1 CCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGCGCCAGAGAGCAACACAC 389 ****************************************** ***************** consensus_5642#0 GGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCT 1378 consensus_5642#1 GGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCT 449 ************************************************************ consensus_5642#0 GTCAGGCCAA-AGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGT 1437 consensus_5642#1 GTCAGGCCAATAGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGT 509 ********** ************************************************* consensus_5642#0 GATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTT 1497 consensus_5642#1 GATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTT 569 ************************************************************ consensus_5642#0 TGCAGACTAGTGGTCCCACAGACGGTGCGCGTACACTTTTCGCAGTGCAAGCGTCGTTTT 1557 consensus_5642#1 TGCAGACTAGTGGTCCCACAGACGGTGCGCGT---------------------------- 601 ******************************** consensus_5642#0 GCGCCAGTTCTGTTGTCTGTAGTGTCGGTTTGTCCGAACACCGGAAACACGAAACGGAGA 1617 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 AAAGAAACTTACAACATAAAAAGAAACTGCTTTCACCACACCCGCGTTCACCGTGCAGTG 1677 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 ATTTA 1682 consensus_5642#1 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Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||