These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 678 fasta sequence [CCGCCCACGCGTCCGGTCACCGGAGAAAGACTTGCAAATTCTTGGTTGCTCCAACCGGCAGGCGGTTTGGGTTTGGCTCCACCAGTAGCAGTGGAAAGTGTTTGTGCTCGTTTTGGTTTGAATGATCGTACCGCGTGTGGTGTGCTGCTGGTACCGAAGGCATCGCACTGTTCCGACCCGCTAATCGACTATCCCGGTGAGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACA---AGAACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATCCTGAAGAACATCATCACGGTGTCGGTGGCGTTTATGGTGCAGTTTACCGCGTTCCAGGGCACGGCAAATCTGCAATCCTCGATCAATGCAAAGGACGGGCTCGGCACGGTGTCGCTCAGCGTCGTCTACGCGGCGCTGGTAGTGTCCTGCATCTTTCTGCCCACGCTCGTCATCCGCAAGCTCACCGTGAAGTGGACGCTGTGCGTGAGCATGCTCTGCTACGCCCCGTACATT-GCCTCGCAGTTCTATCCACGGTTCTACACCCTGCTGCCCGCGGGCGTGCTACTCGGCCTAGGCGCTGCCCCGATGTGGG] [+] EMBL BM593639 [CCGCCCACGCGTCCGGTCACCGGAGAAAGACTTGCAAATTCTTGGTTGCTCCAACCGGCAGGCGGTTTGGGTTTGGCTCCACCAGTAGCAGTGGAAAGTGTTTGTGCTCGTTTTGGTTTGAATGATCGTACCGCGTGTGGTGTGCTGCTGGTACCGAAGGCATCGCACTGTTCCGACCCGCTAATCGACTATCCCGGTGAGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGCAGAACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATCCTGAAGAACATCATCACGGTGTCGGTGGCGTTTATGGTGCAGTTTACCGCGTTCCAGGGCACGGCAAATCTGCAATCCTCGATCAATGCAAAGGACGGGCTCGGCACGGTGTCGCTCAGCGTCGTCTACGCGGCGCTGGTAGTGTCCTGCATCTTTCTGCCCACGCTCGTCATCCGCAAGCTCACCGTGAAGTGGACGCTGTGCGTGAGCATGCTCTGCTACGCCCCGTACATT GCCTCGCAGTTCTATCCACGGTTCTACACCCTGCTGCCCGCGGGCGTGCTACTCGGCCTAGGCGCTGCCCCGATGTGGG] [+] EMBL BM601689 [ ccgcgcgaaGTCACCGGAGAAAGACTTGCAAATTCTTGGTTGCTCCAACCGGCAGGCGGTTTGGGTTTGGCTCCACCATTAGCAGCGGAAAGTGTTTGTGCTCGTTTTGGTTTGAATGATCGTACCGCGGGTGGTGTGCTGCTGGTACCGAAGGTATCGCACTGTTCCTACCCGCTAATCGACTATCCCGGCGAGACCGGTACACTCATCCTAACGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACA AGAACGGCGGCGATACG ] [+] EMBL BM600974 [ ccgGCAAATTCTTGGTTGCTCCAACCGGCAGGCGGTTTGGGTTTGGCTCCACCAGTAGCAGTGGAAAGTGTTTGTGCTCGTTTTGGTTTGAATGATCGTACCGCGTGTGGTGTGCTGCTGGTACCGAAGGCATCGCACTGTTCCGACCCGCTAATCGACTATCCCGGTGAGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACA AGAACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATCCTGAAGAACATCATCACGGTGTCGGTGGCGTTTATGGTGCAGTTTACCGCGTTCCAGGGCACGGCAAATCTGCAATCCTCGATCAATGCAAAGGACGGGCTCGGCACGGTGTCGCTCAGCGTCGTCTACGCGGCGCTGGTAGTGTCCTGCATCTTTCTGCCCACGCTCGTCATCCGCAAGCTCACCGTGAAGTGGACGCTGTGCGTGAGCATGCTCTGCTACGCCCCGTAATTTGGCCTCGCAGTTCTAT ] consensusID : consensus_5684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [CCGCCCACGCGTCCGGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGAACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATCCTGAAGAAACAATCCAATCCACCGGGGTGGTTCGGGTTGGGGCGGTTTTTATGGTGCAGTTTACCGCGTT] [+] EMBL BM601357 [CCGCCCACGCGTCCGGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGAACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATCCTGAAGAAACAATCCAATCCACCGGGGTGGTTCGGGTTGGGGCGGTTTTTATGGTGCAGTTTACCGCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5684#0 CCGCCCACGCGTCCGGTCACCGGAGAAAGACTTGCAAATTCTTGGTTGCTCCAACCGGCA 60 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GGCGGTTTGGGTTTGGCTCCACCAGTAGCAGTGGAAAGTGTTTGTGCTCGTTTTGGTTTG 120 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 AATGATCGTACCGCGTGTGGTGTGCTGCTGGTACCGAAGGCATCGCACTGTTCCGACCCG 180 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 CTAATCGACTATCCCGGTGAGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGC 240 consensus_5684#1 ----CCGCCCA-CGCGTCCGGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGC 55 ** * * * ** **************************************** consensus_5684#0 AAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGA 300 consensus_5684#1 AAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGA 115 ************************************************************ consensus_5684#0 ACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGC 360 consensus_5684#1 ACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGC 175 ************************************************************ consensus_5684#0 GCATCCTGAAGAACATCATCACGGTGTCGGTGGCGTTTATGGTGCAGTTTACCGCGTTCC 420 consensus_5684#1 GCATCCTGAAGAAACAATCCAATCCACCGGGGTGGTTCGGGTTGGGG-----CGGTTTTT 230 ************* ** *** * *** * ** * ** ** consensus_5684#0 AGGGCACGGCAAATCTGCAATCCTCGATCAATGCAAAGGACGGGCTCGGCACGGTGTCGC 480 consensus_5684#1 ATGGTGCAGTTTACC-GCGTT--------------------------------------- 250 * ** * * * * ** * consensus_5684#0 TCAGCGTCGTCTACGCGGCGCTGGTAGTGTCCTGCATCTTTCTGCCCACGCTCGTCATCC 540 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GCAAGCTCACCGTGAAGTGGACGCTGTGCGTGAGCATGCTCTGCTACGCCCCGTACATTG 600 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 CCTCGCAGTTCTATCCACGGTTCTACACCCTGCTGCCCGCGGGCGTGCTACTCGGCCTAG 660 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GCGCTGCCCCGATGTGGG 678 consensus_5684#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||