These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 851 fasta sequence [TCTTCTTCTTCTTTCTCGCTCTTTGTCCGCTGCCACACTTCTCGTCTGACTACACCGATCGCGA-CCCAATTACTGACGGACCGCGCACCTTTTGGGGCGTTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCGGAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTATATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGCGGGCACTAATACTGGTCGAGTGTGGTGCTACCGCTTCTGCTTCTGCTTCTGCTGCTGCTGCTTCTACTACTGCTGCTGCTGCTTGCGCCATCTCACCGTTTGCTCAATTTTGTCTCCAAAAAGTGCTCAATGCGCTGGAGCTCTCTCTCTCTCTCTCTCTCTCGCACGCGCTTCT] [-] EMBL BM637928 [TCTTCTTCTTCTTTCTCGCTCTTTGTCCGCTGCCACACTTCTCGTCTGACTACACCGATCGCGA CCCAATTACTGACGGACCGCGCACCTTTTGGGGCGTTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCGGAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTATATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGCGG ] [-] EMBL BM645135 [ GATCGCGACCCCAATTACTGACGGACCGCGCACCTTTTGGGGCGTTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCGGAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGCGG ] [+] EMBL BM657174 [ ccgCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCGGAAGCACTGATTAGGCACTCTGTACGTGTGGAGGA TGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGGCTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTATATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGTGTGCACTAATACTGGTCGAGTGTGGTGCTACCGCTTCTGCTTCTGCTTCTGCTGCTGCTGCTTCTACTACTGCTGCTGCTGCTTGCGCCATCTCACCGTTTGCTCAATTTTGTCTCCAAAAAGTGCTCAATGCGCTGGAGCTCTCTCTCTCTCTCTCTCTCTCGCACGCGCTTCT] consensusID : consensus_5650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CTCGTCTGACTACACCGATCGCGACCCAATTACTGACGGACCGCGCACCTTTTTGGGGCGTTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCCGGAAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTAAATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGCCCACGCGTCCGCGG] [-] EMBL BM589616 [CTCGTCTGACTACACCGATCGCGACCCAATTACTGACGGACCGCGCACCTTTTTGGGGCGTTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCCGGAAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTAAATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGCCCACGCGTCCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5650#0 TCTTCTTCTTCTTTCTCGCTCTTTGTCCGCTGCCACACTTCTCGTCTGACTACACCGATC 60 consensus_5650#1 ----------------------------------------CTCGTCTGACTACACCGATC 20 ******************** consensus_5650#0 GCGACCCAATTACTGACGGACCGCGCACCTTTT-GGGGCGTTGTTATCGCTCTGTTTTGT 119 consensus_5650#1 GCGACCCAATTACTGACGGACCGCGCACCTTTTTGGGGCGTTGTTATCGCTCTGTTTTGT 80 ********************************* ************************** consensus_5650#0 TCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTC 179 consensus_5650#1 TCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTC 140 ************************************************************ consensus_5650#0 TCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTC--------CTTTCCCTTTGTGATTGGGG 231 consensus_5650#1 TCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGG 200 ******************************** ******************** consensus_5650#0 CGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACC--GGAAG 289 consensus_5650#1 CGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCCGGAAAG 260 ***************************************************** * *** consensus_5650#0 CACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTGTTTATTTGTTGGA 349 consensus_5650#1 CACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGT--TTATTTGTTGGA 318 ********************************************** ************ consensus_5650#0 ATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATT 409 consensus_5650#1 ATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATT 378 ************************************************************ consensus_5650#0 TTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACC 469 consensus_5650#1 TTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACC 438 ************************************************************ consensus_5650#0 ACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACC 529 consensus_5650#1 ACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACC 498 ************************************************************ consensus_5650#0 GCCGTATATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGT 589 consensus_5650#1 GCCGTAAATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGT 558 ****** ***************************************************** consensus_5650#0 AGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGT 649 consensus_5650#1 AGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGT 618 ************************************************************ consensus_5650#0 CCGTCTGCCGTTTTCACGGACCCGCGCGGGCACTAATACTGGTCGAGTGTGGTGCTACCG 709 consensus_5650#1 CCGTCTGCCGTTTTCACGGACCCGCGCCCACGCGTCCGCGG------------------- 659 *************************** * * * * consensus_5650#0 CTTCTGCTTCTGCTTCTGCTGCTGCTGCTTCTACTACTGCTGCTGCTGCTTGCGCCATCT 769 consensus_5650#1 ------------------------------------------------------------ consensus_5650#0 CACCGTTTGCTCAATTTTGTCTCCAAAAAGTGCTCAATGCGCTGGAGCTCTCTCTCTCTC 829 consensus_5650#1 ------------------------------------------------------------ consensus_5650#0 TCTCTCTCTCGCACGCGCTTCT 851 consensus_5650#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||