These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 976 fasta sequence [CCGCGAAGTGGACGAAGGGAAAAAGTTGTTTTTCCACATGTCCGATGTTCAAGGCAACGTAAATCTCTATCTCGGAGATACGGTGGAGTTTTCCATCGTTACTAATCAGCGGAATGGTAAAACCTCTGCATGCAACGTTGTTAAAATAAACGATGCGAATGGACCGCGGCCCGAACGACTGATTTCCCGCATCAAGCTAAACTCCGTAGACGATAGTGGACCACGTCTAACTGTCATTCGTGCACCGAAAGGGCCGGACGGTACGAAAGGCTTCCATGCATCTGCCAGAACTCCTCGTTTAGTTGGTATATATCCAGCAAATGAATAATAAGTAACAAAAACGAAATTAGCAGATTGTAATAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCTTTGAAAAACAAAAAAAAAAAAAAAAACAAAAAAGTTGTGTATGCCTATCCATTTTAGTTAATCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCTGGAGGCATACGAAATAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGAAACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTGTTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCATTTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAAGACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCCGAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTATTTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATATTCGCAATCGATGTTC] [+] EMBL BM643603 [CCGCGAAGTGGACGAAGGGAAAAAGTTGTTTTTCCACATGTCCGATGTTCAAGGCAACGTAAATCTCTATCTCGGAGATACGGTGGAGTTTTCCATCGTTACTAATCAGCGGAATGGTAAAACCTCTGCATGCAACGTTGTTAAAATAAACGATGCGAATGGACCGCGGCCCGAACGACTGATTTCCCGCATCAAGCTAAACTCCGTAGACGATAGTGGACCACGTCTAACTGTCATTCGTGCACCGAAAGGGCCGGACGGTACGAAAGGCTTCCATGCATCTGCCAGAACTCCTCGTTTAGTTGGTATATATCCAGCAAATGAATAATAAGTAACAAAAACGAAATTAGCAGATTGTAATAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCTTTG ] [+] EMBL BM596718 [ ccgATGAATAATAAGTAACGAAAACGAAATTAGCAGATTGTAATAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCTTTGAAAAACAAAAAAAAAAAAAAAAACAAAAAAGTTGTGTATGCCTATCCATTTTAGTTAATCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCTGGAGGCATACGAAATAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGAAACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTGTTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCATTTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAAGACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCCGAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTATTTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATATTCGCAATCGATGTTC] consensusID : consensus_5709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 900 fasta sequence [CCGCCCACGCGTCCGTAATAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCATTGAAAAACAAAAAAAAACAAAATAGTTGTGTATGCCTATCCATTTTAGTTAATCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCAGGAGGCATACGAAACAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGAAACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTGTTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCATTTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAAGACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCCGAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTATTTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATATTCGCAATCGATGTTCGCAATTCTTGCGCTAGTCGAAACATTTCATTATATTGAATGCATACCGAGGTGTAAAATTGTGTGGACGTTGCGTAAATCGAATAGTTTTGTTTTATTTTCAAACGATACAATTAACTAATTCAAACTAAAGAATTCTAGTGTCATGTTTTTTTTTTTTATTTGGGCCTTGAATAGTTTTTTTTGTTTTTTTTTTTGTTGGGATTGTATACAAAATTATTAAAATAGTAAATATAATTCTAACCGATCACAAACGGTGTGGTGCACAATTATGA] [+] EMBL BM597656 [CCGCCCACGCGTCCGTAATAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCATTGAAAAACAAAAAAAAACAAAATAGTTGTGTATGCCTATCCATTTTAGTTAATCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCAGGAGGCATACGAAACAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGAAACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTGTTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCATTTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAAGACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCCGAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTATTTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATATTCGCAATCGATGTTCGCAATTCTTGCGCTAGTCGAAACATTTCATTATATTGAATGCATACCGAGGTGTAAAA ] [+] EMBL BM597491 [ ccgGAATTAAAAAAAACTATCTTCATTTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAAGACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCCGAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTATTTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATATTCGCAATCGATGTTCGCAATTCTTGCGCTAGTCGAAACATTTCATTATATTGAATGCATACCGAGGTGTAAAATTGTGTGGACGTTGCGTAAATCGAATAGTTTTGTTTTATTTTCAAACGATACAATTAACTAATTCAAACTAAAGAATTCTAGTGTCATGTTTTTTTTTTTTATTTGGGCCTTGAATAGTTTTTTTTGTTTTTTTTTTTGTTGGGATTGTATACAAAATTATTAAAATAGTAAATATAATTCTAACCGATCACAAACGGTGTGGTGCACAATTATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5709#0 CCGCGAAGTGGACGAAGGGAAAAAGTTGTTTTTCCACATGTCCGATGTTCAAGGCAACGT 60 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 AAATCTCTATCTCGGAGATACGGTGGAGTTTTCCATCGTTACTAATCAGCGGAATGGTAA 120 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 AACCTCTGCATGCAACGTTGTTAAAATAAACGATGCGAATGGACCGCGGCCCGAACGACT 180 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 GATTTCCCGCATCAAGCTAAACTCCGTAGACGATAGTGGACCACGTCTAACTGTCATTCG 240 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 TGCACCGAAAGGGCCGGACGGTACGAAAGGCTTCCATGCATCTGCCAGAACTCCTCGTTT 300 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 AGTTGGTATATATCCAGCAAATGAATAATAAGTAACAAAAACGAAATTAGCAGATTGTAA 360 consensus_5709#1 ------------------------------------------CCGCCCACGCGTCCGTAA 18 * * **** consensus_5709#0 TAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCTT 420 consensus_5709#1 TAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCAT 78 ********************************************************** * consensus_5709#0 TGAAAAACAAAAAAAAAAAAAAAAACAAAAAAGTTGTGTATGCCTATCCATTTTAGTTAA 480 consensus_5709#1 TGAAAAACAAAAAA--------AAACAAAATAGTTGTGTATGCCTATCCATTTTAGTTAA 130 ************** ******** ***************************** consensus_5709#0 TCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCTGGAGGCATACGAA 540 consensus_5709#1 TCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCAGGAGGCATACGAA 190 ********************************************** ************* consensus_5709#0 ATAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGA 600 consensus_5709#1 ACAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGA 250 * ********************************************************** consensus_5709#0 AACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTG 660 consensus_5709#1 AACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTG 310 ************************************************************ consensus_5709#0 TTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCAT 720 consensus_5709#1 TTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCAT 370 ************************************************************ consensus_5709#0 TTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAA 780 consensus_5709#1 TTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAA 430 ************************************************************ consensus_5709#0 GACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCC 840 consensus_5709#1 GACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCC 490 ************************************************************ consensus_5709#0 GAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTAT 900 consensus_5709#1 GAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTAT 550 ************************************************************ consensus_5709#0 TTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATA 960 consensus_5709#1 TTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATA 610 ************************************************************ consensus_5709#0 TTCGCAATCGATGTTC-------------------------------------------- 976 consensus_5709#1 TTCGCAATCGATGTTCGCAATTCTTGCGCTAGTCGAAACATTTCATTATATTGAATGCAT 670 **************** consensus_5709#0 ------------------------------------------------------------ consensus_5709#1 ACCGAGGTGTAAAATTGTGTGGACGTTGCGTAAATCGAATAGTTTTGTTTTATTTTCAAA 730 consensus_5709#0 ------------------------------------------------------------ consensus_5709#1 CGATACAATTAACTAATTCAAACTAAAGAATTCTAGTGTCATGTTTTTTTTTTTTATTTG 790 consensus_5709#0 ------------------------------------------------------------ consensus_5709#1 GGCCTTGAATAGTTTTTTTTGTTTTTTTTTTTGTTGGGATTGTATACAAAATTATTAAAA 850 consensus_5709#0 -------------------------------------------------- consensus_5709#1 TAGTAAATATAATTCTAACCGATCACAAACGGTGTGGTGCACAATTATGA 900 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||