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Anopheles gambiae
cluster # 5646 cluster # 5646       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5646#0 length = 1156 sequences # 3  
consensus_5646#1 length = 826 sequences # 1  

consensusID : consensus_5646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1156
fasta sequence
                              [CCGGGCGGAAGAGAAAAAGCAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAGCTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACATTGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGACGCCGAAAGACAAGGCCGCCATCCGTAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGCCGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAGGAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAATTACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTTGGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAAGTTGTGAACAAGGATCGCTTCCAGGGGCAGAGAGAGCAGCGCAAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAGTACGCGGCATAGCCAGTTGCTAGCATAGTTACTTGTGCGGCACTGTATTAGTATTTTCCCACCAGTTTACATAACACAAAAAACAAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCATAATTCCGACCGATGCCAATTGAAACCTCGACGATCATCACAATCAGACTAATTTGCTCCTAAGCTTACATGCAAGGTAGAATTCCTGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACGACTACTTACAACAGGTTGAAGTTAGTAGACAAACATCCACGCAAAGACAATTTCCCCCTCTGAGAANGAAATGCCACTCACGGGAGTCTATCTCAGCTTGNNTTCGCACGTACTGTAACTGTTATTTGCAGTCATGATAAGCCCTGTGATGATTGCACGCNGCAGCCATATTGTACTATTACACGCAGCGAAACCGCACATTCTCGATGAACNGCGGGCCCCAACGACGACACACACGATCTATTG]

[+] EMBL BM629129             [CCGGGCGGAAGAGAAAAAGCAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAGCTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACATTGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGACGCCGAAAGACAAGGCCGCCATCCGTAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGCCGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAGGAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAATTACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTTGGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAAGTTGTGAACAAGGATCGCTTCCAGGGGCAGAGAGAGCAGCGCAAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM589302             [ ccGGCGGAAGAGAAAAAACAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAGCTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACATTGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGACGCCGAAAGACAAGGCCGCCATCCGCAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGCCGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAGGAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAATTACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTTGGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAAGTTGTGAACAAGGATCGCTTCCTGGGGCAGAGAAGGCAGCGCAAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX619859             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTTCC CGGGCAGAGAGAGCAGCGCGAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGATGATTCACCTTGGAGGACAATGTTTGCTCCGGCGGGATCCGCTGTAAAACTACTCGTTCTTGTAGAAACCGCCCTTTCGGGACACATTCTTGTTAGAAGTACGCGGCATAGCCAGTTGCTAGCATAGTTACTTGTGCGGCACTGTATTAGTATTTTCCCACCAGTTTACATAACACAAAAAACAAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCATAATTCCGACCGATGCCAATTGAAACCTCGACGATCATCACAATCAGACTAATTTGCTCCTAAGCTTACATGCAAGGTAGAATTCCTGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACGACTACTTACAACAGGTTGAAGTTAGTAGACAAACATCCACGCAAAGACAATTTCCCCCTCTGAGAANGAAATGCCACTCACGGGAGTCTATCTCAGCTTGNNTTCGCACGTACTGTAACTGTTATTTGCAGTCATGATAAGCCCTGTGATGATTGCACGCNGCAGCCATATTGTACTATTACACGCAGCGAAACCGCACATTCTCGATGAACNGCGGGCCCCAACGACGACACACACGATCTATTG]


>consensus_5646#0 CCGGGCGGAAGAGAAAAAGCAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAG CTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACAT TGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGAC GCCGAAAGACAAGGCCGCCATCCGTAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGC CGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAG GAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAAT TACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTT GGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAAGTTGTGAACAAGGAT CGCTTCCAGGGGCAGAGAGAGCAGCGCAAACGGTTCTTGCTGTGCAGCACCAACATTTGT CCTTGGAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTAC TCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAGTACGCGGCATAGCC AGTTGCTAGCATAGTTACTTGTGCGGCACTGTATTAGTATTTTCCCACCAGTTTACATAA CACAAAAAACAAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCATA ATTCCGACCGATGCCAATTGAAACCTCGACGATCATCACAATCAGACTAATTTGCTCCTA AGCTTACATGCAAGGTAGAATTCCTGGTAACATGAAGATGAATATTTTAAACACCCAACC ACTCTAGACGACTACTTACAACAGGTTGAAGTTAGTAGACAAACATCCACGCAAAGACAA TTTCCCCCTCTGAGAANGAAATGCCACTCACGGGAGTCTATCTCAGCTTGNNTTCGCACG TACTGTAACTGTTATTTGCAGTCATGATAAGCCCTGTGATGATTGCACGCNGCAGCCATA TTGTACTATTACACGCAGCGAAACCGCACATTCTCGATGAACNGCGGGCCCCAACGACGA CACACACGATCTATTG



consensusID : consensus_5646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 826
fasta sequence
                              [AGAATCGCACGAGGTGCTACGCTTCGATTAACGTTGTGAACCAGATCGCTTCCTGGGGCAGAGAGGGCAGCGCAAACGAGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGTAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAAGTACGCGGCGAGAGCCAGTTGCTAGCATGGTTACTAGTGCGGCACTGTATTAGTATTTCCCACCAGTTTACATAACACAAGAAAGAAGAAACACAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCACTAATTCCGACCGATGCCAATTGAAACCTCGACGATACATCGACAAGTCAGACTAATTTGCGTCCTAAGCTTACATGCAAGGTAGAATTCCCGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACAGACTACTTACAANCAGGTTGANACGTTTACGTAGACAAACATCCACGCCACAAGACAATTTCCCCCTCTTGAACAAAGGAAATTGCCACTCACGGGACTATACTACAGCGTTTGGGGTGTTNCGCCACAATACATGGTAAAACTCGTGACTNTTTTTGCNNGGTCCACTAGATACAGGCCCTCTGTGGATGATTTGGCACCGCCGGGNAGCGCAATATTAGGTACTCATTTACAACCGGCAGTCGGNAAAACCCGNGACATTNCTCCGATTTANCCGGGGGNGGGCCCCCAAACAGANGNAGACACACGACGAATCTANATGANTTGACAGGGT]

[+] EMBL BX469150             [AGAATCGCACGAGGTGCTACGCTTCGATTAACGTTGTGAACCAGATCGCTTCCTGGGGCAGAGAGGGCAGCGCAAACGAGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGTAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAAGTACGCGGCGAGAGCCAGTTGCTAGCATGGTTACTAGTGCGGCACTGTATTAGTATTTCCCACCAGTTTACATAACACAAGAAAGAAGAAACACAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCACTAATTCCGACCGATGCCAATTGAAACCTCGACGATACATCGACAAGTCAGACTAATTTGCGTCCTAAGCTTACATGCAAGGTAGAATTCCCGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACAGACTACTTACAANCAGGTTGANACGTTTACGTAGACAAACATCCACGCCACAAGACAATTTCCCCCTCTTGAACAAAGGAAATTGCCACTCACGGGACTATACTACAGCGTTTGGGGTGTTNCGCCACAATACATGGTAAAACTCGTGACTNTTTTTGCNNGGTCCACTAGATACAGGCCCTCTGTGGATGATTTGGCACCGCCGGGNAGCGCAATATTAGGTACTCATTTACAACCGGCAGTCGGNAAAACCCGNGACATTNCTCCGATTTANCCGGGGGNGGGCCCCCAAACAGANGNAGACACACGACGAATCTANATGANTTGACAGGGT]


>consensus_5646#1 AGAATCGCACGAGGTGCTACGCTTCGATTAACGTTGTGAACCAGATCGCTTCCTGGGGCA GAGAGGGCAGCGCAAACGAGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGTAGCATT TGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAG AAGCCGCCCTTTCGGGACACATTCTTGTTAAAAAGTACGCGGCGAGAGCCAGTTGCTAGC ATGGTTACTAGTGCGGCACTGTATTAGTATTTCCCACCAGTTTACATAACACAAGAAAGA AGAAACACAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCACTAAT TCCGACCGATGCCAATTGAAACCTCGACGATACATCGACAAGTCAGACTAATTTGCGTCC TAAGCTTACATGCAAGGTAGAATTCCCGGTAACATGAAGATGAATATTTTAAACACCCAA CCACTCTAGACAGACTACTTACAANCAGGTTGANACGTTTACGTAGACAAACATCCACGC CACAAGACAATTTCCCCCTCTTGAACAAAGGAAATTGCCACTCACGGGACTATACTACAG CGTTTGGGGTGTTNCGCCACAATACATGGTAAAACTCGTGACTNTTTTTGCNNGGTCCAC TAGATACAGGCCCTCTGTGGATGATTTGGCACCGCCGGGNAGCGCAATATTAGGTACTCA TTTACAACCGGCAGTCGGNAAAACCCGNGACATTNCTCCGATTTANCCGGGGGNGGGCCC CCAAACAGANGNAGACACACGACGAATCTANATGANTTGACAGGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5646#0      CCGGGCGGAAGAGAAAAAGCAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAG 60
consensus_5646#1      ------------------------------------------------------------
                                                                                  

consensus_5646#0      CTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACAT 120
consensus_5646#1      ------------------------------------------------------------
                                                                                  

consensus_5646#0      TGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGAC 180
consensus_5646#1      ------------------------------------------------------------
                                                                                  

consensus_5646#0      GCCGAAAGACAAGGCCGCCATCCGTAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGC 240
consensus_5646#1      ------------------------------------------------------------
                                                                                  

consensus_5646#0      CGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAG 300
consensus_5646#1      ------------------------------------------------------------
                                                                                  

consensus_5646#0      GAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAAT 360
consensus_5646#1      ------------------------------------------------------------
                                                                                  

consensus_5646#0      TACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTT 420
consensus_5646#1      ------------------------------------------------------------
                                                                                  

consensus_5646#0      GGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAA-GTTGTGAACAAGGA 479
consensus_5646#1      --------------AGAATCGCACGAGGTGCTACGCTTCGATTAACGTTGTGAACCAG-A 45
                                     * *  **        * ************* ********* ** *

consensus_5646#0      TCGCTTCCAGGGGCAGAGAGAGCAGCGCAAACG-GTTCTTGCTGTGCAGCACCAACATTT 538
consensus_5646#1      TCGCTTCCTGGGGCAGAGAGGGCAGCGCAAACGAGTTCTTGCTGTGCAGCACCAACATTT 105
                      ******** *********** ************ **************************

consensus_5646#0      GTCCTTGG-AGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAAC 597
consensus_5646#1      GTCCTTGGTAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAAC 165
                      ******** ***************************************************

consensus_5646#0      TACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAA-GTACGCGGC-A 655
consensus_5646#1      TACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAAGTACGCGGCGA 225
                      ************************************************ ********* *

consensus_5646#0      TAGCCAGTTGCTAGCATAGTTACTTGTGCGGCACTGTATTAGTATTTTCCCACCAGTTTA 715
consensus_5646#1      GAGCCAGTTGCTAGCATGGTTACTAGTGCGGCACTGTATTAGTATTT-CCCACCAGTTTA 284
                       **************** ****** ********************** ************

consensus_5646#0      CATAACACAAAAAACAAGAAA--------TCGGTTCGACAAAGAGATTCCAGGATTGCAA 767
consensus_5646#1      CATAACACAAGAAAGAAGAAACACAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAA 344
                      ********** *** ******        *******************************

consensus_5646#0      CATTTCCTTCA-TAATTCCGACCGATGCCAATTGAAACCTCGACGAT-CATC-ACAA-TC 823
consensus_5646#1      CATTTCCTTCACTAATTCCGACCGATGCCAATTGAAACCTCGACGATACATCGACAAGTC 404
                      *********** *********************************** **** **** **

consensus_5646#0      AGACTAATTTGC-TCCTAAGCTTACATGCAAGGTAGAATTCCTGGTAACATGAAGATGAA 882
consensus_5646#1      AGACTAATTTGCGTCCTAAGCTTACATGCAAGGTAGAATTCCCGGTAACATGAAGATGAA 464
                      ************ ***************************** *****************

consensus_5646#0      TATTTTAAACACCCAACCACTCTAGAC-GACTACTTACAAC-AGGTTGAAG---TTA-GT 936
consensus_5646#1      TATTTTAAACACCCAACCACTCTAGACAGACTACTTACAANCAGGTTGANACGTTTACGT 524
                      *************************** ************  *******     *** **

consensus_5646#0      AGACAAACATCCACGCAA--AGACAATTTCCCCCTCTG----AGAANGAAATGCCACTCA 990
consensus_5646#1      AGACAAACATCCACGCCACAAGACAATTTCCCCCTCTTGAACAAAGGAAATTGCCACTCA 584
                      **************** *  *****************     * *   ** *********

consensus_5646#0      CGGGAGTCTATCTCAGCTTGNNTTCGCACGTACTGTAACTGTTATTTGCAGTCATGATAA 1050
consensus_5646#1      CGGGACTATACTACAGCGTTTGGGGTGTTNCGCCACAATACATGGTAAAACTCGTGACTN 644
                      ***** * **   **** *             *   **    *  *   * ** ***   

consensus_5646#0      GCCCTGTGATGATTGCACGCNGCAGCCATATTGT--ACTATTACACGCAGCGAAACCGCA 1108
consensus_5646#1      TTTTTGCNNGGTCCACTAGATACAGGCCCTCTGTGGATGATTTGGCACCGCCGGGNAGCG 704
                          **    *    *  *   *** *    ***  *  ***   * * **      ** 

consensus_5646#0      CATTCTCGA----TGAACNGCGGGCCCCAA-CGACGACACACACGATCTATTG------- 1156
consensus_5646#1      CAATATTAGGTACTCATTTACAACCGGCAGTCGGNAAAACCCGNGACATTNCTCCGATTT 764
                      ** * *       * *    *   *  **  **   * ** *  **  *           

consensus_5646#0      ------------------------------------------------------------
consensus_5646#1      ANCCGGGGGNGGGCCCCCAAACAGANGNAGACACACGACGAATCTANATGANTTGACAGG 824
                                                                                  

consensus_5646#0      --
consensus_5646#1      GT 826
                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)