These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1156 fasta sequence [CCGGGCGGAAGAGAAAAAGCAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAGCTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACATTGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGACGCCGAAAGACAAGGCCGCCATCCGTAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGCCGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAGGAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAATTACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTTGGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAAGTTGTGAACAAGGATCGCTTCCAGGGGCAGAGAGAGCAGCGCAAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAGTACGCGGCATAGCCAGTTGCTAGCATAGTTACTTGTGCGGCACTGTATTAGTATTTTCCCACCAGTTTACATAACACAAAAAACAAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCATAATTCCGACCGATGCCAATTGAAACCTCGACGATCATCACAATCAGACTAATTTGCTCCTAAGCTTACATGCAAGGTAGAATTCCTGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACGACTACTTACAACAGGTTGAAGTTAGTAGACAAACATCCACGCAAAGACAATTTCCCCCTCTGAGAANGAAATGCCACTCACGGGAGTCTATCTCAGCTTGNNTTCGCACGTACTGTAACTGTTATTTGCAGTCATGATAAGCCCTGTGATGATTGCACGCNGCAGCCATATTGTACTATTACACGCAGCGAAACCGCACATTCTCGATGAACNGCGGGCCCCAACGACGACACACACGATCTATTG] [+] EMBL BM629129 [CCGGGCGGAAGAGAAAAAGCAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAGCTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACATTGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGACGCCGAAAGACAAGGCCGCCATCCGTAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGCCGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAGGAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAATTACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTTGGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAAGTTGTGAACAAGGATCGCTTCCAGGGGCAGAGAGAGCAGCGCAAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAA ] [+] EMBL BM589302 [ ccGGCGGAAGAGAAAAAACAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAGCTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACATTGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGACGCCGAAAGACAAGGCCGCCATCCGCAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGCCGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAGGAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAATTACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTTGGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAAGTTGTGAACAAGGATCGCTTCCTGGGGCAGAGAAGGCAGCGCAAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACAC ] [+] EMBL BX619859 [ CTTCC CGGGCAGAGAGAGCAGCGCGAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGATGATTCACCTTGGAGGACAATGTTTGCTCCGGCGGGATCCGCTGTAAAACTACTCGTTCTTGTAGAAACCGCCCTTTCGGGACACATTCTTGTTAGAAGTACGCGGCATAGCCAGTTGCTAGCATAGTTACTTGTGCGGCACTGTATTAGTATTTTCCCACCAGTTTACATAACACAAAAAACAAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCATAATTCCGACCGATGCCAATTGAAACCTCGACGATCATCACAATCAGACTAATTTGCTCCTAAGCTTACATGCAAGGTAGAATTCCTGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACGACTACTTACAACAGGTTGAAGTTAGTAGACAAACATCCACGCAAAGACAATTTCCCCCTCTGAGAANGAAATGCCACTCACGGGAGTCTATCTCAGCTTGNNTTCGCACGTACTGTAACTGTTATTTGCAGTCATGATAAGCCCTGTGATGATTGCACGCNGCAGCCATATTGTACTATTACACGCAGCGAAACCGCACATTCTCGATGAACNGCGGGCCCCAACGACGACACACACGATCTATTG] consensusID : consensus_5646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence [AGAATCGCACGAGGTGCTACGCTTCGATTAACGTTGTGAACCAGATCGCTTCCTGGGGCAGAGAGGGCAGCGCAAACGAGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGTAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAAGTACGCGGCGAGAGCCAGTTGCTAGCATGGTTACTAGTGCGGCACTGTATTAGTATTTCCCACCAGTTTACATAACACAAGAAAGAAGAAACACAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCACTAATTCCGACCGATGCCAATTGAAACCTCGACGATACATCGACAAGTCAGACTAATTTGCGTCCTAAGCTTACATGCAAGGTAGAATTCCCGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACAGACTACTTACAANCAGGTTGANACGTTTACGTAGACAAACATCCACGCCACAAGACAATTTCCCCCTCTTGAACAAAGGAAATTGCCACTCACGGGACTATACTACAGCGTTTGGGGTGTTNCGCCACAATACATGGTAAAACTCGTGACTNTTTTTGCNNGGTCCACTAGATACAGGCCCTCTGTGGATGATTTGGCACCGCCGGGNAGCGCAATATTAGGTACTCATTTACAACCGGCAGTCGGNAAAACCCGNGACATTNCTCCGATTTANCCGGGGGNGGGCCCCCAAACAGANGNAGACACACGACGAATCTANATGANTTGACAGGGT] [+] EMBL BX469150 [AGAATCGCACGAGGTGCTACGCTTCGATTAACGTTGTGAACCAGATCGCTTCCTGGGGCAGAGAGGGCAGCGCAAACGAGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGTAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAAGTACGCGGCGAGAGCCAGTTGCTAGCATGGTTACTAGTGCGGCACTGTATTAGTATTTCCCACCAGTTTACATAACACAAGAAAGAAGAAACACAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCACTAATTCCGACCGATGCCAATTGAAACCTCGACGATACATCGACAAGTCAGACTAATTTGCGTCCTAAGCTTACATGCAAGGTAGAATTCCCGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACAGACTACTTACAANCAGGTTGANACGTTTACGTAGACAAACATCCACGCCACAAGACAATTTCCCCCTCTTGAACAAAGGAAATTGCCACTCACGGGACTATACTACAGCGTTTGGGGTGTTNCGCCACAATACATGGTAAAACTCGTGACTNTTTTTGCNNGGTCCACTAGATACAGGCCCTCTGTGGATGATTTGGCACCGCCGGGNAGCGCAATATTAGGTACTCATTTACAACCGGCAGTCGGNAAAACCCGNGACATTNCTCCGATTTANCCGGGGGNGGGCCCCCAAACAGANGNAGACACACGACGAATCTANATGANTTGACAGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5646#0 CCGGGCGGAAGAGAAAAAGCAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAG 60 consensus_5646#1 ------------------------------------------------------------ consensus_5646#0 CTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACAT 120 consensus_5646#1 ------------------------------------------------------------ consensus_5646#0 TGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGAC 180 consensus_5646#1 ------------------------------------------------------------ consensus_5646#0 GCCGAAAGACAAGGCCGCCATCCGTAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGC 240 consensus_5646#1 ------------------------------------------------------------ consensus_5646#0 CGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAG 300 consensus_5646#1 ------------------------------------------------------------ consensus_5646#0 GAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAAT 360 consensus_5646#1 ------------------------------------------------------------ consensus_5646#0 TACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTT 420 consensus_5646#1 ------------------------------------------------------------ consensus_5646#0 GGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAA-GTTGTGAACAAGGA 479 consensus_5646#1 --------------AGAATCGCACGAGGTGCTACGCTTCGATTAACGTTGTGAACCAG-A 45 * * ** * ************* ********* ** * consensus_5646#0 TCGCTTCCAGGGGCAGAGAGAGCAGCGCAAACG-GTTCTTGCTGTGCAGCACCAACATTT 538 consensus_5646#1 TCGCTTCCTGGGGCAGAGAGGGCAGCGCAAACGAGTTCTTGCTGTGCAGCACCAACATTT 105 ******** *********** ************ ************************** consensus_5646#0 GTCCTTGG-AGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAAC 597 consensus_5646#1 GTCCTTGGTAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAAC 165 ******** *************************************************** consensus_5646#0 TACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAA-GTACGCGGC-A 655 consensus_5646#1 TACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAAGTACGCGGCGA 225 ************************************************ ********* * consensus_5646#0 TAGCCAGTTGCTAGCATAGTTACTTGTGCGGCACTGTATTAGTATTTTCCCACCAGTTTA 715 consensus_5646#1 GAGCCAGTTGCTAGCATGGTTACTAGTGCGGCACTGTATTAGTATTT-CCCACCAGTTTA 284 **************** ****** ********************** ************ consensus_5646#0 CATAACACAAAAAACAAGAAA--------TCGGTTCGACAAAGAGATTCCAGGATTGCAA 767 consensus_5646#1 CATAACACAAGAAAGAAGAAACACAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAA 344 ********** *** ****** ******************************* consensus_5646#0 CATTTCCTTCA-TAATTCCGACCGATGCCAATTGAAACCTCGACGAT-CATC-ACAA-TC 823 consensus_5646#1 CATTTCCTTCACTAATTCCGACCGATGCCAATTGAAACCTCGACGATACATCGACAAGTC 404 *********** *********************************** **** **** ** consensus_5646#0 AGACTAATTTGC-TCCTAAGCTTACATGCAAGGTAGAATTCCTGGTAACATGAAGATGAA 882 consensus_5646#1 AGACTAATTTGCGTCCTAAGCTTACATGCAAGGTAGAATTCCCGGTAACATGAAGATGAA 464 ************ ***************************** ***************** consensus_5646#0 TATTTTAAACACCCAACCACTCTAGAC-GACTACTTACAAC-AGGTTGAAG---TTA-GT 936 consensus_5646#1 TATTTTAAACACCCAACCACTCTAGACAGACTACTTACAANCAGGTTGANACGTTTACGT 524 *************************** ************ ******* *** ** consensus_5646#0 AGACAAACATCCACGCAA--AGACAATTTCCCCCTCTG----AGAANGAAATGCCACTCA 990 consensus_5646#1 AGACAAACATCCACGCCACAAGACAATTTCCCCCTCTTGAACAAAGGAAATTGCCACTCA 584 **************** * ***************** * * ** ********* consensus_5646#0 CGGGAGTCTATCTCAGCTTGNNTTCGCACGTACTGTAACTGTTATTTGCAGTCATGATAA 1050 consensus_5646#1 CGGGACTATACTACAGCGTTTGGGGTGTTNCGCCACAATACATGGTAAAACTCGTGACTN 644 ***** * ** **** * * ** * * * ** *** consensus_5646#0 GCCCTGTGATGATTGCACGCNGCAGCCATATTGT--ACTATTACACGCAGCGAAACCGCA 1108 consensus_5646#1 TTTTTGCNNGGTCCACTAGATACAGGCCCTCTGTGGATGATTTGGCACCGCCGGGNAGCG 704 ** * * * *** * *** * *** * * ** ** consensus_5646#0 CATTCTCGA----TGAACNGCGGGCCCCAA-CGACGACACACACGATCTATTG------- 1156 consensus_5646#1 CAATATTAGGTACTCATTTACAACCGGCAGTCGGNAAAACCCGNGACATTNCTCCGATTT 764 ** * * * * * * ** ** * ** * ** * consensus_5646#0 ------------------------------------------------------------ consensus_5646#1 ANCCGGGGGNGGGCCCCCAAACAGANGNAGACACACGACGAATCTANATGANTTGACAGG 824 consensus_5646#0 -- consensus_5646#1 GT 826 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||