These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 730 fasta sequence [GTGTTACACCATGTGCTATATATATATGTATATGTATATTCAATACCGTTCACTTAGTACGTTCCGGGTTTAGTGCTGTGTGTATGCTATGTATCGGGATTTTCCGTTTATACATACAGACACGCATACATACATACCTACGTACATAAGCCGCATACACGCATGTTACTACTTTACCTTAGCGTTTATGATTATTCTTAATTTTAAAAACAGTTCAGTTAAAAAAAAAGTCAGAAGAGTCAGAACTCGGAACGAACGGAAAATGGAGTAACGGGCTCTGCTCGCGCCGTCATACTTTTTGTACAGAAAAAAACCCCGCAAAATGAATGTTGTGCCCCCCCCCCCCCCCTCCCTGTAAACTGTAAGGAGAGTGACTAAAAAAGAATAGAAATTGTATCCTTTTTGGTTTTGTGTGTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCGGCGGCGGTGCGGTGTACGGCGTAGACAAGCAGGAGGGAGAGAGGGACATAGGCGCGGTAAGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGTATAAGAAGATGTGGGCGAGGAGGACACAGAGTAGTGTCGGAAAACGATGGAGAAGGATTGCAACAGTCAGGAGGCAAGAAAGTTGATGCAACACTACTCACGGTTTTTTTTTTTTGGGCGATGTGGGAGAAAATGGAAAAATTTTGTCG] [+] EMBL BX608049 [GTGTTACACCATGTGCTATATATATATGTATATGTATATTCAATACCGTTCACTTAGTACGTTCCGGGTTTAGTGCTGTGTGTATGCTATGTATCGGGATTTTCCGTTTATACATACAGACACGCATACATACATACCTACGTACATAAGCCGCATACACGCATGTTACTACTTTACCTTAGCGTTTATGATTATTCTTAATTTTAAAAACAGTTCAGTTAAAAAAAAAGTCAGAAGAGTCAGAACTCGGAACGAACGGAAAATGGAGTAACGGGCTCTGCTCGCGCCGTCATACTTTTTGTACAGAAAAAAACCCCGCAAAATGAATGTTGTGCCCCCCCCCCCCCCCTCCCTGTAAACTGTAAGGAGAGTGACTAAAAAAGAATAGAAATTGTATCCTTTTTGGTTTTGTGTGTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCGGCGGCGGTGCGGTGTACGGCGTAGACAAGCAGGAGGGAGAGAGGGACATAGGCGCGGTAAGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGG ] [-] EMBL CNS09ID9 [ AAAAGTAGGCTTAGACAACACATTAATATAATTACCGCGGTATAAGAAGATGTGGGCGAGGAGGACACAGAGTAGTGTCGGAAAACGATGGAGAAGGATTGCAACAGTCAGGAGGCAAGAAAGTTGATGCAACACTACTCACGGTTTTTTTTTTTTGGGCGATGTGGGAGAAAATGGAAAAATTTTGTCG] consensusID : consensus_5671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [CCGTACTTTTTGTACAGTAAAACAACCCCCCGCAAATTGAATGTTGTGCCCCCTCCCTGTAAACTGTAAGGGGAGTGACTAAAAAAAAGGATAGAAATTGTATCCTTTTTGGTTTTGTGTGTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCGGCGGCGGTGCGGTGTACGGCGTTAGACAAGCAGGAGGGAGAGAGGGACAGAGGCGCGGTAAGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGAATAAGAAGATGGGGGGGAGGGAAGCAAGACACAGAGAGTAGTGTCGGAAAACGATGGAGAACGATTGCAACAGTCAGGCGGCAGGAAAGTTGATGCAACACTACTCACGGTCTTTTTTTTGGGGGGGGATGTGGGAGAATATGGAACAATTTTGTCGTCGAAATTTGA] [+] EMBL BM592104 [CCGTACTTTTTGTACAGTAAAACAACCCCCCGCAAATTGAATGTTGTGCCCCCTCCCTGTAAACTGTAAGGGGAGTGACTAAAAAAAAGGATAGAAATTGTATCCTTTTTGGTTTTGTGTGTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCGGCGGCGGTGCGGTGTACGGCGTTAGACAAGCAGGAGGGAGAGAGGGACAGAGGCGCGGTAAGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGAATAAGAAGATGGGGGGGAGGGAAGCAAGACACAGAGAGTAGTGTCGGAAAACGATGGAGAACGATTGCAACAGTCAGGCGGCAGGAAAGTTGATGCAACACTACTCACGGTCTTTTTTTTGGGGGGGGATGTGGGAGAATATGGAACAATTTTGTCGTCGAAATTTGA] consensusID : consensus_5671#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 99 fasta sequence [CTGAATGCAAAAAACAGTCCAGTAAAAAAAAAAGTCAGAAGAGTCAGAACTCGGAACGAACGGAAAATGGAGTAACGGGCTCTGCTCGCGCGTCATACT] [+] EMBL BX608402 [CTGAATGCAAAAAACAGTCCAGTAAAAAAAAAAGTCAGAAGAGTCAGAACTCGGAACGAACGGAAAATGGAGTAACGGGCTCTGCTCGCGCGTCATACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5671#0 ------------------------------------------------------------ consensus_5671#2 ------------------------------------------------------------ consensus_5671#1 CCGTACTTTTTGTACAGTAAAACAACCCCCCGCAAATTGAATGTTGTGCCCCCTCCCTGT 60 consensus_5671#0 ------GTGTTACACCATGTGCTATATATATATGTATATGTATATTCAATACCGTTCACT 54 consensus_5671#2 ------------------------------------------------------------ consensus_5671#1 AAACTGTAAGGGGAGTGACTAAAAAAAAGGATAGAAATTGTATCCTTTTTGGTTTTGTGT 120 consensus_5671#0 TAGTACGTTCCGGGTTTAGTGCTGTGTGTATGCTATGTATCGGGATTTTCCGTTTATACA 114 consensus_5671#2 ------------------------------------------------------------ consensus_5671#1 GTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCG 180 consensus_5671#0 TACAGACACGCATACATACATACCTACGTACATAAGCCGCATACACGCATGTTACTACTT 174 consensus_5671#2 ------------------------------------------------------------ consensus_5671#1 GCGGCGGTGCGGTGTACGGCGTTAGACAAGCAGGAGGGAGAGAGGGACAGAGGCGCGGTA 240 consensus_5671#0 TACCTTAGCGTTTATGATTATTCTTAATTTTAAAAACAGTTCAGTTAAAAAAAAAGTCAG 234 consensus_5671#2 ----------------------CTGAATGCAAAAAACAGTCCAGTAAAAAAAAAAGTCAG 38 consensus_5671#1 AGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGAATAAGAAGATGG 300 * * ** * * * * * ** ** *** * consensus_5671#0 AAGAGTCAGAACTCGGAACGAACGGAAAATG-----GAGTAACGGGCTCTGCTCGCG-CC 288 consensus_5671#2 AAGAGTCAGAACTCGGAACGAACGGAAAATG-----GAGTAACGGGCTCTGCTCGCG-C- 91 consensus_5671#1 GGGGGAGGGAAGCAAGACACAGAGAGTAGTGTCGGAAAACGATGGAGAACGATTGCAACA 360 * * *** ** * * * ** * * ** * * ** * consensus_5671#0 GTCATACTTTTTGTACAGAAAAAAACCCCGCAAAATGAATGTTGTGCCCCCCCCCCCCCC 348 consensus_5671#2 GTCATACT---------------------------------------------------- 99 consensus_5671#1 GTCAGGCGGCAGGAAAGTTGATGCAACACTACTCACGGTCTTTTTTTTGGGGGGGGATGT 420 **** * consensus_5671#0 CTCCCTGTAAACTGTAAGGAGAGTGACTAAAAAAGAATAGAAATTGTATCCTTTTTGGTT 408 consensus_5671#2 ------------------------------------------------------------ consensus_5671#1 GGGAGAATATGGAACAATTTTGTCGTCGAAATTTGA------------------------ 456 consensus_5671#0 TTGTGTGTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAA 468 consensus_5671#2 ------------------------------------------------------------ consensus_5671#1 ------------------------------------------------------------ consensus_5671#0 GAGGCGGCGGCGGTGCGGTGTACGGCGTAGACAAGCAGGAGGGAGAGAGGGACATAGGCG 528 consensus_5671#2 ------------------------------------------------------------ consensus_5671#1 ------------------------------------------------------------ consensus_5671#0 CGGTAAGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGTATAAGAA 588 consensus_5671#2 ------------------------------------------------------------ consensus_5671#1 ------------------------------------------------------------ consensus_5671#0 GATGTGGGCGAGGAGGACACAGAGTAGTGTCGGAAAACGATGGAGAAGGATTGCAACAGT 648 consensus_5671#2 ------------------------------------------------------------ consensus_5671#1 ------------------------------------------------------------ consensus_5671#0 CAGGAGGCAAGAAAGTTGATGCAACACTACTCACGGTTTTTTTTTTTTGGGCGATGTGGG 708 consensus_5671#2 ------------------------------------------------------------ consensus_5671#1 ------------------------------------------------------------ consensus_5671#0 AGAAAATGGAAAAATTTTGTCG 730 consensus_5671#2 ---------------------- consensus_5671#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||