cluster # 5684

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Anopheles gambiae
cluster # 5684 cluster # 5684 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5684#0 length = 678 sequences # 3

consensus_5684#1 length = 250 sequences # 1

consensusID : consensus_5684#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 678
fasta sequence

                              [CCGCCCACGCGTCCGGTCACCGGAGAAAGACTTGCAAATTCTTGGTTGCTCCAACCGGCAGGCGGTTTGGGTTTGGCTCCACCAGTAGCAGTGGAAAGTGTTTGTGCTCGTTTTGGTTTGAATGATCGTACCGCGTGTGGTGTGCTGCTGGTACCGAAGGCATCGCACTGTTCCGACCCGCTAATCGACTATCCCGGTGAGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACA---AGAACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATCCTGAAGAACATCATCACGGTGTCGGTGGCGTTTATGGTGCAGTTTACCGCGTTCCAGGGCACGGCAAATCTGCAATCCTCGATCAATGCAAAGGACGGGCTCGGCACGGTGTCGCTCAGCGTCGTCTACGCGGCGCTGGTAGTGTCCTGCATCTTTCTGCCCACGCTCGTCATCCGCAAGCTCACCGTGAAGTGGACGCTGTGCGTGAGCATGCTCTGCTACGCCCCGTACATT-GCCTCGCAGTTCTATCCACGGTTCTACACCCTGCTGCCCGCGGGCGTGCTACTCGGCCTAGGCGCTGCCCCGATGTGGG]

[+] EMBL BM593639             [CCGCCCACGCGTCCGGTCACCGGAGAAAGACTTGCAAATTCTTGGTTGCTCCAACCGGCAGGCGGTTTGGGTTTGGCTCCACCAGTAGCAGTGGAAAGTGTTTGTGCTCGTTTTGGTTTGAATGATCGTACCGCGTGTGGTGTGCTGCTGGTACCGAAGGCATCGCACTGTTCCGACCCGCTAATCGACTATCCCGGTGAGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGCAGAACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATCCTGAAGAACATCATCACGGTGTCGGTGGCGTTTATGGTGCAGTTTACCGCGTTCCAGGGCACGGCAAATCTGCAATCCTCGATCAATGCAAAGGACGGGCTCGGCACGGTGTCGCTCAGCGTCGTCTACGCGGCGCTGGTAGTGTCCTGCATCTTTCTGCCCACGCTCGTCATCCGCAAGCTCACCGTGAAGTGGACGCTGTGCGTGAGCATGCTCTGCTACGCCCCGTACATT GCCTCGCAGTTCTATCCACGGTTCTACACCCTGCTGCCCGCGGGCGTGCTACTCGGCCTAGGCGCTGCCCCGATGTGGG]
[+] EMBL BM601689             [      ccgcgcgaaGTCACCGGAGAAAGACTTGCAAATTCTTGGTTGCTCCAACCGGCAGGCGGTTTGGGTTTGGCTCCACCATTAGCAGCGGAAAGTGTTTGTGCTCGTTTTGGTTTGAATGATCGTACCGCGGGTGGTGTGCTGCTGGTACCGAAGGTATCGCACTGTTCCTACCCGCTAATCGACTATCCCGGCGAGACCGGTACACTCATCCTAACGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACA   AGAACGGCGGCGATACG                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM600974             [                              ccgGCAAATTCTTGGTTGCTCCAACCGGCAGGCGGTTTGGGTTTGGCTCCACCAGTAGCAGTGGAAAGTGTTTGTGCTCGTTTTGGTTTGAATGATCGTACCGCGTGTGGTGTGCTGCTGGTACCGAAGGCATCGCACTGTTCCGACCCGCTAATCGACTATCCCGGTGAGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACA   AGAACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATCCTGAAGAACATCATCACGGTGTCGGTGGCGTTTATGGTGCAGTTTACCGCGTTCCAGGGCACGGCAAATCTGCAATCCTCGATCAATGCAAAGGACGGGCTCGGCACGGTGTCGCTCAGCGTCGTCTACGCGGCGCTGGTAGTGTCCTGCATCTTTCTGCCCACGCTCGTCATCCGCAAGCTCACCGTGAAGTGGACGCTGTGCGTGAGCATGCTCTGCTACGCCCCGTAATTTGGCCTCGCAGTTCTAT                                                                ]




>consensus_5684#0
CCGCCCACGCGTCCGGTCACCGGAGAAAGACTTGCAAATTCTTGGTTGCTCCAACCGGCA
GGCGGTTTGGGTTTGGCTCCACCAGTAGCAGTGGAAAGTGTTTGTGCTCGTTTTGGTTTG
AATGATCGTACCGCGTGTGGTGTGCTGCTGGTACCGAAGGCATCGCACTGTTCCGACCCG
CTAATCGACTATCCCGGTGAGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGC
AAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGA
ACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGC
GCATCCTGAAGAACATCATCACGGTGTCGGTGGCGTTTATGGTGCAGTTTACCGCGTTCC
AGGGCACGGCAAATCTGCAATCCTCGATCAATGCAAAGGACGGGCTCGGCACGGTGTCGC
TCAGCGTCGTCTACGCGGCGCTGGTAGTGTCCTGCATCTTTCTGCCCACGCTCGTCATCC
GCAAGCTCACCGTGAAGTGGACGCTGTGCGTGAGCATGCTCTGCTACGCCCCGTACATTG
CCTCGCAGTTCTATCCACGGTTCTACACCCTGCTGCCCGCGGGCGTGCTACTCGGCCTAG
GCGCTGCCCCGATGTGGG

consensusID : consensus_5684#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [CCGCCCACGCGTCCGGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGAACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATCCTGAAGAAACAATCCAATCCACCGGGGTGGTTCGGGTTGGGGCGGTTTTTATGGTGCAGTTTACCGCGTT]

[+] EMBL BM601357             [CCGCCCACGCGTCCGGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGAACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATCCTGAAGAAACAATCCAATCCACCGGGGTGGTTCGGGTTGGGGCGGTTTTTATGGTGCAGTTTACCGCGTT]




>consensus_5684#1
CCGCCCACGCGTCCGGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGCAAGCT
GCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGAACGGC
GGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGCGCATC
CTGAAGAAACAATCCAATCCACCGGGGTGGTTCGGGTTGGGGCGGTTTTTATGGTGCAGT
TTACCGCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5684#0      CCGCCCACGCGTCCGGTCACCGGAGAAAGACTTGCAAATTCTTGGTTGCTCCAACCGGCA 60
consensus_5684#1      ------------------------------------------------------------
                                                                                  

consensus_5684#0      GGCGGTTTGGGTTTGGCTCCACCAGTAGCAGTGGAAAGTGTTTGTGCTCGTTTTGGTTTG 120
consensus_5684#1      ------------------------------------------------------------
                                                                                  

consensus_5684#0      AATGATCGTACCGCGTGTGGTGTGCTGCTGGTACCGAAGGCATCGCACTGTTCCGACCCG 180
consensus_5684#1      ------------------------------------------------------------
                                                                                  

consensus_5684#0      CTAATCGACTATCCCGGTGAGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGC 240
consensus_5684#1      ----CCGCCCA-CGCGTCCGGACCGGTACACTCGTCCTAGCGCGCGGCACGTCTACAGGC 55
                           ** * * * **    ****************************************

consensus_5684#0      AAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGA 300
consensus_5684#1      AAGCTGCTTTCAAAGGAAACGCGCCAACCATGCACGGTGGAGGAGTAGACACCGACAAGA 115
                      ************************************************************

consensus_5684#0      ACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGC 360
consensus_5684#1      ACGGCGGCGATACGGCCTCGCTGCGAGAGAAGGTACAGCTGCGAAGGGGAGAAAAATGGC 175
                      ************************************************************

consensus_5684#0      GCATCCTGAAGAACATCATCACGGTGTCGGTGGCGTTTATGGTGCAGTTTACCGCGTTCC 420
consensus_5684#1      GCATCCTGAAGAAACAATCCAATCCACCGGGGTGGTTCGGGTTGGGG-----CGGTTTTT 230
                      *************      **      *** *  ***   * **  *     **  **  

consensus_5684#0      AGGGCACGGCAAATCTGCAATCCTCGATCAATGCAAAGGACGGGCTCGGCACGGTGTCGC 480
consensus_5684#1      ATGGTGCAGTTTACC-GCGTT--------------------------------------- 250
                      * **  * *   * * **  *                                       

consensus_5684#0      TCAGCGTCGTCTACGCGGCGCTGGTAGTGTCCTGCATCTTTCTGCCCACGCTCGTCATCC 540
consensus_5684#1      ------------------------------------------------------------
                                                                                  

consensus_5684#0      GCAAGCTCACCGTGAAGTGGACGCTGTGCGTGAGCATGCTCTGCTACGCCCCGTACATTG 600
consensus_5684#1      ------------------------------------------------------------
                                                                                  

consensus_5684#0      CCTCGCAGTTCTATCCACGGTTCTACACCCTGCTGCCCGCGGGCGTGCTACTCGGCCTAG 660
consensus_5684#1      ------------------------------------------------------------
                                                                                  

consensus_5684#0      GCGCTGCCCCGATGTGGG 678
consensus_5684#1      ------------------