These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5687#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 708 fasta sequence [CCGCTGTATTTCCTTCGCATTGTACCGGGGAGTTCATGCCTTTCTATGTTTCTTGGATAAAGTACAGAAATTTACATTTAGTTTTCTTTTGCCCGCGTTGTACTGTTTCTATCATGTCCCGTGTGACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCTAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGAATCGCAAATTTCTAGCCCAGAGCTCGGACGATGATGATGATGATGAGGACGATGAGGACGATGACGACGATGACGACGATGAAGAGGAAAATGAAGATGACGACCAAGAGGAGGTGGAAAAA-CCGGAGGAAGGTGAAAAT-GCCGCGTCAAGGGTAGCCAATAACGGACAG-AATTATCCTCGATGGACCGATGAGCCGAAAACAATCGATT] [+] EMBL BM615802 [CCGCTGTATTTCCTTCGCATTGTACCGGGGAGTTCATGCCTTTCTATGTTTCTTGGATAAAGTACAGAAATTTACATTTAGTTTCCTTTTGCCCGCGTTCTACTGTTTCTATCATGTCCCGTGTTACCAAGATTAAACATGTTCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCCAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGAATCGCAAATTTCTAGCCCAGAGCTCGGACGATGATGATGATGAT GATGAGGACGATGAGGATGATGACGACGATGAAGAGGAAAATGAAGAGGACGACCAAGAGGAGGTGGAAAAA CCGGAGGAAGGTGAAAATGGCCGCGTCAAGGGCAACCAATAACGGACAG AATTATCCTCGATGG ] [+] EMBL BM635112 [ ccgCCGGGGAGTTCAAGTCTTTCTATGTTTCTTGGATAAAGTACAGAAATTTACATTTAGTTTTCTTTTGCCCGCGTTGTACTGTTTCTATCATGTCCCGTGTGACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCTAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGAATCGCAAATTTCTAGCCCAGAGCTCGGACGATGATGATGATGATGAGGACGATGAGGACGATGACGACGATGACGACGATGAAGAGGAAAATGAAGATGACGACCAAGAGGAGGTGGAAAAACCCGGAGGAAAGTGAAAAT GCCGCGTCAAGGGTAGCCAATAACGGACAG A ] [+] EMBL BM594550 [ ccgCTTGGATAAAGTACAGAAATTTACATTTAGTTTTCTTTTGCCCGCGTTGTACTGTTTCTATCATGTCCCGTGTGACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCTAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGAATCGCAAATTTCTAGCCCAGAGCTCGGACGATGATGATGATGATGAGGACGATGAGGACGATGACGACGATGACGACGATGAAGAGGAAAATGAAGATGACGACCAAGAGGAGGTGGAAAAA CCGGAGGAAGGTGAAAAT GCCGCGTCAAGGGTAGCCAATAACGGACAGAAATTGTCCTCGATGGACCGATGAGCCGAAAACAATCGATT] consensusID : consensus_5687#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [GGCAAGATCCCCACGATGTGAGGAGTCAAGCCTTTCTATGCTTTCTTGGATAAAGTACAGAAATTTACATTTAGTTTCCTTTTGCCCGCGTTCTACTGTTTCTATCATGTCCCGTGTTACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCCAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGATTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTNGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGGAATCGCAANATTTCTAGCCCAGAGCTCGGACGATGATGATGCATGATGATGAGGGACGGATGNAGGCATGGATGACCGGACGATGGACAGAGGACAAATGACGAGGGACGACCCAGGAGGAGGTGGGAAAAACCGGAGGAAGGTGACANAT] [+] EMBL BX468195 [GGCAAGATCCCCACGATGTGAGGAGTCAAGCCTTTCTATGCTTTCTTGGATAAAGTACAGAAATTTACATTTAGTTTCCTTTTGCCCGCGTTCTACTGTTTCTATCATGTCCCGTGTTACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCCAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGATTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTNGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGGAATCGCAANATTTCTAGCCCAGAGCTCGGACGATGATGATGCATGATGATGAGGGACGGATGNAGGCATGGATGACCGGACGATGGACAGAGGACAAATGACGAGGGACGACCCAGGAGGAGGTGGGAAAAACCGGAGGAAGGTGACANAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5687#0 CCGCTGTATTTCCTTCGCATTGTACCGGGGAGTTCATGCCTTTCTATG-TTTCTTGGATA 59 consensus_5687#1 ----GGCAAGATCCCCACGATGT---GAGGAGT-CAAGCCTTTCTATGCTTTCTTGGATA 52 * * * * * *** * ***** ** *********** *********** consensus_5687#0 AAGTACAGAAATTTACATTTAGTTTTCTTTTGCCCGCGTTGTACTGTTTCTATCATGTCC 119 consensus_5687#1 AAGTACAGAAATTTACATTTAGTTTCCTTTTGCCCGCGTTCTACTGTTTCTATCATGTCC 112 ************************* ************** ******************* consensus_5687#0 CGTGTGACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCT 179 consensus_5687#1 CGTGTTACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCC 172 ***** ***************************************************** consensus_5687#0 AAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTG 239 consensus_5687#1 AAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTG 232 ************************************************************ consensus_5687#0 GAAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAA 299 consensus_5687#1 GAAACGGCACAGGACGGCGAGGAGCGATTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAA 292 ************************** ********************************* consensus_5687#0 AATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAG 359 consensus_5687#1 AATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAG 352 ************************************************************ consensus_5687#0 GTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAA 419 consensus_5687#1 GTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAA 412 ************************************************************ consensus_5687#0 GGCGTTTGG-CCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGA 478 consensus_5687#1 GGCGTTTNGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGA 472 ******* * ************************************************** consensus_5687#0 TGGGCTATTCCGAAATACG-AATCGCAAA-TTTCTAGCCCAGAGCTCGGACGATGATGAT 536 consensus_5687#1 TGGGCTATTCCGAAATACGGAATCGCAANATTTCTAGCCCAGAGCTCGGACGATGATGAT 532 ******************* ******** ****************************** consensus_5687#0 G-ATGATGAGGACGATGAGGACGATGACGACGATGAC--GACGATGAA--GAGGA-AAAT 590 consensus_5687#1 GCATGATGATGAGGG-ACGGATGNAGGCATGGATGACCGGACGATGGACAGAGGACAAAT 591 * ******* ** * *** * * * ****** ******* * ***** **** consensus_5687#0 GAAGATG-ACGACC-AAGAGGAGGTGG-AAAAACCGGAGGAAGGTGA-AAATGCCGCGTC 646 consensus_5687#1 GACGAGGGACGACCCAGGAGGAGGTGGGAAAAACCGGAGGAAGGTGACANAT-------- 643 ** ** * ****** * ********** ******************* * ** consensus_5687#0 AAGGGTAGCCAATAACGGACAGAATTATCCTCGATGGACCGATGAGCCGAAAACAATCGA 706 consensus_5687#1 ------------------------------------------------------------ consensus_5687#0 TT 708 consensus_5687#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||