These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 972 fasta sequence [CCGCGCGTTTAAATAGCAATAGGTTTCATCAGAATCTGTGTTGTGTTCTCTTGTGCAAAGCATTAGGGGTGGGTAAGCCAAGGGTGTGTGCATGTGTGTTGGAAGGGGTTTTTAGAGGGACCGGTAGACCGATCGCGTGTGCGAATGATGAGGTTTTGAAACAGAGGTGAGCGCGTGTTCGTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCAGGCCACCGAAAACAACCGCTGCTGCAAAACGCTTTAGGATATTATAGCAACGAATAAGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAATGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGC-GTATACGTGTGTGTGTGTGTGTGCTAACGTGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGAACTGAACACAAATTACATTATTTGAGAAGTGCGATTCGCCCGGTTATCTTTGACCCCCCCCCCCCCACACACACACACTCATACACACACACACATATATAATGCTTTTTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTTTGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAACCTCCCGGAGATGGCATGGTAAGCAATAAACCGCAAGTGGACGGGCAGCGGTGGGTAGTGCGGCCGTAGTAGGACAGAGAAGGATACGAATTTTAAACAACAGGACACAAACGATGAGTTGGTTAGAGTGTGCTGAAACAGAGGTTGACTGGCATGGCAACCTCGCGCATACATATAAGCAAATACAGTGAGCAAAGCAGGCAGTAGTC] [+] EMBL BM616747 [CCGCGCGTTTAAATAGCAATAGGTTTCATCAGAATCTGTGTTGTGTTCTCTTGTGCAAAGCATTAGGGGTGGGTAAGCCAAGGGTGTGTGCATGTGTGTTGGAAGGGGTTTTTAGAGGGACCGGTAGACCGATCGCGTGTGCGAATGATGAGGTTTTGAAACAGAGGTGAGCGCGTGTTCGTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCAGGCCACCGAAAACAACCGCTGCTGCAAAACGCTTTAGGATATTATAGCAACGAATAAGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAATGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGC GTATACGTGTGTGTGTGTGTGTGCTAACGTGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGAACTGAACACAAATTACATTATTTGAGAAGTGCGATTCGCCCGGTTATCTTTGACCCCCCCCCCCCCACACACACACACTCATACACAC ] [+] EMBL BX620942 [ gtGCGCGTGTTCGTAAANATTAAAACAAACATTGGCAAATAAAAAGCGAAAGGAGGCCACCCAGCATGGCCAGGCCACCGAAAACAACCGCTGCTACAAAACGC TTAGGATATTATAGCAACGAATAAGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAATGAAACAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGCGGTATta ] [+] EMBL BM625036 [ ccGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGC GTATACGTGTGTGTGTGTGTGTGCTAACGTGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGAACTGAACACAAATTACATTATTTGAG AGTGCGATTCGCCCGGTTATCTTTGACCCCCCCCCCCCCACACACACACACACATACACACACACACATATATAATGCTTTTTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTTTGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAACCTCCCGGAGATGGCATGGTAAGCAATAAACCGCAAGTGGACGGGCAGCGGTGGGTAGTGCGGCCGTAGTAGGACAGAGAAGGATACGAATTTTAAACAACAGGACACAAACGATGAGTTGGTTAGAGTGTGCTGAAACAGAGGTTGACTGGCATGGCAACCTCGCGCATACATATAAGCAAATACAGTGAGCAAAGCAGGCAGTAGTC] consensusID : consensus_5698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CCGCGTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCAGGCCACCGAAAACAACCGCTGCTACAAAACGCTTTAGGATATTATAGCAACGAATAAGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAATGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGCGTATACGTGTGTGTGTGTGTGCTAACGTGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGACCTGAACACAAATTACATTATTTGAGAGTGCGATTAGCCCGGTTATCTTTGACCCCCCCCCCCCCCCACACACACACACACACACACACACACATACACACACACACACATATATAGTGCTTTTTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTTTGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAACCTC] [+] EMBL BM595830 [CCGCGTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCAGGCCACCGAAAACAACCGCTGCTACAAAACGCTTTAGGATATTATAGCAACGAATAAGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAATGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGCGTATACGTGTGTGTGTGTGTGCTAACGTGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGACCTGAACACAAATTACATTATTTGAGAGTGCGATTAGCCCGGTTATCTTTGACCCCCCCCCCCCCCCACACACACACACACACACACACACACATACACACACACACACATATATAGTGCTTTTTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTTTGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAACCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5698#0 CCGCGCGTTTAAATAGCAATAGGTTTCATCAGAATCTGTGTTGTGTTCTCTTGTGCAAAG 60 consensus_5698#1 ------------------------------------------------------------ consensus_5698#0 CATTAGGGGTGGGTAAGCCAAGGGTGTGTGCATGTGTGTTGGAAGGGGTTTTTAGAGGGA 120 consensus_5698#1 ------------------------------------------------------------ consensus_5698#0 CCGGTAGACCGATCGCGTGTGCGAATGATGAGGTTTTGAAACAGAGGTGAGCGCGTGTTC 180 consensus_5698#1 --------------------------------------------------------CCGC 4 * consensus_5698#0 GTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCA 240 consensus_5698#1 GTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCA 64 ************************************************************ consensus_5698#0 GGCCACCGAAAACAACCGCTGCTGCAAAACGCTTTAGGATATTATAGCAACGAATAAGGA 300 consensus_5698#1 GGCCACCGAAAACAACCGCTGCTACAAAACGCTTTAGGATATTATAGCAACGAATAAGGA 124 *********************** ************************************ consensus_5698#0 CATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAA 360 consensus_5698#1 CATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAA 184 ************************************************************ consensus_5698#0 TGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTT 420 consensus_5698#1 TGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTT 244 ************************************************************ consensus_5698#0 GTCGCCTTTCAACAAAATTTAGCATAAGCGTATACGTGTGTGTGTGTGTGTGCTAACGTG 480 consensus_5698#1 GTCGCCTTTCAACAAAATTTAGCATAAGCGTATACGTGTGTGTGTGTGTG--CTAACGTG 302 ************************************************** ******** consensus_5698#0 TTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGAACTG 540 consensus_5698#1 TTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGACCTG 362 ******************************************************** *** consensus_5698#0 AACACAAATTACATTATTTGAGAAGTGCGATTCGCCCGGTTATCTTTGACCCCCCCCCCC 600 consensus_5698#1 AACACAAATTACATTATTTGAGA-GTGCGATTAGCCCGGTTATCTTTGACCCCCCCCCCC 421 *********************** ******** *************************** consensus_5698#0 CC----------------ACACACACACACTCATACACACACACACATATATAATGCTTT 644 consensus_5698#1 CCCCACACACACACACACACACACACACACATACACACACACACACATATATAGTGCTTT 481 ** ************ * ******************* ****** consensus_5698#0 TTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTT 704 consensus_5698#1 TTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTT 541 ************************************************************ consensus_5698#0 TGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAAC 764 consensus_5698#1 TGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAAC 601 ************************************************************ consensus_5698#0 CTCCCGGAGATGGCATGGTAAGCAATAAACCGCAAGTGGACGGGCAGCGGTGGGTAGTGC 824 consensus_5698#1 CTC--------------------------------------------------------- 604 *** consensus_5698#0 GGCCGTAGTAGGACAGAGAAGGATACGAATTTTAAACAACAGGACACAAACGATGAGTTG 884 consensus_5698#1 ------------------------------------------------------------ consensus_5698#0 GTTAGAGTGTGCTGAAACAGAGGTTGACTGGCATGGCAACCTCGCGCATACATATAAGCA 944 consensus_5698#1 ------------------------------------------------------------ consensus_5698#0 AATACAGTGAGCAAAGCAGGCAGTAGTC 972 consensus_5698#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||