These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1352 fasta sequence [GACCCATGGCGGGAATGTTACGCGAAGCACTCCTTCGCTTCAAGAGAGATTAACACTGTTCCGTTTACGTGAGCGATGAACATTGTGTATAAGCGTGCAATAATTGAAACGGCTCTGTAATGCTGCTCTCTGTTCGACAACGCCTGAGCAAAACGATAGCCAAATTACAACATTTACAAACTATGCGCTCAAATTAGAGTACCGGTTCCGTCAGTCCGTCATGTTTCAACACATATTTTTGGACGTTTTTATGGCAGCTATTTTTATTTTGCAATATCATATATTAAACCAATGTCAAGTAATCATATGTTGTGTACACCCTTTTGAACATTCGCTGCAATTTCTTGTTGTCTTGGAATGTGTTGTACCATCCCTAAAGCCATCCAAACTACTAAACAACATCGTCTTTCAATTACAACTTGGCTTGCTGCCCATCTTGATGCGTTTAACAATGCATGTACAATCGAAACATGTGCGTGCACATAACACATTAGAAACACTGGCCCGCGTACACGGCGGCGGATATGATAAACAGTGTACTGCGTAAATGGCCGGGTGTCTATAAACGCACGTTTAGGATGAAAATTTGAATTTACTATGCAAAAGTCATGTCATTTTGGTTTCCATCGAAGGTTTAGTTTGAAGACGTAAATTGAGAGACAGAGAACAATAGTTTTCAGCAGCGGATGGCCTAACAGTGTTGAAGAGAATAGTTGGGTTCTTAAACAAGTTATATAAAGCTTCCGTTACGGCCTTTTGCAATGTGAGACGTGCGTGGTTGCAAAAAAAAGAAGGGGAATTGGCGGCAGCTAATCAACGAACTCGAAACATTTTGAGGAAGGTGTAGTAACTAAACGAACAGATTAGGTAGTCTAACCAATTGATAGTATGATCTATCTTTACTATTCCGAAAGACTAATCTGATGAAAGTTTTTTTTTTGTTCATTATTATTTTGGTATAGATTTAGGACGTGTACCTACCTACTGACGGGGTTTGGATCAGATCTTGCTCAGTTGGTATATTTTCACCATGATTTATGTTTTATAGTTATTTTTCAAATCAGTAAACCCTCCAATAGCGTATAACCGTAACGTTAGTGATTGCATATGACGAAGTGCATAAACATACGCCAGTATGTGCGCGCGTATGTAGGATTATCGTGTATCGAACCTCGATCTTATTGTATATGCACATCCAGATATGATAATATTTGTCATTGTATTCTCCTTTATGTTACCTTTTATTTTGCTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTTTAATGTGTAATGCGGNGGGGCAGCCAACAAATCAAATCGTGTCTCAGTCCATCCGTTTCCCTTCGCG] [-] EMBL BM652547 [GACCCATGGCGGGAATGTTACGCGAAGCACTCCTTCGCTTCAAGAGAGATTAACACTGTTCCGTTTACGTGAGCGATGAACATTGTGTATAAGCGTGCAATAATTGAAACGGCTCTGTAATGCTGCTCTCTGTTCGACAACGCCTGAGCAAAACGATAGCCAAATTACAACATTTACAAACTATGCGCTCAAATTAGAGTACCGGTTCCGTCAGTCCGTCATGTTTCAACACATATTTTTGGACGTTTTTATGGCAGCTATTTTTATTTTGCAATATCATATATTAAACCAATGTCAAGTAATCATATGTTGTGTACACCCTTTTGAACATTCGCTGCAATTTCTTGTTGTCTTGGAATGTGTTGTACCATCCCTAAAGCCATCCAAACTACTAAACAACATCGTCTTTCAATTACAACTTGGCTTGCTGCCCATCTTGATGCGTTTAACAATGCATGTACAATCGAAACATGTGCGTGCACATAACACATTAGAAACACTGGCCCGCGTACACGGCGGCGGATATGATAAACAGTGTACTGCGTAAATGGCCGGGTGTCTATAAACGCACGTTTAGGATGAAAATTTGAATTTACTATGCAAAAGTCATGTCATTTTGGTTTCCATCGAAGGTTTAGTTTGAAGACGTAAATTGAGAGACAGAGAACAATAGTTTTCAGCAGCGG ] [+] EMBL BX624573 [ GTTTAGGATGAAAATTTGAATTTACTATGCAAAAGTCATGTCATTTTGGTTTCCATCGAAGGTTTAGTTTGAAGACGTAAATTGAGAGACAGAGAACAATAGTTTTCAGCAGATGATGGCCTAACAGTGTTGAAGAGAATAGTTGGGTTCTTAAACAAGTTATATAAAGCTTCCGTTACGGCCTTTTGCAATGTGAGACGTGCGTGGTTGCAAAAAAAAGAAGGGGAATTGGCGGCAGCTAATCAACGAACTCGAAACATTTTGAGGAAGGTGTAGTAACTAAACGAACAGATTAGGTAGTCTAACCAATTGATAGTATGATCTATCTTTACTATTCCGAAAGACTAATCTGATGAAAGTTTTTTTTTTGTTCATTATTATTTTGGTATAGATTTAGGACGTGTACCTACCTACTGACGGGGTTTGGATCAGATCTTGCTCAGTTGGTATATTTTCACCATGATTTATGTTTTATAGTTATTTTTCAAATCAGTAAACCCTCCAATAGCGTATAACCGTAACGTTAGTGATTGCATATGACGAAGTGCATAAACATACGCCAGTATGTGCGCGCGTATGTAGGATTATCGTGTATCGAACCTCGATCTTATTGTATATGCACATCCAGATATGATAATATTTGTCATTGTATTCTCCTTTATGTTACCTTTTATTTTGCTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTTTAATGTGTAATGCGGNGGGGCAGCCAACAAATCAAATCGTGTCTCAGTCCATCCGTTTCCCTTCGCG] consensusID : consensus_5658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CAAGAATCGGCACGAGGAGCAAGTAGATAAATGTGCCGCTTCGACAGGGCAATAGATAAAATGCTAGCAAAACAAAACAATCGATCATGTATGTGTATGTATTTTTTTGGATTATAACGATTATGTATCCTCCATTGTCCTGATTGACGTTTGCCAGTTAGATCCTGCTTTCTTGCTATTTAACATGCAGCATAGAGTACAGTACACATGTTTGTTTTGGTAGGGATTAATACATAGCGAATAGCGAGGTAAAGGACATGTTCGCTACTCGTATATTCGCTGCTTGTTGATCGGTTTGCTGACATCGATCTTAACAGTTCGTTGATCGTCATTGTTGAACCCACGCATACGATCATTGAGATGGAGAATGCCCGCTATGTAGCTTGAATCAACTGGAGCTGGTTTTGCTTATTTGTGAAACGAATCTTTGTTGTCATCTGTTCTGTTTTATGCAAATTCAATCATGAGGAAAAGGTTTATGCAAATATAAGACTACGACGAGTTGAGTTCCGTCACAACACTATCGCATCGGCACATACTACCGGTGCATCATTTGAACCCAGGATTGCTGAACCTGTGGAAACAGAACTGGGAAAATACTTTGTGTAGAAAAGGGGAAAATTATTNTAANNTAAANATGGGTAAAGAAAGAGCATTACAAAACGTTTTGTTAGTAAAAAAACAAAC] [+] EMBL BX468121 [CAAGAATCGGCACGAGGAGCAAGTAGATAAATGTGCCGCTTCGACAGGGCAATAGATAAAATGCTAGCAAAACAAAACAATCGATCATGTATGTGTATGTATTTTTTTGGATTATAACGATTATGTATCCTCCATTGTCCTGATTGACGTTTGCCAGTTAGATCCTGCTTTCTTGCTATTTAACATGCAGCATAGAGTACAGTACACATGTTTGTTTTGGTAGGGATTAATACATAGCGAATAGCGAGGTAAAGGACATGTTCGCTACTCGTATATTCGCTGCTTGTTGATCGGTTTGCTGACATCGATCTTAACAGTTCGTTGATCGTCATTGTTGAACCCACGCATACGATCATTGAGATGGAGAATGCCCGCTATGTAGCTTGAATCAACTGGAGCTGGTTTTGCTTATTTGTGAAACGAATCTTTGTTGTCATCTGTTCTGTTTTATGCAAATTCAATCATGAGGAAAAGGTTTATGCAAATATAAGACTACGACGAGTTGAGTTCCGTCACAACACTATCGCATCGGCACATACTACCGGTGCATCATTTGAACCCAGGATTGCTGAACCTGTGGAAACAGAACTGGGAAAATACTTTGTGTAGAAAAGGGGAAAATTATTNTAANNTAAANATGGGTAAAGAAAGAGCATTACAAAACGTTTTGTTAGTAAAAAAACAAAC] consensusID : consensus_5658#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTCATTGTATTCTCCTTTATGTTACCTTTTATTTTGCTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTTTAATGTGTAATGCGGTGGGGCAGCCAACAAATCAAATCGTGTCTCAGTCCATCCGTTTCCCTTCGCGATTCGCGTACGGCGGCAGTGTTATGTTGTTCGCTTATGCTTAAATGTAACGATGCAAAATAGCAGCTCAAACATGAAGACTAAATACCACAGTAAGAGAGAGAAAGAGAGAAAGTGAGAGTGAGAGACAGCAAGTGAGAAAAAGAGAACAGGAGAGGAAAAGAAGAAAACAGTTCGATCCGCGCGAACGCATGTTAACAACCTGTTTTTCTCTAAATTGAACTACCGTGTGCTACACCAGAACTTCCAATTGCGTAGAAAAGGTATGTGTTTACTGTAAATTCTGTTTTACCACCACCACTCTTATACAGATCAGAATGCGATTATGCTATTTAGCAAAAAGGGTGTTCAATCCTGGTCCAATTATTGCAAAGTAGATAAATGTGCCGTTTCGACAGGGCAATAGATAAAATGCTAGCAAAACAAAACAATCGCTCATGTATGTGTATGTA] [+] EMBL BM590515 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCATTGTATTCTCCTTTATGTTACCTTTTATTTTGCTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTTTAATGTGTAATGCGGTGGGGCAGCCAACAAATCAAATCGTGTCTCAGTCCATCCGTTTCCCTTCGCGATTCGCGTACGGCGGCAGTGTTATGTTGTTCGCTTATGCTTAAATGTAACGATGCAAAATAGCAGCTCAAACATGAAGACTAAATACCACAGTAAGAGAGAGAAAGAGAGAAAGTGAGAGTGAGAGACAGCAAGTGAGAAAAAGAGAACAGGAGAGGAAAAGAAGAAAACAGTTCGATCCGCGCGAACGCATGTTAACAACCTGTTTTTCTCTAAATTGAACTACCGTGTGCTACACCAGAACTTCCAATTGCGTAGAAAAGGTATGTGTTTACTGTAAATTCTGTTTTACCACCACCACTCTTATACAGATCAGAATGCGATTATGCTATTTAGCAAAAAGGGTGTTCAATCCTGGTCCAATTATTGCAAAGTAGATAAATGTGCCGTTTCGACAGGGCAATAGATAAAATGCTAGCAAAACAAAACAATCGCTCATGTATGTGTATGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5658#0 GACCCATGGCGGGAATGTTACGCGAAGCACTCCTTCGCTTCAAGAGAGATTAACACTGTT 60 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 CCGTTTACGTGAGCGATGAACATTGTGTATAAGCGTGCAATAATTGAAACGGCTCTGTAA 120 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 TGCTGCTCTCTGTTCGACAACGCCTGAGCAAAACGATAGCCAAATTACAACATTTACAAA 180 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 CTATGCGCTCAAATTAGAGTACCGGTTCCGTCAGTCCGTCATGTTTCAACACATATTTTT 240 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 GGACGTTTTTATGGCAGCTATTTTTATTTTGCAATATCATATATTAAACCAATGTCAAGT 300 consensus_5658#2 -----CCGCCCACGCGTCCGCCCACGCGTCCGGTCATTGTATTCTC------CTTTATGT 49 consensus_5658#1 ----------CAAGAATCGGCACGAGGAGCAAGTAGATAAATGTGCCGC---TTCGACAG 47 * * ** * consensus_5658#0 AATCATATGTTGTGTACACCCTTTTGAACATTCGCTGCAATTTCTTGTTGTCTTGGAATG 360 consensus_5658#2 TACCTTTTATTTTG----CTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTTT-AATG 104 consensus_5658#1 GGCAATAGATAAAATGCTAGCAAAACAAAACAATCGATCATGTATGTGTATGTATTTTTT 107 * * * * * * * * * * * consensus_5658#0 TGTTGTACCATCCCTAAAGCCATCCAAACTACTAAACAACATCGTCTTTCAATTACAACT 420 consensus_5658#2 TGTAATGCGGT-----GGGGCAGCCAA-----CAAATCAAATCGTGTCTCAGT--CCATC 152 consensus_5658#1 TGGATTATAACGATTATGTATCCTCCATTGTCCTGATTGA--CGTTTGCCAGTTAGATCC 165 ** * * * * *** * ** * consensus_5658#0 TGGCTTGCTGCCCATCTTGATGCGTTTAACAATGCATGTACAATCGAAACATGTGCGTGC 480 consensus_5658#2 CGTTTCCCTTCGCGATT---CGCGTACGGCGGCAGTGTTATGTTGTTCGCTTATGCTTAA 209 consensus_5658#1 TGCTTTCTTGCTATTTAACATGCAGCATAGAGTACAGTACACATGTTTGTTTTGGTAGGG 225 * * * * ** * * * consensus_5658#0 ACATAACACATTAGAAACACT-GGCCCGCGTACACGGCGGCGGATATGATAAACAGTGTA 539 consensus_5658#2 ATGTAACG-ATGCAAAATAGC-AGCTCAAACATGAAG-ACTAAATACCACAGTAAGAGA- 265 consensus_5658#1 AT-TAATACATAGCGAATAGCGAGGTAAAGGACATGTTCGCTACTCGTATATTCGCTGCT 284 * *** ** ** * * * * * * * consensus_5658#0 CTGCGTAAATGG----CCGGGTGTCTATAAACGCACGTTTAGGATGA-----AAATTTGA 590 consensus_5658#2 --GAGAAAGAGA----GAAAGTGAGAGTGAGAG-ACAGCAAGTGAGA-----AAAAGAGA 313 consensus_5658#1 TGTTGATCGGTTTGCTGACATCGATCTTAACAGTTCGTTGATCGTCATTGTTGAACCCAC 344 * * * * * * * * ** consensus_5658#0 ATTTACTATGCA-AAAGTCATGTCATTTTGGTTTCCATC--GAAGGTTTAGTTTGAAGAC 647 consensus_5658#2 ACAGGAGAGGAA-AAGAAGAAAACAGTTCGATCCGCG-C--GAACGCATG--TTAACAAC 367 consensus_5658#1 GCATACGATCATTGAGATGGAGAATGCCCGCTATGTAGCTTGAATCAACTGGAGCTGGTT 404 * * * * * *** consensus_5658#0 GTAAATTGAGAGACAGAGAACAATAGT--------TTTCAGCAGCG-GATGGCCTAACAG 698 consensus_5658#2 CTGTTTTTCTCTAAATTGAACTACCGT--------GTGCTACACCA-GAACTTCCAATTG 418 consensus_5658#1 TTGCTTATTTGTGAAACGAATCTTTGTTGTCATCTGTTCTGTTTTATGCAAATTCAATCA 464 * * * *** ** * * * ** consensus_5658#0 TGTTGAAGAGAA-TAGTTGGGTT-----CTTAAACAAGTTATATAAAGCTTCCGTTACGG 752 consensus_5658#2 CGTAGAAAAGG--TATGTGTTTA-----CT---GTAAATTCTGTTTTACCACCACCAC-- 466 consensus_5658#1 TGAGGAAAAGGTTTATGCAAATATAAGACTACGACGAGTTGAGTTCCGTCAC-AACACTA 523 * *** ** ** * ** * ** * * ** consensus_5658#0 CCTTTTGCAATGTGAGACGTGCGTG-GTTGCAAAAAAAAGAAGGGGAATTGGCGGCAGCT 811 consensus_5658#2 TCTTATACAGATCAGAATGCGATTATGCTATTTAGCAAAAAGGGTGTTCAATCCTGGTCC 526 consensus_5658#1 TCGCAT-CGGCACATACTACCGGTGCATCATTTGAACCCAGGATTGCTGAACCT--GTGG 580 * * * * * * consensus_5658#0 AATCA--ACGAACTCGAAACATTTTGAGGAAGGTGTAGTAACTAAACGA-ACAGATTAGG 868 consensus_5658#2 AATTATTGCAAAGTAGATAAATGTGCCGTTTCGACAGGGCAATAGATAA-A-ATGCTAGC 584 consensus_5658#1 AAACA----GAACTGGGAAAATACTTTGTGTAGAAAAGGGGAAAATTATTNTAANNTAAA 636 ** * ** * * * ** * * * * * ** consensus_5658#0 TA--GTCTAACCAATTGA-TAGTATGATCTATCTTTACTATTCCGAAAGACTAATCTGAT 925 consensus_5658#2 AA--AACAAAACAATCGC-TCATGT-ATGTGTATGTA----------------------- 617 consensus_5658#1 NATGGGTAAAGAAAGAGCATTACAAAACGTTTTGTTAGTAAAAAAACAAAC--------- 687 * ** ** * * * * * ** consensus_5658#0 GAAAGTTTTTTTTTTGTTCATTATTATTTTGGTATAGATTTAGGACGTGTACCTACCTAC 985 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 TGACGGGGTTTGGATCAGATCTTGCTCAGTTGGTATATTTTCACCATGATTTATGTTTTA 1045 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 TAGTTATTTTTCAAATCAGTAAACCCTCCAATAGCGTATAACCGTAACGTTAGTGATTGC 1105 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 ATATGACGAAGTGCATAAACATACGCCAGTATGTGCGCGCGTATGTAGGATTATCGTGTA 1165 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 TCGAACCTCGATCTTATTGTATATGCACATCCAGATATGATAATATTTGTCATTGTATTC 1225 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 TCCTTTATGTTACCTTTTATTTTGCTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTT 1285 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 TAATGTGTAATGCGGNGGGGCAGCCAACAAATCAAATCGTGTCTCAGTCCATCCGTTTCC 1345 consensus_5658#2 ------------------------------------------------------------ consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 CTTCGCG 1352 consensus_5658#2 ------- consensus_5658#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||