These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 760 fasta sequence [GACCCACGCGTCCGGCAAGCTAAGATGAGGCATTTAGCCAGCGCCAGCTTGTTAGTGATAACGCTGTTGATTAATTTCGTTCATGGAATTCTTATTGTTGGTCCAAAGCATATTCGCGCTGGGCAGAATTACACCGTCATTTTGAGTAGTTTTGAGTCCAATACGAACGAGCGGAACCTTCTCCTTCAACTCGACGGCCTGTCAGCTGGTGGCAAGAAGCTACTGCACCTCGGTCAACCCACCCGCGTGCAGCCGCTCTCAAACAGCGTGATTAGCTTTCCGCTGCCCGAAAGCCTGCCAGCCGGAAGCTATAAATTAACCATCGATGGACAGAACGGATTTAAGTTTCACCGGGAAGCGGATTTGCTGCTCGCTGCGAGTACCACCACCGCCCTGGTGCAGCTCAGCAAACCCATCTACAAGCCCGGTGACGTGCTGCAGTTCCGTGTGATCGTGCTGGGCGGTGATCTAAAGCCACCGGCACCCTCCGTCACCGCCACCGTAATCGTGCACGATCCACAGCGCAATGTCATTCGCCGATGGACCGCGGTCAGCCTGCAGCTCGGTGTGTTTGAGGAGCAGCTCCAAATCGGAACCGTTCCGCTGCTGGGCCGCTACACAATCACCGTCACGGTCACGGGAGCGAATGAAATCGTCTCGAAAACGTTCGACGTTAGGGAGTACGTGCTTCCGGCGTTCGAGGTGGCAGTGCAGGCGCGCGCTGTTCCGCTGGAAAAGCACCAGCGCCTTAATCTGACAC] [+] EMBL BM648345 [GACCCACGCGTCCGGCAAGCTAAGATGAGGCATTTAGCCAGCGCCAGCTTGTTAGTGATAACGCTGTTGATTAATTTCGTTCATGGAATTCTTATTGTTGGTCCAAAGCATATTCGCGCTGGGCAGAATTACACCGTCATTTTGAGTAGTTTTGAGTCCAATACGAACGAGCGGAACCTTCTCCTTCAACTCGACGGCCTGTCAGCTGGTGGCAAGAAGCTACTGCACCTCGGTCAACCCACCCGCGTGCAGCCGCTCTCAAACAGCGTGATTAGCTTTCCGCTGCCCGAAAGCCTGCCAGCCGGAAGCTATAAATTAACCATCGATGGACAGAACGGATTTAAGTTTCACCGGGAAGCGGATTTGCTGCTCGCTGCGAGTACCACCACCGCCCTGGTGCAGCTCAGCAAACCCATCTACAAGCCCGGTGACGTGCTGCAGTTCCGTGTGATCGTGCTGGGCGGTGATCTAAAGCCACCGGCACCCTCCGTCACCGCCACCGTAATCGTGCACGATCCACAGCGCAATGTCATTCGCCGATGGACCGCGGTCAGCCTGCAGCTCGGTGTGTTTGAGGAGCAGCTCCAAATCGGAACCGTTCCGCTGCTGGGCCGCTACACAATCACCGTCACGGT ] [+] EMBL BM591261 [ ccgATTTCGTTCATGGAATTCTTATTGTTGGTCCAAAGCATATTCGCGCTGGGCAGAACTACACCGTCATTTTGAGTAGTTTTGAGTCCAATACGAACGAGCGGAACCTTCTCCTTCAACTCGACGGACTGTCATCTAGTGGCAAGAAGCTACTGCACCTCGGTCAACCCGCCCGCGTGCAGCCGCTCTCAAACAGCGTGATTAGCTTTCCGCTGCCCGAAAGCCTGCCAGCCGGAAGCTATAAATTAACCATCGATGGACAGAACGGATTTAAGTTTCACCGGGAAGCGGATTTGCTGCTCGCTGCGAGTACCACCACCGCCCTGGTGCAGCTCAGCAAACCCATCTACAAGCCCGGTGACGTGCTGCAGTTCCGTGTGATCGTGCTGGGCGGTGATCTAAAGCCACCGGCACCCTCCGTCACCGCCACCGTAATCGTGCACGATCCACAGCGCAATGTCATTCGCCGATGGACCGCGGTCAGCCTGCAGCTCGGTGTGTTTGAGGAGCAGCTCCAAATCGGAACCGTTCCGCTGCTGGGCCGCTACACAATCACCGTCACGGTCACGGGAGCGAATGAAATCGTCTCGAAAACGTTCGACGTTAGGGAGTACGTGCTTCCGGCGTTCGAGGTGGCAGTGCAGGCGCGCGCTGTTCCGCTGGAAAAGCACCAGCGCCTTAATCTGACAC] consensusID : consensus_5665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [CCGGCCAGCTGGAACAGATTTATTTCCGAGAGGGTGCAAGCTAAGATGAGGCATTTAGCCAGCGCCAGCTTGTTAGTGATAACGCTGTTGATTAATTTCGTTCATGGAATTCTTATTGTTGGTCCAAAGCATATTCGCGCTGGACAGAACTACACCGTCATTTTGAGTAGTTTTGAGTCCAATACGAACGAGCGGAACCTTCTCCTTCAACTCGACGGCCTGTCATCTAGTGGCAAGAAGCTACTGCACCTCGGTCAACCCGCCCGCGTGCAGCCGCTCTCAAACAGCGTGATTAGCTTTCCGCTGCCCGATAGCCTGCCAGCCGGAAGCTATAAATTAACCATCGATGGACAGAACGGATTTAAGTTTCACCGGGAAGCGGATTTGCTGCTCGCTGCGAGTACCACCACTGCTCTGGTGCAGCTCAGCAAACCCATCTACAAGCCCGGTGACGTGCTGCAGTTCCGTGTGATCGTGCTGGGCGGTGATCTAAAGCCACCGGCACCCTCCGTCACCGCCACCGTAATCGTGCACGATCCACAGCGCAATGTCATTCGCCGATGGACCGCGATCAGCCTGCAGCTCGGTGTGTTTGAGGAGCAGCTCCAAATCGGAACCGTTCCGCTGCTGGGCCGCTACACAATCACCGTCACGGTCACGGGAGCGAATGAAATCGTCT] [+] EMBL BM609329 [CCGGCCAGCTGGAACAGATTTATTTCCGAGAGGGTGCAAGCTAAGATGAGGCATTTAGCCAGCGCCAGCTTGTTAGTGATAACGCTGTTGATTAATTTCGTTCATGGAATTCTTATTGTTGGTCCAAAGCATATTCGCGCTGGACAGAACTACACCGTCATTTTGAGTAGTTTTGAGTCCAATACGAACGAGCGGAACCTTCTCCTTCAACTCGACGGCCTGTCATCTAGTGGCAAGAAGCTACTGCACCTCGGTCAACCCGCCCGCGTGCAGCCGCTCTCAAACAGCGTGATTAGCTTTCCGCTGCCCGATAGCCTGCCAGCCGGAAGCTATAAATTAACCATCGATGGACAGAACGGATTTAAGTTTCACCGGGAAGCGGATTTGCTGCTCGCTGCGAGTACCACCACTGCTCTGGTGCAGCTCAGCAAACCCATCTACAAGCCCGGTGACGTGCTGCAGTTCCGTGTGATCGTGCTGGGCGGTGATCTAAAGCCACCGGCACCCTCCGTCACCGCCACCGTAATCGTGCACGATCCACAGCGCAATGTCATTCGCCGATGGACCGCGATCAGCCTGCAGCTCGGTGTGTTTGAGGAGCAGCTCCAAATCGGAACCGTTCCGCTGCTGGGCCGCTACACAATCACCGTCACGGTCACGGGAGCGAATGAAATCGTCT] [+] EMBL BM625642 [CCGGCCAGCTGGAACAGGTTTATTTCCGAGAGGGTGCAAGCTAAGATGAGGCATTTAGCCAGCGCCAGCTTGTTAGTGATAACGCTGTTGATTAATTTCGTTCATGGAATTCTTATTGTTGGTCCAAAGCATATTCGCGCTGGACAGAACTACACCGTCATTTTGAGTAGTTTTGAATCCAATACGAACGAGCAGAACCTTCTACTTCAACTCGACGGCCTGTCATCTAGTGGCAAGAAGCTACTGCACCTCGGTCAACCCGCCCGCGTGCAGCCGCTCTCAAACAGCGTGATTAGCTTTCCGCTGCCCGAAAGCCTGCCAGCCGGAAGCTATAAATTAACCATCGATGGACAGAACGGATTTAAGTTTCACCGGGAAGCGGATTTGCTGCTCGCTGCGAGTACCACCACCGCTCTGGTGCAGCTCAGCAAACCCATCTACAAGCCCGGTGACGTGCTGCAGTTCCGTGTGATCGTGCTGGGCGGTGATCTAAAGCCACCGGCACCCTCCGTCACCGCCACCGTAATCGTGCACGATCCACAGCGCAATGTCATTCGCCGATGGACCGCGGTCAGCCTGCAGCTCGGTGTGTTTGAGGAGCAGCTCCAAATCGGAACCGTTCCGCTGCTGGGCCGCTACAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5665#0 --------------------GACCCACGCGTCCG-GCAAGCTAAGATGAGGCATTTAGCC 39 consensus_5665#1 CCGGCCAGCTGGAACAGATTTATTTCCGAGAGGGTGCAAGCTAAGATGAGGCATTTAGCC 60 * ** * * ************************* consensus_5665#0 AGCGCCAGCTTGTTAGTGATAACGCTGTTGATTAATTTCGTTCATGGAATTCTTATTGTT 99 consensus_5665#1 AGCGCCAGCTTGTTAGTGATAACGCTGTTGATTAATTTCGTTCATGGAATTCTTATTGTT 120 ************************************************************ consensus_5665#0 GGTCCAAAGCATATTCGCGCTGGGCAGAATTACACCGTCATTTTGAGTAGTTTTGAGTCC 159 consensus_5665#1 GGTCCAAAGCATATTCGCGCTGGACAGAACTACACCGTCATTTTGAGTAGTTTTGAGTCC 180 *********************** ***** ****************************** consensus_5665#0 AATACGAACGAGCGGAACCTTCTCCTTCAACTCGACGGCCTGTCAGCTGGTGGCAAGAAG 219 consensus_5665#1 AATACGAACGAGCGGAACCTTCTCCTTCAACTCGACGGCCTGTCATCTAGTGGCAAGAAG 240 ********************************************* ** *********** consensus_5665#0 CTACTGCACCTCGGTCAACCCACCCGCGTGCAGCCGCTCTCAAACAGCGTGATTAGCTTT 279 consensus_5665#1 CTACTGCACCTCGGTCAACCCGCCCGCGTGCAGCCGCTCTCAAACAGCGTGATTAGCTTT 300 ********************* ************************************** consensus_5665#0 CCGCTGCCCGAAAGCCTGCCAGCCGGAAGCTATAAATTAACCATCGATGGACAGAACGGA 339 consensus_5665#1 CCGCTGCCCGATAGCCTGCCAGCCGGAAGCTATAAATTAACCATCGATGGACAGAACGGA 360 *********** ************************************************ consensus_5665#0 TTTAAGTTTCACCGGGAAGCGGATTTGCTGCTCGCTGCGAGTACCACCACCGCCCTGGTG 399 consensus_5665#1 TTTAAGTTTCACCGGGAAGCGGATTTGCTGCTCGCTGCGAGTACCACCACTGCTCTGGTG 420 ************************************************** ** ****** consensus_5665#0 CAGCTCAGCAAACCCATCTACAAGCCCGGTGACGTGCTGCAGTTCCGTGTGATCGTGCTG 459 consensus_5665#1 CAGCTCAGCAAACCCATCTACAAGCCCGGTGACGTGCTGCAGTTCCGTGTGATCGTGCTG 480 ************************************************************ consensus_5665#0 GGCGGTGATCTAAAGCCACCGGCACCCTCCGTCACCGCCACCGTAATCGTGCACGATCCA 519 consensus_5665#1 GGCGGTGATCTAAAGCCACCGGCACCCTCCGTCACCGCCACCGTAATCGTGCACGATCCA 540 ************************************************************ consensus_5665#0 CAGCGCAATGTCATTCGCCGATGGACCGCGGTCAGCCTGCAGCTCGGTGTGTTTGAGGAG 579 consensus_5665#1 CAGCGCAATGTCATTCGCCGATGGACCGCGATCAGCCTGCAGCTCGGTGTGTTTGAGGAG 600 ****************************** ***************************** consensus_5665#0 CAGCTCCAAATCGGAACCGTTCCGCTGCTGGGCCGCTACACAATCACCGTCACGGTCACG 639 consensus_5665#1 CAGCTCCAAATCGGAACCGTTCCGCTGCTGGGCCGCTACACAATCACCGTCACGGTCACG 660 ************************************************************ consensus_5665#0 GGAGCGAATGAAATCGTCTCGAAAACGTTCGACGTTAGGGAGTACGTGCTTCCGGCGTTC 699 consensus_5665#1 GGAGCGAATGAAATCGTCT----------------------------------------- 679 ******************* consensus_5665#0 GAGGTGGCAGTGCAGGCGCGCGCTGTTCCGCTGGAAAAGCACCAGCGCCTTAATCTGACA 759 consensus_5665#1 ------------------------------------------------------------ consensus_5665#0 C 760 consensus_5665#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||